Array 1 1877924-1876181 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLU01000003.1 Flavobacterium columnare strain MS-FC-4 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1877923 36 100.0 30 .................................... TTTAGGTTCAAAAGAACCATTAGCTCAAAG 1877857 36 100.0 30 .................................... TCATCATCGGAAGGTCTGTAATTAAATTCA 1877791 36 100.0 30 .................................... TCGACTTCAAGCCAAAGATTATAATAATTA 1877725 36 100.0 29 .................................... TTATCGCTTGTTACTTCGTACTCGCCTGC 1877660 36 100.0 30 .................................... TAAGGTTTGTAAATCGGAAAAGCAGTCTAT 1877594 36 100.0 30 .................................... TCGTATGTTTGATTAGTGGTGAATGTTTTC 1877528 36 100.0 30 .................................... ACGCAAACGAATTTCGTTAGGTTCAAAAGT 1877462 36 100.0 29 .................................... TATTCCAACTGTTTTTTAGACACTTTAAG 1877397 36 100.0 30 .................................... TTATCTGTAATTAAAAAATAAACCCCGAAA 1877331 36 100.0 30 .................................... TAGGGTTTAATTAAAAGGCGAAAAACTCAA 1877265 36 100.0 30 .................................... CCTGTTAAAATACTACTATATAGCGAGAGG 1877199 36 100.0 29 .................................... AAGTTTCTATTCGTGTATTTTCGAAACTG 1877134 36 100.0 30 .................................... TCAGTTGCAACAGAGAGATAATTGGTGCCG 1877068 36 100.0 29 .................................... CAATAACTGAATGACCAAAGCCGTTTGGA 1877003 36 100.0 30 .................................... TGATTGTTATCCAATTGAAAATCTTTCATG 1876937 36 100.0 30 .................................... TGATTGTTATCCAATTGAAAATCTTTCATG 1876871 36 100.0 30 .................................... TGAGATTATTTCTAAATTATATTTTTCCGC 1876805 36 100.0 29 .................................... GATTTGTTTGACCAAGTTGGATTTGATAA 1876740 36 100.0 29 .................................... AAATTCATCTGTTTCTTCATCGTAAGATT 1876675 36 100.0 29 .................................... TCTCAATAGCTGTGGTTTCCACGTTTTCT 1876610 36 100.0 29 .................................... TTTTGTTTGTTTACTCTCTCCTTGTTTGA 1876545 36 100.0 30 .................................... AATGAGTGGTTGTTTTTCAGTTGTGAAATA 1876479 36 97.2 30 .....A.............................. TCTTTTTATGTGGTATTTTAAATTACCATA 1876413 36 100.0 29 .................................... TTCCTTTGGAATCAAATACGCCTATATAT 1876348 36 97.2 30 ........................C........... AACTAACGGCCAGTTTGCCGTTTCAGTCAA 1876282 36 100.0 30 .................................... TATTTCAGTCCCTATAGGAAATACACCATA 1876216 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 98.7 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : GAGTACGCAAATACATCCAGCCGATTTTGAAAGAGAGGGCAATCCAAATTTTAAAAAATATTTAGCCCATTCTATTTTAGAAAACGAAGATGATCTTGATAAACTGCCTGAAAAAGCAGAAGCAATGAGGGAACTGGATGAAACAATTACTAATCCAATCATTAAAAAAGCGATTGTGTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCGAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2445448-2442464 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLU01000003.1 Flavobacterium columnare strain MS-FC-4 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2445447 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2445433,2445444] 2445375 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2445266 36 94.4 30 T.....A............................. ATGGTGCTGAGTAATTCATTACTCATAAAC AATAT [2445254] 2445195 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2445130 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2445064 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2444999 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2444934 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2444868 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2444802 36 100.0 30 .................................... TTTAGAACTTGTAAAGGAACATTTAACCCG 2444736 36 100.0 30 .................................... CGACATCGATAAGATCGTATCGCTTTATTG 2444670 36 100.0 30 .................................... AATACCTGAAGAATATTACACTGTAACAGA 2444604 36 100.0 30 .................................... AATTGCTGATAAATTATGCATCAGCGAGAG 2444538 36 100.0 30 .................................... GACAGAGTAGGGGTTATTTGTCGGTTTGTA 2444472 36 100.0 30 .................................... GTTGCCGCAATATTTTTAGAAAGCTCTGCA 2444406 36 100.0 30 .................................... TTTAACGATACAAGAAGAATGTTAGAAACA 2444340 36 100.0 30 .................................... AAACCTAATTCAATTATGGTAGATGCTATA 2444274 36 100.0 29 .................................... ATTTCCTAATTGAAAAACAACCATTCATT 2444209 36 100.0 30 .................................... ATTGAAGATTTTAAATTTAGTGGGTTAGAA 2444143 36 100.0 30 .................................... AGAGGAACTTTCAATATAGTTTCTACACAT 2444077 36 100.0 30 .................................... TGCGTGAAATTGTTTGTATATTTGCCTTGT 2444011 36 100.0 30 .................................... TAATCTGGAGTACGAAAACATAAAAGAGAG 2443945 36 100.0 29 .................................... TTATTAATTTAAAAAAGAAATCAAATGAA 2443880 36 100.0 30 .................................... TTCTGCCTTTAGCATAATCAAGAGTTCTAT 2443814 36 100.0 29 .................................... CCTGTTTCCCAAGGTTGAACAATTACGCA 2443749 36 100.0 30 .................................... ATTACTGCTTAACTTATTATCTGTGTATTA 2443683 36 100.0 29 .................................... TTTTTAAAGGTAGTTTATACCCTTCGGAC 2443618 36 100.0 30 .................................... AATATTTGTATAGAATGTAATAACGACTAA 2443552 36 100.0 29 .................................... ACTAATGTAAATATCGTTAACGTACTGGA 2443487 36 100.0 30 .................................... TTTGTTCCGTTGGGCATTCAACAGGCGCTA 2443421 36 100.0 29 .................................... ACAAATATGCCTCACATTGACCCATATAA 2443356 36 100.0 30 .................................... ATATATATTTGTCAAGTACAAAATGAGATA 2443290 36 100.0 30 .................................... TTTATTCTTAAAATAATGATAAGAAGCTAA 2443224 36 100.0 30 .................................... TTAGAATATCTTGATTCTAAGAGTAAAATA 2443158 36 100.0 29 .................................... ATAATTTCGGACGGTTTCGATATATTACA 2443093 36 100.0 30 .................................... TTGAACGAAAAAGAAAAAGTTAAGGTTTTG 2443027 36 100.0 30 .................................... CTTGCTAATTTACCCGATTTAAGAGCTTTA 2442961 36 100.0 30 .................................... GAGTTTGAACGTTTAAAAGAGTTCGGAGTA 2442895 36 100.0 30 .................................... TTGGAGAGAATTAGTAGAACGTCCGCCTAC 2442829 36 100.0 30 .................................... AAGACAACAAGCCAACGACATACGTAAAGG 2442763 36 100.0 30 .................................... TCAATTATTATTTATATATTTGTCCCGTTA 2442697 36 100.0 30 .................................... TTTCGTAAAGTGTCGGCTACCATTAAGAAG 2442631 36 100.0 30 .................................... AAGAACAGGAAATCGATGATAACGAAGTAC 2442565 36 100.0 30 .................................... ATATGTTAAAATTATGTTAAAGTTTTTTTA 2442499 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 45 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //