Array 1 882516-883555 **** Predicted by CRISPRDetect 2.4 *** >NC_011745.1 Escherichia coli ED1a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 882516 28 100.0 32 ............................ ATGCAGCGTTTGTCACTAAAACACTGGTCAAC 882576 28 100.0 32 ............................ TGGTATACCTGGAAGTTCGTCCTGTTAAACAG 882636 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 882696 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 882756 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 882816 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 882877 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 882937 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 882997 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 883058 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 883118 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 883178 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 883238 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 883298 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 883358 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 883418 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 883478 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [883526] 883526 28 78.6 0 CC..................A...C.CT | T,C [883544,883548] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 892615-893424 **** Predicted by CRISPRDetect 2.4 *** >NC_011745.1 Escherichia coli ED1a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 892615 28 100.0 32 ............................ TGCAAACGCTACTTGCTCATTGACCACGTAAG 892675 28 100.0 33 ............................ GGTTAGGGGTATCGGCGCGCTTGACCTCCTGAG 892736 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 892796 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 892856 28 100.0 32 ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC 892916 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 892976 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 893036 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 893096 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 893157 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 893217 28 96.4 32 .G.......................... AGTTCGCGGCAGACATACACGCCGGGAGTTTT 893277 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 893337 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 893397 27 92.9 0 .......................-C... | T [893417] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //