Array 1 2378-2108 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWW01000392.1 Klebsiella pneumoniae strain 1002865 NODE_392_length_2378_cov_7.103115_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2377 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 2316 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 2255 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 2194 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 2136 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7495-8254 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWW01000213.1 Klebsiella pneumoniae strain 1002865 NODE_213_length_8704_cov_11.798024_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7495 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7556 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7617 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 7678 29 93.1 32 T...........................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 7739 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 7800 29 96.6 32 .........................A... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 7861 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7922 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 7983 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 8044 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 8105 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 8166 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 8227 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-1632 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWW01000427.1 Klebsiella pneumoniae strain 1002865 NODE_427_length_1637_cov_5.109233_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 78 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 139 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 200 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 262 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 323 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 384 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 445 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 506 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 567 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 628 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 689 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 750 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 811 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 872 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 933 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 994 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1055 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1116 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1177 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1238 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1299 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1360 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1421 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1482 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1543 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1604 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTAATATATCTTTAGTG # Right flank : TGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-831 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDWW01000487.1 Klebsiella pneumoniae strain 1002865 NODE_487_length_839_cov_6.859459_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 71 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 132 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 193 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 254 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 315 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 376 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 437 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 498 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 559 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 620 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 681 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 742 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 803 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAATTCTTCG # Right flank : GTGATCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //