Array 1 96395-98131 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ954254.1 Novosphingobium sp. FSW06-99 PRJNA299315_s004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96395 29 100.0 32 ............................. GAGCCAATCCCCATGCCATTGCCTTCGATCCT 96456 29 100.0 32 ............................. GAGCTGGGCCTGCCAGGTGACCTCAGGCCACA 96517 29 100.0 32 ............................. CTGGCCCATCCATTCCATGCCCAGTCGCTTCA 96578 29 100.0 32 ............................. TATCCTGACAACGACATCCCTGGCTGTTGCAC 96639 29 100.0 32 ............................. GCAATCCGGTCGATCCCGGCGCCGCGCTATGG 96700 29 100.0 32 ............................. GATCGCGTAATGGACCAGGTCCGCATCGACGT 96761 29 100.0 32 ............................. TATCAAGCGGGGCTGCGCCGGGTGCGTCGATC 96822 29 100.0 32 ............................. GCCAGGCTGTTGAGCGTGGTCGAGCCATTGGC 96883 29 100.0 32 ............................. CCTTCGTTGGCGATCTCTTCGTCGGAGATTGC 96944 29 100.0 32 ............................. ATCGATGGGCTGTACCTCAACCAGTCAGGGCT 97005 29 100.0 32 ............................. TCGTGTAGCCGCCGCCGCAATTTACCGTGGTG 97066 29 100.0 32 ............................. CACCGTATGATCCGGTGTTGAACTTGCCCGAC 97127 29 100.0 32 ............................. CAGCGCATCCAGCGCGCCCGCGCCACTGGAAT 97188 29 100.0 32 ............................. CAGCCAGGCCGCGAATGTGGCGCATTCGAACA 97249 29 100.0 32 ............................. TCTTCGCGCTGCATCATTTCGGTGACGAAGCC 97310 29 100.0 32 ............................. TGTCCGGGCCTTCGTATTCGGTGACCACGCGC 97371 29 100.0 32 ............................. GGCCTCCACAGCAGCGACCCTAGCGGGGATGG 97432 29 100.0 32 ............................. GCGATTTGCCCATATGCCCCGTTGTCGATGAT 97493 29 100.0 32 ............................. CTGTGGGAAGTTACCCGCGTGCCTGATCTTGC 97554 29 100.0 32 ............................. CCTACGCGGGCACCGACCCGGTAGCCCAGGGG 97615 29 100.0 32 ............................. CCGCTTGTTGCTTGCTCGCCTGTGCCGATAGT 97676 29 100.0 32 ............................. ACGGAAAGCGCCATTCTACAAGGGTTTACGTG 97737 29 96.6 32 T............................ GTAAAACGCAGACCGCCGCGCAGTCTTCGTCG 97798 29 100.0 32 ............................. GATTAGTATCGTGCAGTACGCTCCATCGAACG 97859 29 100.0 32 ............................. ACGGCCTTGGCGCTGTCGGACGCGGTCGGCGC 97920 29 100.0 32 ............................. CAGATCCGCTTGTACAGACCATCGGCCAGCGC 97981 29 100.0 32 ............................. GGAGAGGAACTTTGGGACATGGTGGGCGACCC 98042 29 100.0 32 ............................. ATCGACGCCGCAGAACGCGATTTCGCCGTACA 98103 29 93.1 0 .......................A....A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : CTACGTCAACCTAGTTCGGAGTCCTGGACCGCCCAAAGTGTACCCGGCTTGGGGACTGGCGGAGCGGTTAGCACCAACTAGGCTGCCGATTCGTACATGGTCGTCCCCTCGCTTCATGCGAGCCTTGATCATGCCCTCGGACGGTACAATGAATGGGGCCAGCAGGATGGGTATCATGCTGCCGACATAGGACTCCTCACTAAGGAGAGGATCTCTCGGTGTGTCGTTGGGCGGGGGCGGGAGATCGAAACGCTAGGTCGGCAATTCATCATCGCCTGGCAGGTAAATCTGCAGGACTATTGTGGATGGCGGCACACGGCGAGTTGCTGCGCGTCGATTTGGAGTGAGTGCGGCGGCGGCGGTTCGTCTGAGGCACAACTGGCACCCGCGCCTTGGCACCTTGACAGCCATCCGGAAAAGGGGTGCTAAGGGCACCTGAAAATCGGTAGGTTCTTTGACACCTGTAAATTCGCTTACGATTGAATATCTTGCAAACAAGT # Right flank : AAGATCTGGAACGGTAGTCAGCCCTTTGACACCGGAGCCTTTGCATTCCATTCTTGGGTCATCTGCGACAAAGGGCCGAACCAATGTTGACCAGCCTGCTGGCGTGGCCCGGCAAAAGCCCGCGGGACGAGGGTGGGGTGTTTCACCCGGCCGCCTATCATATGCTCGACGTGGCGGCCGTGGCGGTGGAATTGCTGGCGGTGCCCGGGCTGGGGCCGGGGCATACGCTCGCTCGGGATGCGCGCGATGCGCTGGTGTTGCTGACCGCGCTGCACGATCTGGGCAAGATCAACCCCCGCTTTCGCGCGATGCTGCTGCAAGGCGACAGCCAGGGGACCAAGCGGCATTGGGAGGTTTCCGAAGCCTATCTGTGCGCCAGCGACATCCAGCGCGATCTGGCCGCGCATCTCGATTGTTCGCGTTTTGCGCTCGAACCTTTGGCCTCGGCCACGGCGGGCCATCATGGGCGCCCGGCGCGGATCGACAAACAAAGTCTGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106755-107576 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ954254.1 Novosphingobium sp. FSW06-99 PRJNA299315_s004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106755 29 100.0 32 ............................. GCGCCTACACCATTGCGCAGGACTTCCCGCGC 106816 29 100.0 32 ............................. CCTATCTGCTATGTCGTCAGGGCCCATCCTGT 106877 29 100.0 32 ............................. GTTTGCGCCCTCGACAAAGCTGGCGATATCGA 106938 29 100.0 32 ............................. ACGGCCTGCACGTGCATTTGCCGCAGCTTCCC 106999 29 100.0 32 ............................. TCTCTCCCGGCGTCACCGAGACGGTGCCGGAG 107060 29 100.0 32 ............................. AAGTTCCTTGCCAAGAAAAGCCCGAAATTTCC 107121 29 100.0 32 ............................. CCGATCACGCAAATCCCCTATCTCGATCAGCT 107182 29 100.0 32 ............................. CGGCGCTGGGCAACGACATGGCGATGATCGCC 107243 29 100.0 32 ............................. CAACGTCTCCACGCTTGTCGGCGCTGCTGGCG 107304 29 100.0 32 ............................. TGATCACCGTGGCGGGGCTGGTGGCGATGTTG 107365 29 100.0 32 ............................. CGGTGCCATTGCAGAGCACGCGCCCGGTGACC 107426 29 96.6 32 ............................A TAATAGCACCGCTGCGACCCGTCGATGGTCGA 107487 29 100.0 32 ............................. GCCCCGCGCCCCCGCAATCCTCAACCCGCGCG 107548 29 86.2 0 .................A....A...T.T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 CTGTTCCCCGCGCGTGCGGGGATGAACCG # Left flank : GCAGTGGGCTGTTGGCACAGATCATCCCGCGCATCGAAGAGGTCTTGTCCGCCGCCGAAGTGGCCCGGCCAGAGCCGCCCGCCGATGCCGTGGGCCCGGCTTTTGAGGACGAACCGGCGGGCGGCGACGAAGGGCACCGGGGATGATGCGGCGATGATGGTCATCGCGCTGACCAATGCCCCGCCGCGCCTGCGCGGACGGCTTGGCGCATGGTTGCTGGAAATCCGCGCCGGGATCTATGTGGGCGATTACGCCGCCCGCACGCGCGAACGCATCTGGGGCGAAGTGGAAAACGCGATCGGCGAGGGCGATGCGGTCATGGTATGGACCGCCCGCACCGAACAGGGATTTGACTTCCGCACCGCCGGCGCCAACCGCCGCATGCCGGTGGATTTTGACGGGCTGAAACTGGTATCCTTTCTGCCGCAAAGTTGACGCGGAAAATCGGTAGAGTCTTTGACATCGTAAAACTGCTGTGAAATCAGACCTTTCCACGAAGT # Right flank : TAATTCGACGGTCACAGGCTCGCGGTTGAAAGTCCGGCGCAATATGCGATGACAGGCTTGCTGGCCCGAGGTAGAAAAACGCTATTGCGACGCGGACATGGCTTTGGCCATCTCTGAGATGAGGGATACTCGGCGACCCTCCGGGCCAGCATCGCAGGACCTTTGGGGCAGGGCCCGGGCGCTATTGGGCAAGGGCGCGGCGGCCGTGGTCGCGCAAGGTGCCTTGCGGGTCGACATAGCGGTACAGCGTTACCGGTTTGATGCCCAGTTCGTGGCATAGCTCGGCCACGCTGGCGGCCCCGGGCGCGCGCTGCGGCTAATCCGGCCAGCGAGGCGAATATTCCAAACGACTGGCAGCCATCGGCCTTGGACACGCGGGCATGGCGGATCAGCAGGTTTCACAAACGATCATAAAGGGTGGCGGCAACGATTTATGATAACGCACCGGAGGGTACCGCACGCGGGGGGCGGCGTTTCAAAAATGATCGATATAAGAGGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //