Array 1 511-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJO01000028.1 Gallibacterium anatis strain F 279 contig000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 510 36 100.0 33 .................................... ACAAGGCGGTTTCTAGATTCAGGCGTGTTGGAA 441 36 100.0 34 .................................... AACTCTTCCTGTATACGCTCCGCTTCTTCCAGAA 371 36 100.0 34 .................................... AACATAAACTCAGGATCTTGCATATCTAAGAGAT 301 36 100.0 36 .................................... CGTTGGTCGGCTGTAAATTGTTGTTGATAATTACTT 229 36 100.0 33 .................................... GAGTCCGCCTGAGAGGTTACTCTTCAATAACCT 160 36 100.0 37 .................................... CGCTAAACTGGTACTCATATCCGTCTGTATCTTCAGC 87 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCATTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : CAGACGCTCCGCTTCTTCCAGTATTTCCTGTACGTTCTAACCTAGCCCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 40797-39231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJO01000034.1 Gallibacterium anatis strain F 279 contig000032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 40796 32 100.0 37 ................................ TATCGCCTATCTTACTGCATTGATCAATGAGGCAGTA 40727 32 100.0 35 ................................ GCTAATCTTGCCAATCAAAACATCGCCAAGCGTAG 40660 32 100.0 34 ................................ AATTTCCTTTTCCATAAAGGCTTTAATCGAAGTG 40594 32 100.0 34 ................................ AAAAAATACGAGTGATAAAACAAAAGAATTCGGA 40528 32 100.0 35 ................................ CTCATATGAGAGAGCAACATAAGATTTTATTTCTC 40461 32 100.0 34 ................................ ATACGTTTTTACAGTTAGATGTTAAGACGTGCGT 40395 32 100.0 34 ................................ GGCGCACTTGGACCCCATACAATATCAACACCTA 40329 32 100.0 35 ................................ AATTCAGAAAGCATTGCAATTAGCCGCCGCTACTA 40262 32 100.0 34 ................................ GCCTAACAATACTATCATTCATCATTAGGCTGTC 40196 32 100.0 34 ................................ AAATATGTCGTTTGGCAACGTTTTACCGGAAACA 40130 32 100.0 35 ................................ CTTAGGGAGAATTGCTTTGACTTAGAAAGAGGCAA 40063 32 100.0 35 ................................ TACCCTATGATATAGCTTTCCACATCCCTTAAATG 39996 32 100.0 35 ................................ AAAATTCATTTTTCTTTTATTCAGTAAATTTTCTT 39929 32 100.0 33 ................................ AATGAGGGAAAGCAAAAACTTTCTTTCATTTAA 39864 32 100.0 35 ................................ AACCGCTATTTGTGAATTTTCGGGAATGCCCGGAA 39797 32 100.0 33 ................................ CCTCTAAATCAAGCGTTTGAAATGCTTTAAGAC 39732 32 100.0 35 ................................ AATCATCTGACAAAGTTCATCACAAAAACCGTCAA 39665 32 100.0 35 ................................ TTTGAGAACTTCAAAACTTTTTAACGTCTTTCTGT 39598 32 100.0 35 ................................ ATTAAGACGGTGTATTATCAATCAAAATACGATAA 39531 32 100.0 35 ................................ AATCATCTGACAAAGTTCATCACAAAAACCGTCAA 39464 32 100.0 34 ................................ AAGCTCCTGTTTCTGCTGATCGGTAATAGTGTAT 39398 32 100.0 35 ................................ TTCTTCTCTCTCTTCAATTTCTTCAATTTTTTTAT 39331 32 100.0 37 ................................ ACACTGATTTTAATACCCTCTTAACTCGATTAAACAG 39262 32 87.5 0 ............C..............T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 99.5 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTTCTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : CAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 14930-14191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJO01000058.1 Gallibacterium anatis strain F 279 contig000056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 14929 31 86.1 34 -----............................... CCATTTCCAAATTTTTAAAGAGCATAAGAGGATT 14864 36 100.0 34 .................................... ATATGCGAAATGGTATGGGCGGTTTCTATAGGTT 14794 36 100.0 35 .................................... AATGGATCTAGGCTAAAGGTTTCTTTGTGGTATGC 14723 36 100.0 34 .................................... GTTGCCTTCTTCCGTTGGCACGGTTTTATCCTGC 14653 36 100.0 36 .................................... TCGATTGGCTACTGATTACCTGTAGTCAATCCCTAA 14581 36 100.0 35 .................................... ACGCATCCTGCCTTTGCTATCGATAATATGCAAGT 14510 36 100.0 36 .................................... GCGGACGGTTTCGTCCTGCGCTTTTTCCAATACCGA 14438 36 100.0 35 .................................... CGGTCGTTTCCAGATTTTTAAAGAACAAGAGAGGA 14367 36 100.0 36 .................................... ACGTGGATCGTCGTCATATTCGCCATTGATCCTGCC 14295 36 100.0 33 .................................... GTATCCGCCTCCGCAATTCAAACTCGAATTGAT 14226 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 97.5 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : | # Right flank : TATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 6004-4777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJO01000093.1 Gallibacterium anatis strain F 279 contig000086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6003 36 100.0 30 .................................... ATATGAAGACGGATCGAAAGCGTTGTTACA 5937 36 100.0 30 .................................... ATATAATAGCAATCTACACAATCGCATCCG 5871 36 100.0 30 .................................... CAAATGGCGGTTTAACTGTTATCCGTTTAA 5805 36 100.0 30 .................................... CCACCACGCATTCGTATTATTAGAAAAATC 5739 36 100.0 30 .................................... AAAAAAATCAGTTTCTAGGCTCTAGTTTGG 5673 36 100.0 31 .................................... TAATAAGTAAGCAATCACTATCACAAATTCA 5606 36 100.0 30 .................................... ATGCACGTTGCAACGGGTTAGAAACGCTTT 5540 36 100.0 30 .................................... TAAAGGACGGGGAGGATGTCAACTGAAAAG 5474 36 100.0 31 .................................... TAAATAATGGAATTTCAATAAAGCGTCGGCA 5407 36 100.0 30 .................................... CCATTTTTAGGTGATGTAAGTCCCGATAGC 5341 36 100.0 30 .................................... CGTGTGCAAATCCATTACTCATCCCCTTTA 5275 36 100.0 30 .................................... ATTACCCAAATGATTAAACTCGGCTTTTTT 5209 36 100.0 30 .................................... AGAATTTCTGAATTACCTAGCACTTGTACA 5143 36 100.0 30 .................................... AATAACAATCTATAACGTGCGTCCGCCGTG 5077 36 100.0 30 .................................... ATCTACTCAACACAACAATGGCAACAATGT 5011 36 100.0 30 .................................... TTGCTTGCTATCTACTCAACACAACAATGT 4945 36 100.0 30 .................................... TGCGTGGCAAGCATTAAAACCGCATCCACG 4879 36 100.0 31 .................................... GGTATTGGTACATCAAAAGCTACTATACTTG 4812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Left flank : GCAGTGCTACACTCACGATACACGCCGAGAGGCGTTGTCAAG # Right flank : AGGTAACGAAAAACCCCTTGAAATTCAAGGGGTTTTATTCGTTCTGCAATAAAAAATTTATTGAAAAAAGTTCTATTTTTATCACATAAATTATCTTTTTAGAAAAGAAGCATCTGATCTGAATTCACTTTTTTCTCCTGTAAGTTCAATTCACCTAGCAAAATATTCATAGCGGCAAATTGTTTTTCTGTTACCTCTAAACAACGAATATAACCCTCTTCTGGTAAATTCGCACATAATCTTTTATGATGTTTCTCTAAAGCATCTCTTCCCCTAATAATACGGCTATAAACAGATAGTTGTAACATCTGATAACCATCTTTTAACAAAAATTTTCTAAATTGATTAGCTGCTCTACGTTTAGCTACTGTCGTTACCGGCAAATCGAAAAAAACAATTAGACGCATAAATCTTCCCTCACTCATAATGATATTCCTTTATTGGTAGAATAACTGGTAGTTTTAACATATTAGGATTTTTTGCTAAAACAACTTGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //