Array 1 26212-25581 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGIC01000004.1 Helicobacter mustelae strain NCTC12031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26211 36 100.0 30 .................................... TGTTAAAGAAGCGAGCGATTTTATCTCTTT 26145 36 100.0 30 .................................... AAGTTTTCCCTGCAAAGTAGAGGAAGTCGT 26079 36 100.0 30 .................................... GCAATTAACACCGATGATATTATCCACCAA 26013 36 100.0 30 .................................... CATAATTATTGATAAGAGGGAATAGCTGGC 25947 36 100.0 31 .................................... TTGATATACTCCTAAAAGCTAGCCTAGCTAG 25880 36 100.0 30 .................................... TACTCCAAATATGGGAACAAAAAAACCATA 25814 36 100.0 30 .................................... TACTCCAAATATGGGAACAAAAAAACCATA 25748 36 100.0 30 .................................... TTCTTTAAATATTTTCCAGAGAGCGATAGG 25682 36 100.0 30 .................................... AAAAGTGTTGATTTCTTTCAACTCTGAAAA 25616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 ATTTTAGCATAAACATATTTATGAAGTGGCTAAAAC # Left flank : AGCAATTTTTCTCCCAGCAAAAAGCGCAAACTCACACAAAAGAATTTCAAAGAGAGAAATGAGGAGGATTTCCTAGCAAGAAATCTTGTAGACACTGGCTATATCGGAAGAGTGACAAAAGAATATATCAAGCATTCTCTATCCTTCCTCCCTCTCCCTGATGGCAAAAAGGAGCATATCCGCATTATTTCAGGCTCTAGTCAGGATTTGCAAAGGAGTCAAAAGCGCAAATACCTATCTTGAACGACTTCATCTCTATTTGCCCAAAAAAGGACATATCAGAGCCTTGATTTTGACAGAAAAACAATTCGATCACATGAAAATCTTGATAGGAGAAATTTCGCAAGCGCAAAAGGTCCAAAAACCTACTCCGCTCACTCTGTTTTAGGCTCGGTTTGAGGGGATGCTAGGCAGTTACCCCACAGAGGACCGAAAACTCTTTATTTTAGCCACATCCCACCTCCTGAAACTCCCTTCTTTAGGGGATCCTCAAGAGGTGT # Right flank : GCTTGGCATGAAATACAAATCCTAGATCAAGCCAAAAACCAATTCCAAATGCTCCCCAGTCATTTCTGCGAGAAAAACAATCAAAACTCCAAAAACCTCCCTCAGCTTTTCCATTCCACAAAATTAACATACACAAGACTGGCCATCAAAGACTGGCCATCAATGAAAAAGTAAAAACAAGCAAGAAGCATCTATTTTCTTTCTAAAGAGTTTAGACTCACTAATCAGCAGTTTTTATTTTTGATTAAAAGAAAATTTTATCATTTAAATTAAGTGGGAGACAGTAAAAAGCAACACATATATCCACATTTTATTGGCTTAAGAGAGTATTTGTCAATAAATATACTTTATAATGGCAAGATTTATTTTCTTAGAAAGAGAGTATTTAAAATGTTTCAAAAATTTCTTATCAAGCAAGTTCTTAAAAAGTGGAATTTTGGGCGTTATGTGATCGAGTTTTGGGATGGAGAACAAGTCAAAATAGGCGAGGGGGAGCCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAAACATATTTATGAAGTGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 19094-17937 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGIC01000003.1 Helicobacter mustelae strain NCTC12031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19093 36 100.0 30 .................................... CTTACCAGTCGATACACGGCTGCATCCTCA 19027 36 100.0 30 .................................... CTGAATTGCACTCTATTTTGGATAGTGCTT 18961 36 100.0 30 .................................... CACATCAACCTGCGAGCGAAGAAGTGAAGG 18895 36 100.0 30 .................................... ATATTCGTACACCACGAATCAATACTTCTA 18829 36 100.0 29 .................................... CGTTAAACTAGTGAGGTTTCCAAGGTTCA 18764 36 100.0 30 .................................... GGGCTGTGTCTTTGAGTGAGAACTTTGACC 18698 36 100.0 30 .................................... CTATTTTTATAAATCAAGATTTAGGGGTAG 18632 36 100.0 30 .................................... CTATTGCTTCAAAGATAGAGAGGCACACCT 18566 36 100.0 30 .................................... CTTTGATTCATAAGATAACTCCGCTTTTAA 18500 36 100.0 30 .................................... AAAAAGATTCTGACTTCTTAGTTACTAGAA 18434 36 100.0 30 .................................... TATTCGTAATAATTTTATTTCTAGAATAAG 18368 36 100.0 30 .................................... TTCGACGGTTGAAACATCGATTTTATTTTT 18302 36 100.0 30 .................................... GATTAGGAGCGGAGTGGCTAGACTCTTTTA 18236 36 100.0 30 .................................... ATATGTATATAATAGGGTATCAACACATAT 18170 36 100.0 30 .................................... TAGAGTGTAGGTCTCCTCACTATAGTCAAA 18104 36 100.0 30 .................................... TCACCTAAATTATGAAAGGAGAGCAGCGCT 18038 36 100.0 30 .................................... CCTTGGTTGTTAATTCATGCAAGCGATAAA 17972 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 ATTTTAGCATAAACATATTTATGAAGTGGCTAAAAC # Left flank : ATTTCAAACTTTATTTGCGATAGAGGCAAAATGATAGAATTGCCTATCTTGGACAAGGAAAGCAATGGAAGAGAAGTTTATGAGAGTTTTAGTGATGTTTGACATGCCCACAAAAAGCAAAGAAGATAGAAAGGCAAGTGCCAAGTTTCGCTCTACACTTTTGAAAGAGGGCTATTTCATGCTGCAATTTTCTGTATATGTCAGGATTTGCAAAGGAGTCAAAAGCGCAAATACCTATCTTGAACGACTTCATCTCTATTTGCCCAAAAAAGGACATATCAGAGCCTTGATTTTGACAGAAAAACAATTCGATCACATGAAAATCTTGATAGGAGAAATTTCGCAAGCACAAAAGGTCCAAAAACCTACTCCGCTCACTCTGTTTTAGGCTCGGTTTGAGGGGATGCTAGGCAGTTACCCCACAGAGGACCGAAAACTCTTTATTTTAGCCACATCCCACCTCCTGAAACTCCCTTCTTTAGGGGATCCTCAAGAGGTGT # Right flank : GCTTGGCATGAAATACAAATCCTAGATCAAGCCAAGCAATACCAAATGCTCCCCAGTCATTTCTGCGAGAAAAACAATCAAAACTCCAAAAACCTCCCTCAGCTTTTCCATTCCACAAAATTAACATACACAAGACTGGCCATCAAAGACTGGCCACCAATGAAAAAGTAAAAACAAGTAGGAAGCATCTATTTTCTTTCTAAAGAGTTTAGACTCACTAATCAGCAGTTTTTATTTTTGATTAAAAGAAAATTTTATCATTTAAATTAAGTGGGAGACAGTAAAAAGCAACACATATATCCACATTTTATTGGCTTAAGAGAGTATTTGTCAATAAATATACTTTATAATGGCAAGATTTATTTTCTTAGAAAGAGAGTTTTTCAAATGTTTCAAAAATTTCTTATCAAGCAAGTTCTTAAAAAGTGGAATTTTGGGCGTTATGTGATCGAGTTTTGGGATGGAGAACAAGTCAAAATAGGCGAGGGGGAGCCTGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAAACATATTTATGAAGTGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //