Array 1 1453310-1457119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPQ010000001.1 Flagellatimonas centrodinii strain R2A-3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1453310 28 100.0 32 ............................ CTGAGCCGAGGCAGGGGGCGGCAACGCCCCCT 1453370 28 100.0 32 ............................ ATCGCTCACTGCTGGCCCATAGCGACGGATCC 1453430 28 100.0 32 ............................ ACAGTTGCTGCCGTCGTGCGCCCCACCTGCTG 1453490 28 100.0 32 ............................ GTCATGAGGCCGCCGAAGGGATCGAAGACCGT 1453550 28 100.0 32 ............................ TGACCGCGTGGACCAGCTGGTGAACGTGGTGC 1453610 28 100.0 32 ............................ TCCGCGCTGATTTTCTCCATCGCCACGATACG 1453670 28 100.0 32 ............................ TTGAGGCAGGTGCCAAGTTCGACCCGGTGGCC 1453730 28 100.0 32 ............................ TTCCCCGTCGGTAGGCATCGCGCGCCTGGCGC 1453790 28 100.0 32 ............................ ACCGCCACCGAAGGCGAAATCGAGTGGAACCG 1453850 28 100.0 32 ............................ ACGGCCCCCACACCTAACACGGAGCACACACC 1453910 28 100.0 32 ............................ ATTCTCCGCCTTCACGATCTTGAAACTGCATC 1453970 28 100.0 32 ............................ AGCTCATGCATCACTCCGCTTTGAATGGGGAC 1454030 28 100.0 32 ............................ GCCTCGCATGTACCTGCGGGCCGGGCGCTATT 1454090 28 100.0 32 ............................ GTTTGTCACCGTCCGGCCCGACCGGTGGAAGC 1454150 28 100.0 32 ............................ TGGACGCATTCGACATCTGGTCCAGACGTGTG 1454210 28 100.0 32 ............................ TCGAACAGCCGGGGGGCGCCCTCGCGGATCGA 1454270 28 100.0 32 ............................ AATGGCCAGCGCGACCTGCAGCGGCAGCCAGC 1454330 28 100.0 32 ............................ TGATAGCGGGTCGTCAACGGCAGGCCGGTGTC 1454390 28 100.0 33 ............................ CGCAGGGTTGCGTCAGCCAGCGGTCGCTTTCGC 1454451 28 100.0 32 ............................ ATTGAGGCCGACATCGAGCACAAGCGACAGAA 1454511 28 100.0 32 ............................ TCGGCCGCGATCAACATCGAGTGCTCGCCGAG 1454571 28 100.0 32 ............................ GTACACGTTGTCCGGCGTCTCGCCGGTCTGGT 1454631 28 100.0 32 ............................ ACATCCCCCGGCGACAGCGATAGCCCGAGCAT 1454691 28 100.0 32 ............................ TCACGTCGAGGGGGTGTGGGACACGCCGAACA 1454751 28 100.0 32 ............................ TTTGCCTTGGCCTTCGCCGCGGCCTTCCGCTT 1454811 28 100.0 32 ............................ TGCCCATCGAGGGCAACTGGTTCGGCTCTTTC 1454871 28 100.0 32 ............................ TGATCGAGCTGTGTGCCGTGACGATGCAGCTC 1454931 28 100.0 32 ............................ TGATTGCGCGGGGGCACACCGTGGCCACCGTG 1454991 28 100.0 32 ............................ ATGGACCTGGAGGGCAACACGCTCCCAGCGGC 1455051 28 100.0 32 ............................ ATTCCGGGATGCGGTCACGGGCGGCGCTGCCG 1455111 28 100.0 32 ............................ AAAGGATGACCGGAATTCATGGGTCAAACCAA 1455171 28 100.0 32 ............................ GTGCGGTAGCTTGGCGTTGTATGCCTCGCGGA 1455231 28 100.0 32 ............................ ATTCCGTGCGGTGCCGGATCGCGCCACGGTTT 1455291 28 100.0 32 ............................ ATCCCGGTCCTCGACGGCCGCGCCGGCCGCGT 1455351 28 100.0 32 ............................ TGCAACGCCGCGGGGCAGATGGTGAGCAGGTG 1455411 28 100.0 32 ............................ TACCAGGATGACCTGGACAGCATTGCCACCGA 1455471 28 100.0 32 ............................ TGTTCTCGAACTTCGAGCCGGTGAAGGTGCGG 1455531 28 100.0 32 ............................ ATCGGAGACGAGACATGAGCGACGAACTGAAG 1455591 28 100.0 32 ............................ AGGTCGAACCCGTAGCTGCGGGCAGCGACGGT 1455651 28 100.0 32 ............................ ATTGCCGACTTGGGTAGGCGGCGGGGTGTCAG 1455711 28 96.4 32 ..................G......... AGGGGATTGCGGTGTAACCGTCGGGGAAGCCT 1455771 28 100.0 32 ............................ TGCTCAAGCTCGGCGGTGCTGAGGTTCCCCAT 1455831 28 100.0 32 ............................ ATTGCATTTGCGCGTTCGGAAGGGTGGCGCGT 1455891 28 100.0 32 ............................ TGCGACAGACCCGCGCCGGGCTCATCGCCATA 1455951 28 100.0 32 ............................ AACAGCGCCAACATCCCAATCAATAAGCGCTT 1456011 28 100.0 32 ............................ ATTGCCTCATGTATGGGCATGGCTTCCACGGT 1456071 28 100.0 32 ............................ GCGAAACGTTGCCGGCAGCAGTGTGTCGCGCC 1456131 28 96.4 32 A........................... TGTTTGTGGCAGATGTAGCGCGGCAGCCCGCG 1456191 28 100.0 32 ............................ TGGGGGGCACTGAGTCGCCGCATGCGGGGATG 1456251 28 100.0 32 ............................ GGTCGAACAGGTCGGCATCGATGCCGGTAAGG 1456311 28 100.0 32 ............................ AGGGTGATCTGCGATGAAGTCCTCAAGCCGCT 1456371 28 100.0 32 ............................ TTCACGATCCGATCCCAATCGATCTGCGTCAT 1456431 28 100.0 32 ............................ TTGTCACCTCCGAACATCAACAACTCGACTTT 1456491 28 100.0 32 ............................ TCGCCCGACTTTGGGACACTCAACCCGCTCTC 1456551 28 100.0 32 ............................ ATGACCGCGTAACTCACCCACGAAAGAGTCGG 1456611 28 96.4 32 ...............T............ AGGCATGCGCTTGGCCTTCAGCGTTGGGGGTC 1456671 28 100.0 32 ............................ ATTACCAACTTGGGTGGGAGGCGGGGTATCGG 1456731 28 100.0 32 ............................ TTGATCGCGTGCAACCCGAAGATGCGGTAGCC 1456791 28 100.0 32 ............................ TGATAATGATGGCCCATTGATCTACTACCTCA 1456851 28 100.0 32 ............................ TTCCTCGCTGTTATCGGCGTTCGACCGCACCG 1456911 28 100.0 32 ............................ AGGGTGATCTGCGATGAAGTCCTCAAGCCACT 1456971 28 100.0 33 ............................ AACTGCTCCTCAATGCTTCGTCCATTCCCCGCC 1457032 28 100.0 32 ............................ TGCACTCAATACCGATCTGTTCCCCAATCATC 1457092 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.8 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCCATCGCTCCAACGGGTTATGGACATGCCCTGGCTTACCGGCATGACGGATCATGCCGAGGTCACCGATATCAGTCCCGTGCCGGCGGATGCCAAGCACTGCCACGTCCGCCGGGTTCAGGCAAAGAGCAATCCGGACCGCTTACGTCGGCGTCAGATGAAGCGGAAGGGCTGGACCGAGGAGCAAGCTCGCGAGGCCATTCCAGACAGTGCTGCTGAACAGCTCAGGCTTCCCTACCTGACAGTGCGAAGCACCAGCACGGGGCAGTCCTTCAGGCTGTTTGTTCGCCAAAAGCCAACCAGCGGTCCGACCCCCGGCACGTTCAACACCTACGGATTCAGCGGCACCAGATCCGTCGCCTGGTTCTGACCCTTTTTCCGCGCCTCCCCGTAGCTGCCTGATTAATCAGGCGGTTACGGGCTTTTGTGGGAGAAGGGGCCCTGCACGATAGAGTGCCCAAATGCCCGCCCTGGCTAGGGCGGTTGTGGGGCAAACTCTA # Right flank : ACCCAGTCTCAACAATGCCGACAGCAGTACTGATCGTGCAAGATCGCCCAGCACCTACTTTCTCGCGCCCCGCTCCTTGGCGGTGCCCTCGTGGAAGTCCTCCACCTCCCGAGCCAACGCCGCCGCTCCATAGACCGCAGCCGGAAACCCGTTCTCAGCCATCAGCTTGAGGAAGTCATCCCGGCACATCCCGAGGCGCGCGGTGCCGGTGCCTTGGCTGATGGTGCCCGCTTTCACTTGGCGCAAGACTGCGGCGCGGTCGTCGCCAGTGGGGGCAAAACGCTTGTCGGCGGGGTAGGCCATCTGCAAAAGATACTCCTCAACGCGATATGCTTAAGCCGCGCTGCCAGTGCGCCACGTATCGTCGGGCCCATAACCCGGTGCGTTCTGGACGTTGAGATAAGGGTGTGCTGGCAGCGCACTTATCCATGCCGACGTCACAGCACCATGCCACTTGCCCAGGCGCCGACGTAACGGCAAAGTGATGGCGCCTTGGCCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //