Array 1 42081-42658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000022.1 Gilliamella apicola strain N-22 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42081 29 100.0 32 ............................. ATCCCAAATATGTTAATTTGAAACAATTAGCT 42142 29 100.0 32 ............................. AAAACCCTAACCCGTTAATGTTGCGGGTTGGT 42203 29 100.0 32 ............................. ACTAACCGCGTTACTACCTCCACGCAGATTAA 42264 29 100.0 32 ............................. CCGCAGACACTAAAAACTTCTTAACCGAATCA 42325 29 100.0 32 ............................. GGGTGGCACCAAATCGCCAAAGAGTGGAACGG 42386 29 96.6 32 ............C................ AACTCAAGGATAGCGCGCCTCAATTTGCAGGG 42447 29 96.6 32 ............C................ AATTCATCAAGAAACAGGAGCTAGAAAATGGC 42508 29 96.6 32 ............C................ GTAATTCATTCTGATTTAAGCATGATAGCGGG 42569 29 100.0 32 ............................. CTCGGTGGTGTAGCCCAAATGCTGGCACGAAC 42630 29 89.7 0 ............C...T..........T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTCTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTTCACCCATCGATAAAATAACTTAGTGCAATGCCAACATAGTAACTTTTTGCTATTTAATAAATCCTAATTATATATTTCAAGGTATTATTATTTTTAATCTAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAAATCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACGGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGATAGCGGTTTCTGAACAAAGTTTATTGTGTATAATGTTCTCGTTTACTACCGCATAGCTAGTTTAGAAAGGGTGAAAATGGAAAGGTTCATTTTAGGAACTTTAGGAGAAGATCTATTTGTTGTGCAACATGACAATTTAAGAAAAGTTCATGAATTGATTCAAAATAAGCCTTGGGCTGATGATATTTTGGAACAGATTCAAACATTGATAGATAAAGAATCAAGTGTACCAATTAGACGTATGATGTCAATGAGCATGAGTTCAGTAATAAATAAACTCGAAAATAATAAGTAGAGCTTAGTTGAGTAACAATATGCTACCCAACCAGTTAATTATTATTAAGAACTATTGAACATCAGTATCGCTTCTTCAATAATGTTCCTTGGACATACAGGGATATTCACTGCCGTGTAAAATATTAAAAATCCAGCAAATCAGGATTAATACCTAGCGCGTTAGCGATTTTAATTCGTGTTGTTTTTTTTAACGTTTGGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20802-21072 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000028.1 Gilliamella apicola strain N-22 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 20802 26 100.0 36 .......................... CCGCTACAGGATTGGAAAGAACAGCAGATCGCAGCC 20864 26 100.0 35 .......................... CCGCCACCGTATTATTAATGGCTTTATTAATGATT 20925 26 100.0 35 .......................... CCGTGTTGCACCTGACCAACCAGCCAGCCCAGCAA 20986 26 100.0 35 .......................... CCGTATTTGCATTTTTCGGATTCTGTTTTGAACAC 21047 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 5 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTTAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTATATTTTTTGGGTGTCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ACCATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTGTAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAGTTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTGTAAAAGTAGATTTAATTTTTGTCTAATATCTTTATACTTATCGATAATTTGTTATAGGGAATAATATGTTTTTAATAGGTTTTTGAGATTATTTGCGTTAAAAGCATAGATTATGATAGATTTTTCTTATTTATTATGGATAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 118897-118197 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000004.1 Gilliamella apicola strain N-22 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118896 29 100.0 32 ............................. GCGCCGAAAGAGGCGCCCGATAATCTCAAATC 118835 29 100.0 32 ............................. CACAGGTATATAATGGTATTGTTATTTCCTAT 118774 29 100.0 32 ............................. CGCTTGAAAAATCGGATTATAACTAGACCAAT 118713 29 100.0 32 ............................. ACGACTGGTGGCATAACGGGCAAAACCTATAT 118652 29 100.0 32 ............................. CATTCGCAATACCACCAAGTGTCTTTTAAACT 118591 29 96.6 32 ..............T.............. CGGAGGAGGAGGCGAAAATTGAGGCTCAACGC 118530 29 100.0 32 ............................. CATTATTATCTAATTCAATTTCTTTAGTGTTC 118469 29 100.0 32 ............................. GGTGTTCACTGACAACTACTGATTCATCAGGT 118408 29 100.0 32 ............................. CTATTCTCTGGTTCAATAGTTATATCAAGCCC 118347 29 100.0 32 ............................. ACTGGGTAAAATCAGCTAGAAATAAAGCTAAT 118286 29 100.0 32 ............................. CATAATGTCGTCCACTCCTAACGTTGTTACTG 118225 29 82.8 0 .......................TTTT.T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGTACCGATTCGTTAATATCAGCTTAATAACATTAATTATGCTTTCAATAAAAATATTGGTTAAATCAAAATGATTTGATTGAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATGTATTAATATTGCATATTATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACCTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTTAACTTCTATCAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGCAAAATTTTACTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATATAAACCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTTAAAGTAACGCTCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTACAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGCGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATTGATGAATCTATCCAAGTAAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCTAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14481-15048 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000043.1 Gilliamella apicola strain N-22 NODE_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14481 29 100.0 32 ............................. CTCCGATGAAATTCTCGCCATGATGGATGAGG 14542 29 100.0 32 ............................. TATTTTTAGCAACAAAACCCATTCCCACTCCT 14603 29 100.0 32 ............................. GGGGTCGTTTTGCTGTATCTATTATATTATGC 14664 29 100.0 32 ............................. TTACCTCGAAATTTGGCAGCTTTAATCCACCA 14725 29 100.0 32 ............................. GTCGAATCCGCCGAGCGAGATAGTGCCGCCGC 14786 29 100.0 32 ............................. GAGCATTTCATGACTAAATTTATAGAGCTAAC 14847 29 100.0 32 ............................. AGGTGGTTTATTTAAATATAACTCTCAGTATT 14908 29 100.0 32 ............................. CTAAAAACAGATAACTTAAATAAGGTATGGGA 14969 29 96.6 22 ............................A ATAGAGCTCAACATTATTATAA Deletion [15020] 15020 29 79.3 0 .A....A.......TG.......T....A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAACAGCCTTACATAATGGCTTTTACAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAACTCCGTGGAATCTAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTAAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATAAATTCACACAAACCGCCTAAATGGAGGTTTTTCATTGCCAAAATCCTTTAAATAACATACCATTTAAAAAAAATATAAAGATTAAGGATATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGCTTTGCGTTGTCTGGTTGTGGTGATGATAAGGTGACAAAAGAGTATCTTGTTGGCAAATGGGAGTGTAAATGGGACAGTTATAGGTCGACAATGAAAGATGGAAAATTTACTGATTATGTTAGCGATGAGTTTAATATAATAAGGAATGAAGAATTCAAAATAGAAAATAATAAGCTGTATAGTATAAGTAAAACTGAAATAGATGATGATTCAAATGGTTGGAAAGAAAGTGATATAATTGATACGCATACAGGTGAAATAATAGAGAAAACAGAAAATAATTCAACAGAAAAGACAATCCGATCTCTAATAAAAAAATCACATGATACTTATATAATGAGTAGCGAATATATTAAAACTCGAAACGAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20047-19224 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000034.1 Gilliamella apicola strain N-22 NODE_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20046 29 100.0 32 ............................. CAATGCAAATTGGTATCGATGCTGACGGTGGT 19985 29 100.0 32 ............................. TATTTTTAATAAATAATAAAAAAAGGGGTAGG 19924 29 100.0 32 ............................. AGTTCGCTGATATTGATGTGGTTGAATCTCTT 19863 29 100.0 32 ............................. TATCGAGAGGTTAGCATGTCCTTTTATACTAA 19802 29 96.6 32 ............................T GGATAGGAATTGTCACAATTGCGTTAATGTCG 19741 29 100.0 32 ............................. AGTAGTGTGCTTTAAGTTTTCTAGTCTTGGCA 19680 29 100.0 32 ............................. AGTGCATTAGCGAACTAGCCGAAAAATTGGGT 19619 29 100.0 32 ............................. TTTGTGCTAATGTAGAATTTTTCTCCAGCTAG 19558 29 93.1 32 .T..........T................ AGAAAAAAGAGCGTACCGATTGGCATAGGATT 19497 29 93.1 32 .T..........T................ GTATTAATTACCGCTATACCCATGTTTTTAAC 19436 29 93.1 32 .T..........T................ CCTTTTTTAACATCACTCCGTTTCATTTTAAC 19375 29 93.1 32 .T..........T................ CAATCAAAACGCGAATTAGAAAATCAATCAAC 19314 29 96.6 33 .T........................... GACGGCGCAATCGAACCGTACCGATCACGAGGG 19252 29 79.3 0 .T.....................T.TTGA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.1 32 ACGTTCCCTGTACACACAGGGATAAACCG # Left flank : GATAAACCCAAATCTAATAGTTTCAATACCAAATGTTTTGTGGCGTCTACAGGAAGCTCTTTCAATTTGCCAAGATATGTCGCGGACAGGGATAAACAGTAACAATTGAGCGATACCGAGGTCTCGGTATCGGTTGTTGAATCCATAAAAGGTGGTAGAAATTTCTAGTCAGGTATTTTAACTAATAAACAATAGGTTATAATAAGAGTATTCCCTGTATACATAGGAATAAACTGGCCACGCGTCAATATTACATATCATTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATTGGTAAAATCCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTATTTCAATAAAAACATAATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTTAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTAAGAAAATCATAAAAAGTCAATCTTGCTATCTACTGTCTACGTAGAGGAGTTTTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCGCTTATTAAGTAGTTGTAAATTTCATCTACAATTTCGATTCCATTTTTTAAGTAATTTGCTTCACGTTTTTTACCGCGTTCACCAGGAAAAAATACCTCAGTAATTCCTTTAGCAGGTTTAACCTTTTTTAGTTGATCCAGCATGGCGGACATGTTCTTTTTGAAAGTTTCAAGACCGATAAAATAATCGGGGTTGATAACAATATGCAAATGCCCAAGATCTCGTCCTTTGGATAAATCGGCATACATTGATGAGACGTTTTTACCAAATGGTACACCTAATAAAATGCCTGACAATATATCCACCATCATCATTAATCCAAAACCTTTTGCATCTGCTATAGGTAATAGAGCATTGACCTGGTGCGGATCAGTTGTTGGTTTCCCTTGTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : GTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22951-22434 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000034.1 Gilliamella apicola strain N-22 NODE_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22950 29 100.0 32 ............................. CGCTGAACGCGGCATCCAAAACTATAAAATGT 22889 29 100.0 32 ............................. ACGCGGGTATGTGAATATATCGGTATCGATGG 22828 29 100.0 32 ............................. TCGTTTGGATGAATTAGAAAGTAAATTAAGAA 22767 29 100.0 32 ............................. TTAGCCGGCTTCAAACTCATTGACCCATTTAT 22706 29 100.0 32 ............................. GCGGTAATGCTACTGGCTATTTAGTTAACGGA 22645 29 100.0 32 ............................. CAATCGATTATTGCCTGCGTTCGCTAGGTGAA 22584 29 100.0 32 ............................. TTTTACATTATAACGGTGTTATCTTGCGAGGG 22523 29 100.0 32 ............................. GGTTTCGCGCACATCATCCCTGAGGTCATCAA 22462 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TTCAGTATAAAAATCATCAATAATTTAAATTAACTTTATGTTTATAAAGAAAACATAATATTTAATCAATACAAGCATTTATTTTAATATTGAGTAATAGATTCGAAATAACCGAGTTTACATAATGGTTTTTACTTAAAAAATATATTGGTGTATTCAAAGATCGTTGAAATGATATTAACTATAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CGTTAAGCCTTAATGTTGCGGAATATGCTAATCATAAAACATTAAAAAATATTATAAATCAAATGGAATATTTACATTGGCATCCCGTACCAACACCTAGATGTGTTTATGCTCATGAGATGGGACACGCATTACATCATCAACACCAGGAAGAAATTGATAATATCATTAAGAAATTGTGGGGACGAGGTTGGGCACATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTCGCTGAGGCGTTTTCATTGTATATTGAAAATCGCATAGAAGCTAAAAAAAGACTACATGCAGAACTATTTAAATTTTTCGAATCGTTAGATAAGGGTATTAAATGAATAAATTTGATTTATTAGTTGAACAAGCAACTAAATTGATTAACACCGAACCGCTTCCTGACGATGCAGAGGAGCAATTACAACGAATTATTGACCAAGCAGAAAGTAAGCCTGAAAGGTTTATGTTAGCCACTTTTGCTGAGGCTTTGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 30671-30520 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASB01000034.1 Gilliamella apicola strain N-22 NODE_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30670 29 93.1 32 G.T.......................... ATTTTCCAATTGTTAGACCGAGCGGAAAAGTC 30609 29 100.0 32 ............................. TACTGGCTTTTACACATAAAATACTGGCTTTT 30548 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TAAGTGCGAAAGAATTATAAAAGTTAGTGAAATTATCAATTTTATTCTTGATAGGCATTTAAATAACGAGACGTTAGAACAGATAATACAAGAGTTTATAAAAAAGAAGAGGTAAAGTAACGATGAAAAAGATAATATTTTGTTTTGTTTTATTTTTTATGTTAGCCGCATGCGGTGAAAAAACTAATTTTCAAGGAAAATATGACGAAATAGAAACTAAAGGTGAATTGTGGCTAATATTAGAAAAAGTAAACGATGTTGATTATAAACTTACTACTGAATGTTTCAATCAGAAATGTATACATGCCGTAAAAATAAAAAATAGTAATCAACTTTTTGATTCAAAAGAAACTTATATAGGTGAATTTAAAGAAAATAAAGACTTTGTAGACAACAGAGGAAGAGTTTATAAAAAAGTTGAATAATTTTATAACGTCAAAAAATTAAATTGTTTATTCAAAGTTCAAATTAATAGGATTTAGTATATATGTCAGCTTTGT # Right flank : AGATAGGAGTTTTTTATGCTGTATTTTGTTAGATTTTTTACGTTAGTATTTATTTATTCTTCTTGTTTTGTAATTCTAGCTCAAAATATTGTAAATGCTGGATTAATCATAATTTTTGATGTGACCATTTATTATTTTGTTTTTTTTAAATATACAAAAGCAGTTGTTAAAAGTTTTAATAAAATAGGGGTAGAAACTTTTAAAAGTAACTATAAAAAAAGCAATTTATATATATCAAGAAATTATGCTAGTGCAATATATTTTGATGACGTTGAAAGAAAAATCCACTTTTTAAATCCAAGAAGATGTGTTTCTAAATTTTGTTATTCAGATTTAGTAGAGGCTGATTTTGAAAAAAATACATTAATTCTATATTTTACTGGAGAAAAAAGGCTGAGTGCACCATTCTATTATCAAAAAGAGGATTTTGGTCATTTAAATTCAATGATAGGGGTTATATTTGGAGGCTGAATTTAATAAAAATACATTATTTCTATATT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //