Array 1 63529-64534 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLNK01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07239 WH-SGI-V-07239_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63529 29 100.0 32 ............................. CAGGCTGCTTTTACCGGCGCCGTTGTGTCCGG 63590 29 100.0 32 ............................. TGGGAGGAGCGGGAAGGAAGTGACGACCAGGT 63651 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 63712 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 63774 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 63835 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 63896 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 63957 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 64018 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 64079 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 64140 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 64201 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 64262 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 64323 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 64384 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 64445 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 64506 28 79.3 0 A..........A..C..-.....A....T | C [64510] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73707-75750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLNK01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07239 WH-SGI-V-07239_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73707 29 100.0 32 ............................. TGCGGGTTGTTGCTCATCGGGAATGGGTCCTA 73768 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 73829 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 73891 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 73952 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 74013 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 74074 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 74135 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 74196 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 74257 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 74318 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 74379 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 74440 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 74501 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 74562 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 74623 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 74684 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 74745 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 74806 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 74867 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 74928 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 74990 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 75051 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 75112 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 75173 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 75234 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 75295 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 75356 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 75417 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 75478 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 75539 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 75600 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 75661 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 75722 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //