Array 1 63892-63254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIT010000021.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63891 29 100.0 32 ............................. CCGAATAGACAATGACCGCAAAGTGTCTATCG 63830 29 100.0 32 ............................. CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG 63769 29 100.0 32 ............................. AGCCAGACACATTGCTTTATCGCGCCACGCTG 63708 29 100.0 32 ............................. GCGAGTAAGAGTACTGAGTATTTTAATCTCAT 63647 29 100.0 32 ............................. GCCATAGACTTTATTAACTTCATTGGGGGTTA 63586 29 100.0 32 ............................. CGTATCACAACCGGCCTCAGTACGTATCAGAA 63525 29 100.0 32 ............................. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 63464 29 96.6 32 ..........................C.. CAGGGAAACCGTTCGTACTTATCGACCTCAAC 63403 29 96.6 32 ..........................C.. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 63342 29 93.1 32 ............T.............C.. GACGCACTGGATGCGATGATGGACATCACTTG 63281 28 72.4 0 .A.........C..T....T-.G..C..C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.2 32 GTGTTCCCCGCGCCAGCGGGGATAAATCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGATCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAATCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10526-9216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIT010000029.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10525 29 100.0 32 ............................. AGTTTGTCGAACACGGAGCGGAGCATACCCGC 10464 29 100.0 32 ............................. GCGACGGTACCTGTGCGCGCTGAATAAAATAA 10403 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 10342 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 10281 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 10220 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 10159 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 10098 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 10037 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 9976 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 9915 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 9854 29 96.6 32 .....T....................... GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 9793 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 9732 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 9671 29 96.6 32 ............................A CGCCGAGGGATTTTAAATCAGGTGTTTAAAGC 9610 29 100.0 32 ............................. AGCTTTATTGTTTTCAGGGAAAATAACGCGGC 9549 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 9488 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 9427 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 9366 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 9305 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 9244 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGCCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCTTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //