Array 1 581864-583479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRUE010000001.1 Klebsiella michiganensis strain KLO00038 KLO00038_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 581864 29 100.0 32 ............................. GAAGCGCTCAAAGAGATACTTATCACCGGCAA 581925 29 100.0 32 ............................. CGAAGGCTTAACACAAGCGAGTTTTTCAGAGA 581986 29 100.0 32 ............................. ATATGCCGATCCCGGTTGATACTGGCATGGAA 582047 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 582108 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 582169 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 582231 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 582292 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 582353 29 96.6 32 ............................A ATTGTCTTGCCGTAAGCCCAGAGACTTCTCCC 582414 29 100.0 32 ............................. GTTTTTTTGCCATAATTAACTCCGAAAATAGT 582475 29 100.0 32 ............................. CGGGGATAGAGGATTTCCGTTTTCACGACCTC 582536 29 100.0 32 ............................. GGTTTCGACTACTCCATGAATACCGTCTCCTC 582597 29 100.0 32 ............................. TTGACGGGAGGGTATGGTCTGCGATTGTCATT 582658 29 100.0 32 ............................. GCACAACGGAATACTTGTCACTGACTATAGCT 582719 29 100.0 32 ............................. AAAATCCAGCAACACTTACATCAACCTGAGGC 582780 29 100.0 32 ............................. TGTTCGATAACTTCTGATTTACGCATGGTTCC 582841 29 100.0 32 ............................. AGCAGCGCGCTAACTGGTTCCAGATGGCACAG 582902 29 100.0 32 ............................. GGCCAGGCGGTCGTAGGGGCGAATCAGTGAAT 582963 29 100.0 32 ............................. AACGTAAACGGGCTGGGCTTTACTGAGCGGAT 583024 29 100.0 32 ............................. AGATTGATGCAGACATAGCGAAGGCGGAAGAA 583085 29 100.0 32 ............................. AGATTGATGCAGACATAGCGAAGGCGGAAGAA 583146 29 100.0 32 ............................. ATTACGCAGGTCTTCACGCAGCGGCGCGGCAC 583207 29 100.0 32 ............................. TCGCGACAGATTGGGGCGACCTGGTATTTTGC 583268 29 100.0 32 ............................. TCTTCAGAGCGCACCCTTGCTGTTCAGGCTGC 583329 29 96.6 32 ............T................ CAATGGTAACAAGTGATCCGAGCGCAATCATC 583390 29 96.6 32 .............T............... GACTCACGAAACGCTTGGTTGATGTCTGAATG 583451 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATCGCCTGATGGCTACGGGAAAGGCGCAGGGGCTCTATTTTGGTCTGCCGACGATGGCGACGGCGAATGCCATGTTCGATCGTATGTCGGAGAGCTGGCTGGCGTTGTATCAACCCGGTTCACGGCCAAGCCTGGTGCTGGCGCATAGCGCACGTGGATTAATGGATCGCTTCAATCAGTCTTTGTGGTCGGGAGATTTATCGGGTTCAGAAGAACCCGATGAGCTCCAGCCATCCAGCCAGGGATGCGCCGCCTGGTTTGCCGACAGTAATAAAAAAGCGCTGTTGGCCGAGGTGGGCGTTGGCACGCTCGATCAGGCGATGATGGCGGTGATGCCGTTTAAACACAATAACCTGCGGATGTTAGGGCTGAATAATAAAATCTTGCTGGCGGATGAGATTCACGCCTATGACGCCTATATGTCGCGGATTCTGGAAAGTCTGATTGAAAAACAGGCCAGCGATGGCAATACCACGATTTTACTTTCCGCCACGCTCT # Right flank : GCCCGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCGCGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCAGCATTCTTTAGTGTGGCAAAGTCCGCTTCCAGGTAATACTTGCCAAATTTTGGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACCGATGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAACGCATCATGGCGACAGTCCTTGTTGCCTGATTTTATCGTTAGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATTACATCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAGCTGTACGTCATGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 135080-136788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRUE010000009.1 Klebsiella michiganensis strain KLO00038 KLO00038_c0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135080 28 100.0 32 ............................ TATAACTCGGCCACAGGTCGGCTTATCCTGAA 135140 28 100.0 32 ............................ ATCAGGCAAAACATTTCCTGCATGTTCGCGAT 135200 28 100.0 32 ............................ TGATCCGCAGATTGTACCGGCGTCGACCACAG 135260 28 100.0 32 ............................ AGACCGATTTTATCAGCCAGGGGGATGATCAC 135320 28 100.0 32 ............................ ATGTACTGTGCCAGCAGCTGAATGCGGAAGGG 135380 28 100.0 32 ............................ GCAGTGTCGCGTTCCAGAAACAGCCTGATTTT 135440 28 100.0 32 ............................ AATATAAATTGCCTGAATTTCTTGCGCGTACT 135500 28 96.4 32 ......................C..... ATTTGCCGAAAATGCTGCCGCAGTTGTATTTG 135560 28 100.0 32 ............................ AGTATCCTAAAGAACCGTTGCGGCGGCGGTTG 135620 28 100.0 33 ............................ TCTACGTACAGCAGAGTAAAGCATGAAGTCAGA 135681 28 100.0 32 ............................ TTCCTGGTTTCACCATCTACAGCTTTCACCTG 135741 28 100.0 32 ............................ TTCAGGGATATTCGCGATGTCCGCCTGAGCAG 135801 28 100.0 32 ............................ ACAAGTTGTAGGCGGCCATCAGGTAGAATTTT 135861 28 100.0 32 ............................ ACACCAAAATGGCTTCATGGCTCATTGAGTGG 135921 28 100.0 32 ............................ ATCAGAGTGCCGGCAGCTTTATCGCCGGCACG 135981 28 100.0 32 ............................ TCAGAGCGGTGATTTCTGCGAAGGTTGTAGAT 136041 28 100.0 32 ............................ TTACAGGTGACATCGCACACCCCTGATACCTC 136101 28 100.0 32 ............................ TGTGGCAGCCGAACAAAAACGGCGACGGGATT 136161 28 100.0 32 ............................ AGTGCAGCAAACCAGAGAAGGGCGCGCCGGCT 136221 28 100.0 32 ............................ AGAAGAAAAGGCAGACCCGATCAACGAAGAGA 136281 28 100.0 32 ............................ GTATTCGGTCCAGTGCCTGATGGCGCGGATGC 136341 28 100.0 32 ............................ CGCCGCGAAACTGGGCCACGCCTTCAGCTGCT 136401 28 100.0 32 ............................ ACCAACAAACTGCAGGCAGAGCAGAAAGCCGC 136461 28 96.4 32 ............G............... ATACGCCGTGATGAACTGAACGGAATCCCGAT 136521 28 96.4 32 ............G............... AAACTTCGCGCGGATTTCAGCGATTTTGTTTA 136581 28 96.4 32 ............G............... CGCTACTCCGCAAAAATGAAATTCGTGTGCTG 136641 28 100.0 32 ............................ ATGTTGCGGAGAATCCACAGCCTGTTCTCAGT 136701 28 100.0 32 ............................ TGCACGAAATCAACGTTGCCCGCTCGGTTGCC 136761 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTTATCCATCAGGTGGTGGATAAATTTATCGTCGAGCTGCAGGTTCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTCAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCAATGGCGCGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAATGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGACAGGTGACCGTTGAACTGGATAAAGAGAAAAATGCGCTGACCTACGACTTCCAGAGTGCGCAGAAGCACAAACCGGAAGCTGCGCATTAAGTTTCGGTACTCAGTGACAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCTATGTCCTGGACCCTTTTTTATTCCACTTTTTAACTTGTTGATTTTAATAAAGAGAAAATATAGCGTAAAATTATGGTGGCAGAGAGGATGTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTTGTTCGTTCA # Right flank : AAGAGCTTGCCCACACTGCTGTGCAAGCCAAACGAGTCTAAAGAAATTGCCAAAGTAATAGGTTATTTTGCAAGTTGCGATGAATGTCACCGTATTGCATCTAATATACTGTTTTTATAAACAGCTATCGACTTTGAGCCACAGGATGTGACTATGCCCGCGAAGTATATTGCCCCCTCGGATTTAAAAACGATACTCCATTCAAAACGCGCCAACATTTACTATCTGGAAAAGTGTCGTGTGCAGGTTAATGGGGGGAGAGTGGAGTATGTTACCAGTGAGGGGCATGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCCATTATGCTAGGAATGGGAACCTCTGTTAGCCAGGCAGCGATGCGTGAGTTCGCCCGCGCGGGTGTGATGGTAGGTTTTTGTGGTACGGATGGCACACCTTTATATGCCGCCAATGAAGTCGATATCGACGTTTCCTGGCTATCGCCACAAAGTGAATATCGACCAACGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //