Array 1 497735-497487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================ ================== 497734 39 100.0 32 ....................................... GGTCGCTAGCGTCATCCGAAGACTGACCAACT 497663 39 100.0 29 ....................................... AGCGCCTGTTCTAGCTGAGTCTGAGTGAT 497595 39 97.4 31 ...................................T... CGAACCCATGGAAAATGCCTTCGGACAGCCG 497525 39 94.9 0 ....................................G.A | ========== ====== ====== ====== ======================================= ================================ ================== 4 39 98.1 31 GTTCAAAATCCATTACCCCGCAAGGGGACGGAAACCTTC # Left flank : AACCCGGCAGCATGGTCTAGCCAAATGGGTGGAGCTACCACCGTTTAGCAAGCACAGTTTGGGGCGGAGCAACATCAAAGCTAAAATTCACGACTGCGATCTGGTTGTGTTGATTACGGGGTATATGAAGCATAAGCAAACGGATAGCATCATGCAGTTGCGGAAGGTGGAGTGCTTGTCGGGGGATGTCTTACTGTTGAACTGTCGAGGGAAGAGCGGAGTCGTGCGAGAGATTTTGGCCTACATTAGCCAAAAGAATTGTAAAGTCTAGCCTCCAAGGCTTGATGGACTAGTCTGGGGTTGCTAATCTGAGGGGGTCTGGTGAACCTTGAAAACCTTATAACTTCGTCAACCCCCTCAGATGCCTTTCCGTACAAGGATTTGAGCCTTGTTGGCAGAGGGCTTGTTGACAGAAATTCTCAATTCCTCACCCCTCGGACAGACCCCCTCAGATTTGGGGTGTTGAAAGCCTTGCCTCATAAGGGCTCCAGATCAAGGGG # Right flank : AGCAAGGCAGAAGGCGAAAGGATGAAGGATGAAGGGACTGGGGAAATTTGCCCAGCATTTTGAACAGCTCTGACCCTAGCCACCAGCCAGTAACCCGTTCTGCCTTTTGCCTTCTGATTTCTGCCTTTCCTACCCCCCGCAAGGGGACGGAAACGATAGAAAATCAGAATGATGAAGGATGAAGGATGAAAGGGGGGTCTGAAGGTCGCCTAGGTTGCCGCCTTCCACCGCGCCAGACTCTTGACCCGACCCGACTTGTGCCCCCGAGACATTTGCTGCTTTTCTGCCTTCTTCATCCTTTAAAAGGGGCACTCTAATAGGGATCCCTATCACCTAAACTCATGCCCAGTGATTTGAAGCAACGGACCAAAGCCTTTGCTCTACGAATCATCCGCCTGTATTCCGCCCTGCCAAACACCACCGTGGCCCAGGTTCTTGGCAAACAAATCTTGCGTAGCGGCACCTCAGTGGGTGCTCACTACCGAGAAGCTCATCGTGCC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCCATTACCCCGCAAGGGGACGGAAACCTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 707050-704070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 707049 30 100.0 43 .............................. CCAAAGCCATGCTGCCAGAGTGTCCGACATCATTGAGGTCGCC 706976 30 100.0 48 .............................. CTGGGTTTACTGTTTTAATTTCACGTACTTCGTTATCAATGAGTCGCC 706898 30 100.0 49 .............................. AGACAATTATTTCACGCCCCGATTGGTTCATCCACGCGGCCAAGTCGCC 706819 30 100.0 45 .............................. TGGGAAAGAGACATGGACGGAGGGACCAGAGTCAATTAAGTCGCC 706744 30 100.0 46 .............................. TCAAATAGCCTGAGGGGATGATTCAACCTGCACAGCAAGTGTCGCC 706668 30 100.0 40 .............................. CCGAGTACTGCTTGTCCAATATGGATATTTTTAGGTCGCC 706598 30 100.0 41 .............................. TAAATCCCCAGCTGAAATACTAAGGAGTGCCTTAGGTCGCC 706527 30 100.0 40 .............................. TGCGTACTTGTCAATTGTGGTCTCGCCTGTCTGAGTCGCC 706457 30 100.0 51 .............................. GCAGGCAAACAGCAGTTAATTCAGCCTCAGCCTATGGGTCTGGAGGTCGCC 706376 30 100.0 42 .............................. GCGACCGACGGGCCTTGAATTGCAACAGATTTACGAGTCGCC 706304 30 100.0 50 .............................. CTCAGCAGCGGGAGTTGGGGAGTCTTGTTTTGTCCCGTCGTTGGGTCGCC 706224 30 100.0 48 .............................. TCTTCGAACCCGTCCTTAATCTTGAATGGGACATTGTTAAAGGTCGCC 706146 30 100.0 42 .............................. TTGTAATCACCCTTCACCCTTATCGATTCTTTAAGGGTCGCC 706074 30 100.0 48 .............................. ATTGTAGATAAGCGCCAACAAATAAACGGCGATGCTCCTTTTGTCGCC 705996 30 100.0 49 .............................. TCCTTGTAATACAACTTGTATTACAAACACGAGGATAGGTTTAGTCGCC 705917 30 100.0 42 .............................. AAAGGTTGCAGTGCGGACTGTCACCCATTGATCCTTGTCGCC 705845 30 100.0 46 .............................. CGTCTCGCCCAAACTGAATACTCTTGCATTTTTCAACTCCGTCGCC 705769 30 100.0 44 .............................. CCTCATTGGCATCTCCCGCCTCGATCGCCTCGATCGCCGTCGCC 705695 30 100.0 48 .............................. CTCCGCAGAGCTCAACCCTTAAATACTCTGCGAATGACTCGGGTCGCC 705617 30 100.0 40 .............................. TTGAGGAGGAACAACGGGCAGCCCCCGATATTTAGTCGCC 705547 30 100.0 45 .............................. TCAACGTATCCCGGGGCGTACTGGCAGATGGTGTATTTCGTCGCC 705472 30 100.0 41 .............................. TCAGAAGGCAGCGAAAAAGCAGCGAAAATCCCTAGGTCGCC 705401 30 100.0 46 .............................. AAACGGAGATGGCTATTGCCCTGCGAGTGTATCAGAAACTGTCGCC 705325 30 100.0 45 .............................. ATCTAGAGAACACTCTTCGCCCTTTCTCGTAAGCTTTAAGTCGCC 705250 30 100.0 41 .............................. CTCTCCCCAGGCTAGAAAACAAGGCTACAGATACAGTCGCC 705179 30 100.0 46 .............................. CAGAGAATCTAGGAGAGCCGAGCACCTGGAGCTGTAGCGGGTCGCC 705103 30 100.0 40 .............................. TGCTGGCTTCTGCGGCTTGTTGCTGCTGTTGGGCCCCCAA 705033 30 96.7 41 ...............T.............. TATCGCTAGCAACCTCCGCGAGGAACTGATCGCGCTCCCAA 704962 30 96.7 47 ...............T.............. CCCATGTTCTCGCCGTTCTCGTCGCAGGTGTCGGCGACCCAACCCAA 704885 30 96.7 42 ...............T.............. GTTTTGGTCGCCCCGGACTTGCACTTCAGCAGAGCCTCCCAA 704813 30 96.7 44 ...............T.............. GGAACAGTTGTTAACAAATCTAAACACCGTTGCATCCGCCCCAA 704739 30 100.0 39 .............................. TCAAGGGCAATTTGGAAATCACCTTCACCCAAAGCCCAA 704670 30 96.7 41 ...............T.............. GTTGGTTTGCGTTTTCATGGACATTCGAATCACCCACCCAA 704599 30 96.7 45 ...............T.............. CCGATGGAGGTGGTAGTCGTGGTGGTCGGGCTGGCCTCGACCCAA 704524 30 96.7 39 ...............T.............. AATATTCGGACACGAGATTTGGGCGTTAACTCCACCCAA 704455 30 96.7 40 ...............T.............. AAACAGAGTCAAGCGATCAATTGCTGCAAGTTGGACCCAA 704385 30 96.7 42 ...............T.............. GATAGGATTTGCATTATGGTTTCAGCAAATCGCTTCACCCAA 704313 30 96.7 39 ...............T.............. GGCTCTGGATCCGGCTGGGGAGCGGGATGCTCCTCCCAA 704244 30 96.7 115 ...............T.............. GGTTTGAAAACCGGAGGACGGAGGACGGAAGACTTGATGCCGAATTACTCACAACCGCGAAAAGCCATTGAGAATGATCCTCCGCTCTCCGCTCTCGTTCTTCCGTCCTTTCAAC 704099 30 90.0 0 TG.............T.............. | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 40 30 98.8 46 AACTTCTTCGGAAGTCGAATTAATGGAAAC # Left flank : TGGCGCGAAAGTCTTGCAAGCTTTTGATGGAGACGGCGGCTCCCAAAACAGCCACCACCCCCACAACGCCGCCAGCCGTTTTCAGGGTCAATTGCACCATGTCGACATAGCGGGCAAAGGTCTCTTCTAGCTCGGCGTTAGCCTCTTTGAGAAACTCGATCTGCTGCCGCAGTAGTTCCAGCTCTTGGGCGGTGGGTGCCGGAGTTTGCGCGATGCCGCTGATCCAATCCACTGGGGTCTCCTCGGGCGTCGATATGGCCCATTATAGGGAGTAGCATTGGCTGCTCTGTGATCTGATGGTGTGCCAGTGTCGCCGCGAGGGATAGCGGAAATGGCTGCAAGGCCCATTCTCTCGTTCTATCCCTCGACTGCTTGTAGGGCAAGGGTTTCAGCGGTTTTAGAGGCGCGATTTGATGATGATCTGGCCGCGGCTGAGCTATCCCTCGAAATTGCACGCTAGAATGCTTACAACCCGGGGCTCCTAGAGCCAGGGGGTCGCC # Right flank : GGTTTGAAAACAGGAAAACGGAGGATGGAGGACGGAAAAGTTCGATGCAGAATGATTTGTGACTCATGAGCTTCTTCCCTCTAAAACTCTCCGTTCTCCGCTCTCGTCCTTCCGTTTTCCAAAGTATTCGTAGGATGGGCATTGCCTTTTCTAAGGCTCAATAGTGCGTGTCATTCATCTACTCAATGCCCATCTTTTCAAAGCATTGGTGGGCAAGCCAAGCCCCTCGACCATTGCTAAGAACAGGGATCATGAATTTGCCCACTCTACTCACTACCGGTTGTCTAGTAGTGGTCCGAGATAATCTCACCTAACTACCAGTTCGGCTTGAACCGGAACTAGAGCCTCTTGAAACTAGGGCAGTCCTATTTAAACAGAGAGCAGTCCGTCTTTAAACAAGGCCAATGTTGTTTAAACAGGGAATGGTTCGTCTTGGCATGAAGTCAGTCCTTCTTAGACAGGCAATGGTCCATCTATAAACAAGACCAATCTTGTTTAAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTTCTTCGGAAGTCGAATTAATGGAAAC # Alternate repeat : AACTTCTTCGGAAGTTGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 826073-832012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 826073 36 97.2 34 T................................... CGCTTGAACACCCGGATCAGTATCCGCAGCGATC 826143 36 97.2 43 G................................... TCACAGTCCTCGCTGAATTCGCTTCATTTTGAGCCACTCACCA 826222 36 97.2 48 A................................... TCAGGGAACAAATTGATTTTGCCGTTCACCCAAATTGCGGCATAGATT 826306 36 97.2 39 A................................... TCTTTATGCTCTGGTCTGTAGAGCTCTGGATTCAGCATC 826381 36 100.0 38 .................................... TGATTAAGTTCGGGAACACAACCATCTGCAGTGTTATG 826455 36 100.0 41 .................................... CCTCGATGTCCTTGAAGTTTTATAGGCTCTTTAGTATCCGC 826532 36 100.0 39 .................................... CTTCTGCTAAGAAAGGATCCATCGTCAAACACGATAAAC 826607 36 100.0 40 .................................... GCTGACGTAGCGCAAACCATTCTTCAGCCAGGAAGCTTGG 826683 36 100.0 44 .................................... CCGTAGGCCCCATTTGCAACTGCGCGAATACAGGATTCCGTGCC 826763 36 100.0 43 .................................... AGCAAGGGTTTCAGCCATTCCTCTCCCTTTGCTATACTCTTCC 826842 36 100.0 43 .................................... TCGGGTATCAGTGCTGCTCCTAGTGCCTTAACCCCAACTCAAC 826921 36 100.0 41 .................................... TTTGGAAAGTAGTTTATATAAATTTAGATGACTCCGAAAGC 826998 36 100.0 41 .................................... TAAATACGGGTGGACCTTCAAAGATTTTGATTCTGTTGACC 827075 36 100.0 40 .................................... TTATTCGAACCACTTGGATAAAGTCAACGAACAATTGACC 827151 36 100.0 44 .................................... GCGGGGAGCAGTCAACAGGTTGGTGAGTTTCTCATGTATGTTGC G [827162] 827232 36 100.0 48 .................................... CGTAACAGAGGTGGTCTAAGCTCTAAAACCCTTGCTGTGTAGGAGTTC 827316 36 100.0 38 .................................... AGTTCCTCCAAAAGATGTTTCTCAGAGTGTGGCGACCC T [827330] 827391 36 100.0 38 .................................... AATAATCAGTATAAAACTGCCCATTCGTAATACAAACA 827465 36 100.0 42 .................................... CTAGTAATCCCCTGTTTGTTTTTGTAAGGGTAAGGCCGGTTG G,T [827476,827494] 827545 36 100.0 38 .................................... GAAGGACGCATTATTGATCTTACTGGCGCAACCAACCC 827619 36 97.2 43 ..A................................. CTTCGAAAGAAAAGACCTTTTCGGTTTCTATATCTGAATCTCC 827698 36 100.0 37 .................................... AAAGTATCTACAAACCCAGCGGCGACCGCCCCCGGGC A,T [827706,827727] 827773 36 100.0 40 .................................... AAAGCTTGGGCCAGCTCTAAAGCACTGGCATCAACTTCCC G [827803] 827850 36 94.4 36 ...AC............................... TGTTCAGGGTGTTCAATGGTAGTTGTTTTAGTTAGC 827922 36 100.0 39 .................................... GTTAAGTAAAAATTTTATTGAAAGAGTTCTTACCTTAAC G [827933] 827998 36 100.0 37 .................................... CAAATACATCCAGTCATAGAGGCGATTGTAAGGCAGC 828071 35 97.2 38 ...........-........................ TGGCTGCATCGTCGCCTGGTGAAGCTAACGGAGCAAAC 828144 36 100.0 42 .................................... GGGGTGGTGACTAGCTCGTAGCAAGCAGTCAGCTCCCCGCCC A [828167] 828223 36 100.0 43 .................................... GGACTTAGGTACAGGGTTGTTTAGATGGACCTATTGGATCGCC 828302 36 100.0 36 .................................... TTTTCCAAGATTTGGCAAATCAGCGGCGTGTCGTTG 828374 36 100.0 39 .................................... AGATGTCACAACAAACCCTGAGGCCGCAGCATACAAGAC 828449 36 100.0 39 .................................... ACTTGTCGGATCAGTAATTTACTGAGATCTCATCGCAGC 828524 36 100.0 47 .................................... TGGGCCGGCGACTTGGTAGAGGTAACGGGGGTCCCTCTTCCTGTTTC 828607 36 100.0 41 .................................... CCACTGAAAAAGTTAGAGCTGTTATTGTTATAAACGATGGC G [828618] 828685 36 100.0 42 .................................... TGTGGATTTAATGCTGCCGGGTCTCGTTATTGTTGTGAATAC T [828699] 828764 36 100.0 51 .................................... CCGTAATGGCAATTTTGTTATTATCTAGGTAATGAGAAAATTCTTTCATAG 828851 36 97.2 41 ...................................A CAACTCTTGGGGATCGAGGAGTACGGAAAATGCTTCATCCC 828928 36 100.0 42 .................................... TCGTTGCCGATATGCAATCGCAGCGGGCAGCTCTTCTCCGTC 829006 36 100.0 38 .................................... GGTGTAGCCAGGATTAGAAGGGTGGTCATTGGTCAAGC 829080 35 97.2 41 ..............-..................... TCACGTCAACCCATAAGATCGTGTCCACAGATCCATTCGCC 829156 36 100.0 43 .................................... CCAGACAGTTGTGCTTTTTGACGCTAACCGTGCCAGCCCTGGC A [829179] 829236 36 100.0 39 .................................... GACTTCCCCCAGCGGGACGCCACAGCCTCTTGAGCTGTG G [829263] 829312 36 94.4 41 ....CA.............................. CTATGCCTTCTTCAGTTATGGCGACGCCATGTTCCTGACCC 829389 36 100.0 37 .................................... TACTTCCTCTAGTTCAACATATCCCGATGTAACCAAC 829462 36 100.0 44 .................................... CCTCGCGCATCCACAGTAGGCTTTAGCAAATTTACCTCGATTGC 829542 35 97.2 46 .....................-.............. AACATAAAAATTTGTTTTAGTTCTTACACGCCTCAGTTTCATGCAC 829623 36 100.0 37 .................................... ACTGAAGCCTGTCGGGTGGCCCAGCGCATCCACATGC 829696 36 100.0 40 .................................... CGAGAGGCAGGACCAGCGATTGCAGCAGCAGGAAGAGGAA 829772 36 100.0 33 .................................... ACGTATGGCCGGCCAGCAGGTTCTATGTCTATA 829841 36 94.4 38 ...............................A...G ATCTCAAGTCGAGAGATCTTCAACAAATACCAAACTAG C [829874] 829916 36 100.0 38 .................................... CCACAGTCCCTAGGGGTTGAGGACGGAGCAGGTTTTCC 829990 36 100.0 40 .................................... ATGACTGACGCCCGGGACTCACCCGAATCCCGCAAACGAG 830066 36 100.0 40 .................................... CCGAACAATAACTGTCAGGTCACCAAAGTCAATGTTGTAG 830142 36 94.4 39 ..................................CT CAAGGCTATCGATTAAAATGCGCTCGATTTTACCCGCAG 830217 35 97.2 39 ..............-..................... AACTTTGAGTCCACCAGGATACCATAACAGGAGCACTAG 830291 36 97.2 43 G................................... CAGTTCTTTTTATAAAAAAGTTCTCACACCATAAGAGAAAGTT A [830314] 830371 36 100.0 34 .................................... GTGGTAGGAAAAGTCGCAGCAAATGGCGCGGCAC 830441 35 97.2 44 ..............................-..... GTCTCCGGGTTTGTAGGGTTTTTCCTTCCTGTTATCTATATCCC T [830455] 830521 36 94.4 38 ..................................CG TACAAGCAGCGGCTTCATTTGCAAGTTTACTGACTTCA 830595 35 97.2 45 .......................-............ GCATCATTCCATAGTCGATCTGGTCAACTGCCCATTAGGTTAGGC 830675 36 97.2 40 A................................... ATGAATTCCTGCTAAGTCAAGATTTGGTAGTTCCGACAGG 830751 35 94.4 42 ..................-........T........ CAAACGATCGAAGTTGCTGATATTTCAGCGTTGAAAGCGCTC 830828 36 100.0 44 .................................... GGTCGTGATTGGTCGCTACGCGGCTGAGGGTGCTCTTTACCCTA C [830848] 830909 36 100.0 37 .................................... ATAGGCAAAGGAGAGATCAACCCAAAGAGGACGTCGA 830982 36 100.0 40 .................................... TCAGCCCGCGACGAGCGAGCGAGGAGCACTATGCGCAGTA G,A [830993,831006] 831060 36 100.0 40 .................................... CGGTTGATGCCGCCATGGAAGGCGGTACCATAGTTTCGTT 831136 36 94.4 41 ................T.A................. TCACCTGAATAGTACCCAGAGATTGTGCCTGATTCAGTCCC C [831143] 831214 36 100.0 39 .................................... ACCTGGCATCGACACCTGGCCTGTCACTACAACAACTGG 831289 36 100.0 41 .................................... TCTAAAAACTGACCCTTCCGTCATCGCCAGCGTTTCACCTC T [831303] 831367 36 100.0 38 .................................... TGAAAATCCAGAATCATGAGGACACTAAGCAACTTGTC 831441 36 94.4 43 ...AC............................... GACTGGCGTTTCCCAATGGGCCGAGCATTTTCATGCCGGTTCC 831520 36 100.0 40 .................................... GGGAAGTTCCTCAAAAGTACTATATGGATTTGACTCAAGC 831596 36 100.0 39 .................................... CAAAATCCCCGGTATTCTTCTTCTTGGATGTGAACTTCT 831671 36 100.0 40 .................................... GCCCTCTCCCGTTGGGGTTGGCGCATGATATATCTTGGCA 831747 36 100.0 41 .................................... ATGGGGGAGCTAGGCCAGGAGCCGGTCGAAAACCTAAATAT 831824 36 100.0 38 .................................... GTCAGTAACTGAAGCTTTGATTGAATCCCCCTTGTTAG 831898 36 100.0 43 .................................... GATTGTTAATTGGAGTAGAGAGTCCACTTTCTGCGGTTTGCAA 831977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 78 36 98.9 41 CCCCACCGATTGGGTTAATTCGGAATAGTTGGAAAC # Left flank : CAACCTTTCGTGAGGGCGGCCTAATGCTGGTGCTGATCACTTACGATATTCCCGATAATAAACGCCGCACCAAGTTGGCAACCTTTCTAGAAGGCTACGGACGACGGGTACAAAAAAGTGTGTTTGAATGTTTTCTAACCCAAGCAGAAATGCAGGAGTTACATCGACGCATTCAACGCCGTGTTAATCCTGATGAAGATAATGTGCGCTTTTATTGGCTTACCCCTCAGTCCGTTGCCAAGAGTCTGGCCATTGGCAGCGACCCGCCTACCCCACCTCCCAATGTTTACATCATTTAAATGCCTCCCATCGACGCACCCCTACCAATGGCTGTAGCTCCCATTCTCTCGTGGAGGTGCGTCGATGCCTTGCACCATCAGGGGTTTGAGCATTGGTTGGAGGCTGAAATGCTCGATTTTGAGCATGATGGAGTATCCTGTTTAGCAGGTGCGTCGATTCAACGGCTGAAACCCGCTCCGGGCAAGGCCCCCCAGACGAAC # Right flank : CCGAAGAAAAGAACGAGGGCGGAGGGCGGAAGAACGAGGAGATTAGAGTGAAGGTGCTCACAAATGATGAGCCTCTCACCATTGGACTCTTCCGTCCTCTCTCTTCCCTCTTCCGTCCTTCGGACCATGGGCGGAAGAACGAGGAGATTAGAAGAAAGATGCTCACAAATGATGAGCCTCTCACCATCGGACTCTTCCGTCCTCTCTCTTCCCTCTTTCGTCCTTCGAAGTTTGAGAGAGTAGGTAGGGTGGGCAAAATCAGGATATAGCAAGCCTAACTGAATTTAGAATGAGAATCGCTTACAAAGCCTATAGTCTATGGAATGCTGTTCGAAATTCAACTGTGATTGCTATAGATAACCCTCGCTGGTGCCTGTAAGCTTTGTTTGCCCACCAATTTTTTCAGCGGTGGGCATTGTAGTTTGAGTGTGGGTTAGCCAAGATTTCGGACAAGATAATGCCCACCCTACGAGCTCACTTTTTAACCAAATTCCTCCCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1777108-1777287 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1777108 37 100.0 34 ..................................... CCACTATGATGTGCCGCTTACTCAGAAGGCCTGG 1777179 37 100.0 35 ..................................... TCTTTTTCACCAATTTTCGAAGAGGCGAGGAGCAA 1777251 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GCTTCAATGGGGCCGCTCATTTAGAGAGCGGTGCGAC # Left flank : AGCAAACCGTGAGACTTTGTAGTTGAGCTGGTCGCGCCTGACTTCATCGCGAAAGGCATCGTAGATGAAGTCAGCAACATCATCATGGGCGCGGGTTGCCATTAATTGAACTCGCTCACCGTTCACCAATTCGTACCGGTTACCATCTTCTGGCAGCGTCTCCAGAAATTTCAGGAAGCTAAGTGGTGGGGCGATCGCTGGAGTCATGATGACGAATGGCCTCAGCTATGTCTTGGTAACAGCGGGGTGTGCCCTTAGTTTAACGATAAGGGTGGAGTGGTTGTGTGTTGGGTATGACTCACAGGATTGCCCTGAGGGTGCTTAGCACAACAGCAGGCAATGTCCGCCCTACTCCTGTCTCCTCCCTTTTCTCTTTGCTCCGCACGTGCATAGCCAGACATCCCATGGGGGAGCATGGGTCATTTCCCGGGCGATAACCGTTATCCCCTGGCTCCGCGAGGACCCATGCTCCGGGTAATACTGGGACCTACCCAATTCTC # Right flank : CGCAAAGAACAAATAGATCAGATGCCGGTTATTGGCTTCAATGGGGCCACGCAGAGCATGGGGTGAGTTCCGCTTTGCAAGATCTTCCTGCATCTCAGAATATATCACCTGCAAGATCGGCCTTCTCCCTTCTCGCAAGTGTCCTCTGCCGAGCGCCAAGCGCCCTCGTCGGAGGCCAGTGACCAGGCCTATGATGGCCTGCTGGACAAAGAGAAACAGCTCAATGCCCTCTCAGAGCGCATGCTCCTGGCCGTCGCGGTGCAATACGGCAAAGACAGCTACGAATATGAAATGGCCGGCGGCACCCGCACCAGCGAGCGCAAACGTTTAGGGTAACGACATTGGCATGAGTCGGCTAGAGAGCCCCCCAGACCCCACCGGCCTGGGGGTTTTGCTATGGATAGCATTACCCAGAATCCAGGCAGAAGACTACGCCACGATTCAAACCCTCCCACTGCATTGAGCTCTAAGACCGCTCTGGACATGGGCGACGAGTTCGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCTCATTTAGAGAGCGGTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 2245320-2247274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 2245320 35 100.0 35 ................................... GTTGAGGGCGCATCAGTCAAAACTGATCGAGGTCG 2245390 35 100.0 37 ................................... CGAAGCCGCTAAACAGGGTACTGCAACGGGTATCCAG 2245462 35 100.0 34 ................................... AGTTTTGGTCACGGTCCAGGGTACTGGCCCAGCC 2245531 35 100.0 35 ................................... TCCATCCAGTTCCCCTTCTCTGGCAATGCCAGCCT 2245601 35 100.0 38 ................................... GGGATGGTCGTCAGGGTGATGATAGCACCAATCCAGAT 2245674 35 100.0 36 ................................... GGGGGCAGTGTCCCGGGACGTTCTACGACATAAGGG 2245745 35 100.0 34 ................................... ATATAGCGCAATTCGATCGGGCGCTTCTTCGAGG 2245814 35 100.0 36 ................................... TCTTTCAACTCCGATCGGATTTCGGGCTTCAACCTA 2245885 35 100.0 37 ................................... TCCGTGCCAGCAAAAGAAATTGTCACATTTCTGTCCG 2245957 35 100.0 38 ................................... TTTATCTCCTTGTCTAGGTTCTGTTGAGCCCCCTGAGA 2246030 35 100.0 37 ................................... TTTTCCCCCACCGCCTCCGCCTCCACCCCCTCCACCT 2246102 35 100.0 36 ................................... ATGTCCCGATTAACTCAGTGGCTACGTCGCCACCTG 2246173 35 100.0 35 ................................... CGTGTGTTTTCCGTGGTTGATGGCGTAGGGCAGCC 2246243 35 100.0 36 ................................... CCCTGCGTTCTCAAGCTATCCTGTTCTTTTTTGCGG 2246314 35 100.0 40 ................................... CCATCGTAGGCATCCCGAGAAATGTCCTTAGACGACTCCA 2246389 35 100.0 34 ................................... ATATAGCGCAATTCGATCGGGCGCTTCTTCGAGG 2246458 35 100.0 36 ................................... TCTTTCAACTCCGATCGGATTTCGGGCTTCAACCTA 2246529 35 100.0 37 ................................... TCCGTGCCAGCAAAAGAAATTGTCACATTTCTGTCCG 2246601 35 100.0 38 ................................... TTTATCTCCTTGTCTAGGTTCTGTTGAGCCCCCTGAGA 2246674 35 100.0 37 ................................... GAAATTACTGTGAAAGACACAGAGGGAAAGTCCTATA 2246746 35 100.0 36 ................................... GACAATCGGCCTCTGCACGTTCAGTGGCGGTGGCAC 2246817 35 100.0 35 ................................... ATGCTTTTCTCGTGGACCGTAAACGCTAGGCCCAA 2246887 35 100.0 36 ................................... AATCAGTAATGCCCAATTGTTCACTACCTCTTGGGT 2246958 35 100.0 36 ................................... GCACGGATGGTACTGCGATCGCCCGAAACACTGGGC 2247029 35 100.0 35 ................................... TGAGAACTTCATCGTACCAATGTTTCTTAGTCATC 2247099 35 100.0 36 ................................... TAGTCCTCATCCACGTACCACTCAGGGGCGCACGTA 2247170 35 100.0 35 ................................... CTCCCGGGCGAGAACAGCGCGTCTACTGTTTTCTG 2247240 35 97.1 0 ..........................T........ | ========== ====== ====== ====== =================================== ======================================== ================== 28 35 99.9 36 CCGCCAAACCTCTGATGCCGCAAGGCGTTGAGCAC # Left flank : CGCGATCCCAAGCGTTGGCGTAGGGCTTACAAGCTGCTGAAAGGCTATGGTGAAACGATTCAGTATTCCATCTTTCGAGTGCGGTTGAATCAGCGTGAGCGGGAACAACTGCGATGGAAGTTGGAGAAGATTCTCACGGAGGAGGATAGCTTGCTGATTGCGGGGCTCTGTCAACGTTGCGTTGAGCGTATTGAAGCCTGTAATCGTCCAGAGTCCTGGGAGGTCGAGCACGACATGCACCAGATTCTCTGATGCAAGGATCTCTGATTGTCGAGAAGTATCCGGCTGCTCGTGTCCTCAGAGCCCTGTTCAGGTCGGTCATTATGGCCGGTTGATTGATGTTTGAGGTGCTTGCAGGAGGCAAAAGCCTTATGAAATGGACTTTCTGAACGATACGCAGTCGGATAAAATAGACAGTAAGGTTTAGCGATCTAAAGATCATGGTCTACCTTGCAAAACCAGTTGGGAGCGCTTGTGTAGTCAGGGTTTTCGAGGTCGCA # Right flank : CGAAGAACAATTCAAAATTCAAAACTCAAAACTCATCGCCAAACCTCTGTTCGCGAAGCGTTGCCGCAGGCAATAGCCGCAAGGGCTTGATCACACTTCGATTGCATCAGTAAACTTCAAAAGTCCTGGAGAATGCCATGAAAATCATTTATGACCCAGAAGTTGACGTACTGAGAATCTTGTTTCGAGAAACCCCCATCAGCGAAAGCGATGCAGATGAGTCCGGCATTATTTTCGACTTGGATGCCCAAGGCAACGTAGTGGGTTTAGAAATTCTGGATGCCTCTCAACGCATCGACGATCCTACATCCGTTAGTTACAGGGTTGCCAAGCTTACTGAGGCTGAGGTCGCTTCAGCAGAAGACACCCTGCAAAATCTGCTGATGGATCCAGATGCGGGTAAACCCGTCAAAGAAGCGATTCAGCAACAGCTACTGCAGATGCGTGGGCGCCGTGAAAAACGCACACTATCCCTAGAAAACGCTATGGAAGCGCTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCAAACCTCTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 2291595-2291345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2291594 36 100.0 37 .................................... GCCACCGAGAAAGCGGCCGAGGAGGCAGGGTACGACC 2291521 36 100.0 35 .................................... CAGTTCTTCCGCTTCGGTTCCACGGATCGCCGCGA 2291450 36 97.2 34 ...................................A AGAGAGAGTTTCACATTAGAGGATACTTTATCCT 2291380 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 36 GTTTCCATTCAATTAGTTTCCCACTGAGTGGGAAGG # Left flank : TCGACACAACTCAGGACAAGCCGCTCAGCCAGCGGTATAGCTTTCGCTGATACGACGTTCGCTTCGACTCCGCTCAGCGAACGCTGCTCTATTCATTGGTTTCCCACCTGACAGAAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGCTTGTCCTGTATGACTTTCAGTCAGGCTCCGCCAAGCGCGTAGCGGCCCCGCAGGGGCAACGAAGTCGAACTGCTCGTAGTGTTCGCGTAGCGGCCCCGCAGGGGCAACGAAGCCGAACTGCTTGTCCTGTTCGCGAAGCGGCTCCGCAGGAGCAACGAAGTCGAACTGTTGGCATAGCCTGCCCGGAGGGCATAGGGAAGGCAGCGGATAATCGAGGACTTTAGGACTGTGGCAAGGCTTGGAAATTATGGCCTATACGACAGGCAGACATGTCCCTTTCATCCTTCATCCCTCATCCTTCTGCCTTGGTTGCC # Right flank : GGTCGGCCTCTGGAAGACCTACCACGTCTACATCCTACACCATCATTTCTGGGGGGTCTACTGATCGCCTCTGCAGATGACAAATTTTCTCAAAAGCACCCTGTGGAAAACGTCTGTATCCCTTGCCTGGAAGGCAATCTGGTGGGGTCGACGATAGAATAGGGGTTTCAGCGATCGGTAGACTCCAACAGGACTGGCAGTATTGTTGAGTTAACATGGCCGAATTCCTAGATTTCAATCGCAGAGCCTGGCTGGTGCAGAAAATTACCGGATTCAGCTATCTTTCCCCTGCCACTCCCTGACCGATGGCCGAGTCAATCTTACCGTTGTCGCGACGTGAGTTACTTTGATCGCGATGCAACTTACGTTGATCGCGACAAACCTTACTTTGACTGCGACGTGACATACTTTGGTCGCGATGCGACTTACTCTGAGCCTGATGCGACTTACGTTGATCGGGCCGTGACATACTTTGGTCGGGCCGCGACATACTTTCATCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCACTGAGTGGGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.60,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 2294711-2296526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 2294711 36 100.0 39 .................................... TATCGAGTGAGTCACCGTCTCGTCATTTGGGTCGATTAT 2294786 36 100.0 42 .................................... TACATCCGAACTTAAGCCCAGGGGGTACACCGCCGCCAGAGG 2294864 36 100.0 42 .................................... TGAATTACTGTCGCTCATTATTGGGAGAGCGGTAGTCGGACT 2294942 36 100.0 40 .................................... GACTCGAGATTCAAGCCGCCGGCCCGGACGAAGGTGTCCA 2295018 36 100.0 39 .................................... CTTGTGTAACGTCACAATCAAACCAACAATTATTTACAG 2295093 36 100.0 47 .................................... ATGGTTCTTCTGCGGCGAATCAATCAGTAGATGAATCCCTTATAGAC 2295176 36 100.0 39 .................................... GCATAATCCCTTAGCACGACCTTGGCGGCTCCCCGTTGA 2295251 36 100.0 36 .................................... TGAATTGTCAGTGCCATCATTATCACTATCAACGAC 2295323 35 97.2 36 ..-................................. CCCCCGGATGGCGTCTCGTGAGGCCGAAATTAACAA 2295394 36 100.0 44 .................................... CTAATACTTCCAAAACGTTTAAGGAAATTTCTGGACGATCCCAT 2295474 35 97.2 35 .................-.................. TCAAATGAGGCTGAGGGATTATGGGAGAGTTTAAG 2295544 36 100.0 35 .................................... ATATAAATCATCTTGAATTTTTACGTATGGTCGCA 2295615 36 100.0 35 .................................... CACTCATCAATAATTTCAATGAGTATGATTTTAGG 2295686 36 100.0 36 .................................... TTAGTGATTTCAAAGGAAGCTCCATTAGCAAAAGTC 2295758 36 100.0 34 .................................... TCCGTATTTCTGAAATATTCAGTATTCAGCCAAC 2295828 36 100.0 39 .................................... GCAAAAGATTTAATAAAACTATTGAGGCGGCTATGACTT 2295903 36 100.0 41 .................................... TAATTCCATTGATTTATTCCCCTCTAGTCTTTGGCTGACAA 2295980 36 100.0 38 .................................... GTTCTTCAAGTGATCTTCATCTATCTTCAGAACAGAAG 2296054 36 100.0 36 .................................... TCTCCGATGAAGTTCCAACACCTGTTGTTAGAACAC 2296126 36 100.0 38 .................................... GTAAAATGGCTCCTGCTCGATTAGCCACTGACAGCCAA 2296200 36 100.0 38 .................................... CCGTAGGAGTAGTAACGATAATCTCCTTGATCCCCTTG 2296274 36 100.0 39 .................................... GGGTGAACGACCGTCCATCGGACGGGACCACAGTCTCCG 2296349 36 100.0 35 .................................... ATTTTACTAAAGCAAAAAGCTCTCCGGAGATAGCC 2296420 35 97.2 36 ..-................................. TTCATATTCCCCAGTGGACAAGGATAGAGTTCGCCA 2296491 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 25 36 99.7 38 GTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Left flank : CAGACCCTATTCAAACCCTATCTAATTCGCTAAGCCCATGCTCTTATATATTGTTGCCTACGACATTCCCTCGAATCGCCGCCGCAAAAAAATATCAGATCTGCTAGAAGGCTACGGCCGGCGAGTGCAATATAGTGTGTTTGAGTTAATGCTGTCGCCAGCCAAATATGCGGAGTTGCGGCGGCGGTTACGTCGCTATGTGCAGATGGAGGAAGACAGTGTGCGGTTTTATCCGGTGTCGAAACACACGCTGGATCAGGTAGAGATTTGGGGCGGTGTGCCCCTGACACAGCCACCTGGGTCGATTATTGTGTGACAGTTGCGAGGGATAACGCCAATGGCTGAAACCCCCATAGTCTCGTTCTATCCCTCGATCTCTGACGTGGTCGGGGTTTCAAGCGTTTTTCAGTCGGGTTTTCAGCAAAATTCTGGACGCAGCTGGCTATCCCTCGCAAACCAGCTCTGGACAGCCCCCAGAGAGTGGGTTTAGAATGCAAGGG # Right flank : CGGCAACCAAGGCAGAAGGATGAGGGATGAAGGATGAAAGGGACATGTCTGACTGTCGTATAGGCCATAATTTCCAAGCCTTTCCACAGTCCTAAAGTCCTCGATTATCCGCTGCCTTCCCTATGCCCTCCGGGCAGGCTATGCCAACAGTTCGACTTCGTTGCTCCTGCGGGGCCGCTACGCGAACAGGACAAGCTGCCTTCTGCCTTCTGCCTTCTGCCTTCTGCCTTCTGCCTTCTGCCTTTCCTTATCTCGCTGGGGAGACTAATTGAATCGAGATTGCTGGTATCAAGGTTCTAAAGGCGGGCTGGGAGGCTACTCCTGCAAGCATTCAAGCCTTGGTGCTGGCGTTGAGTGAGCGCTTGACCCAGTTCGAGGAAAAGCTGACTCAGAACTGGCAAGATTCGTAAATGTCAAGACTGGTTGAGATATCGTTGCAAACCTCGATCCTTTTTGGCTAGCCTACTTAACCGCCTGATTCAAACATCCTCTTATACTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 2822496-2823558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2822496 37 100.0 36 ..................................... TTGTCCTCAGTCCGGTATTTGGCGGTTTCTGCGGCG 2822569 37 100.0 36 ..................................... GCTTACTCAGAAAGGGAGGTCAAGAAGGTCCTCTTT 2822642 37 100.0 35 ..................................... AGGAAAATGCAACGATATTTTGTGATTGAGCCCTT 2822714 37 100.0 37 ..................................... GCGGCTAAGATGCGGCAATAGCACGACACTATGCCTA 2822788 37 100.0 36 ..................................... CGATCAGTCAAGGTGGTGTGGGACAACCTGCTGCCT 2822861 37 100.0 38 ..................................... GCCAAGTGGCGGGGGAGTGGGGCATGGGCCAGTGAGTA 2822936 37 100.0 38 ..................................... CTAGCAGTGAGATATATGGTGAACGCTCCCCCCAGGCT G [2822965] 2823012 37 100.0 34 ..................................... ACAGCAAAGATGCCAGTAATGCCGTGCAGTACAG 2823083 37 100.0 36 ..................................... CGCCCCATGTAGGTACGCCCCACGCAGGTTAGCCCT 2823156 37 100.0 35 ..................................... CGACCCTGTGGGCCGACTGTGGTTGGCCTGTAGAG 2823228 37 100.0 36 ..................................... AGATCCCTTATCCCGATGCGTCCACTCCGAACACAG 2823301 37 100.0 37 ..................................... CTATCCAAGCGGACGATCGATTTGCCGTTGGTGTCAG 2823375 37 100.0 35 ..................................... ATGCCAGAGCCTACCACCAGCAGCACCCCTGCCAA 2823447 37 100.0 36 ..................................... GCTAAATAACTGGCGCAAGCATTGACTTGGGATACT 2823520 37 91.9 0 ...........................T..TC..... | G,T [2823546,2823555] ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 99.5 36 CTCGCCAACTTCTAAATCTCGGCAACGAGACTGAAAC # Left flank : CATCAAGCTCCTGTACCTCATCATCTATGACCTGCCCGATGACAAGGCGGCGAACAAGCGGCGCAATCGCTTGCATAAGATGCTCTCTGGGTACGGGGAATGGACCCAGTACAGTGTATTTGAGTGCTTCTTGACAGCCACTCAGTTCGCCCGGCTGCAAATACAGATCGAGCGCCTGATTAAGCCGGAGACAGACTCGGTGAGAATCTATATTTTGGATACCGGAGCAATTAAACGAACCCTGGTTTATGGCTCTAAAAGGCCCAGACAACCCGAAGCTATCATCCTATGATGGGAAGGTAGCAGATTTCTGGCAAACCTAAGCATCCCCAATTTGCCTAGGGGGTTCGCCAAAACCTTAGAACCTTGAAAATTCAATACTTTTGTCCAGGATAGCTCTGCCTTGGCAGATATCTAGGCAGAGGATATGCTGTCTTAAATGTCGGGTTTGCCAAGATAGGCGGCATATCCCTGTGTCTGGCAAGCTTTTAAGAAGCGCA # Right flank : CTCAGGGCAGCACATCGACGAGTCCCATCAGCAACAGGTCGAAACCGATCAACGATTCCACCAGCCCCATCCAGCCCCGTAGCCGCAGACACTAGCCCACCAGCCAGGGCTAGGTCGCCACTTCTCGGGCCAATGTATCCAACAGCGCCTGCATTTGTGTGACCACAATGTCATGGCAGGCCATGACATAGGTCCGATCCCGCAAGGTATCGCGACCATAGTGAGGAAAGCGAATCGGTTGCCCCACCCGGGTATGAATCTGGACCGGCAGGGGAATATTAGGCAATGCTCCCAGGGACACCCCCCATGGTAGGCCCAGATAGATAGGAAACACCTCCGGATCGGTGTTAAACAGCCAGGGCATGCCCAGCCGATGCAGATATTTGGCTTGGTCGTAACAGTCTTCCAGCACGATCAAGCTATCATGGGCCCCCCAGGAGACCAGGGGCACAATAGTGGCCCCCTGGCGCAAGGCCAGTTTAATGAAGCCAGTGCGACCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCAACTTCTAAATCTCGGCAACGAGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 9 2828011-2828403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2828011 35 100.0 35 ................................... CAAAAGCCCACTCCACGTGTAGGATCTACCCACCC 2828081 35 100.0 38 ................................... CTGCCAGCTTGTGCTGGTATGTGTGGTGAAGTAGAAGT 2828154 35 100.0 37 ................................... ACCTCAACGGGTACTAAAGCCCCGTCAACAACGGCTG 2828226 35 100.0 37 ................................... TGTACACGTTGAGACGACGCCTCGGTAGGTGGCGAAT 2828298 35 100.0 36 ................................... CCTCGCTCTACCCTGGAGTTGTAATTTCTCCAAAAA 2828369 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 6 35 100.0 37 CTTCCCACTCAGTGGGAAACTAATTGAATGGAAAC # Left flank : CGTAGAAGTCATGCAAATCGCGATCGCACCTACTCACGTCGCGGTCAAAGTAACTCACGGCGCGATCAGAGTTACTCGCATCACGATCGCACTTACTCACGTCGCAATCAAAGTTACTCACGCCGCGATCGCACCTACTCACGGCCCGATGCGAGCAACTTACGTCATGATCAAAGCAACTATTACCTGGCTATCAGTAACCCTGGAACGAGACCGACAGTGCCGAATCTAGCAATTTTCCGGATCAGACAGGATCTATCACTAAAATCCAGGTATTTGACTATGTTAACGACCATATGCTCCCAGTCCTGTGGGGGTCTGTCCATCGCCGAAACCCCCATTCTCTCGTCGACCCCACCAGATTGCTTTCCAGCTAAGGGATACAGACGTTTTCCACAGGGCCTTGTTGCGATATTTTCTCATGTAGATCGACGATCTCTTGACCCCCTCAGAAATGGTGGTCTAGAATATAGGCGTGGTAGGCCTTTCAGAGGCCGACC # Right flank : CGGCAACCAAGGCAGAAGGATGAAGGATGAAGGATGAAAGGGACATGTCTGACTGTCGTATAGGCCATAATTTTCAAGCCTTTCCACAGTTCTAAAGTCCTCGATTACTCGCTGCCTTCTGCCTTCTGCCTTCTGCCTTCTGCCTTCTGCCTTTATTTCTGCCTTCCCTATGCCCTCCGGGCAGGCTATGCCAACAGTTCGACTCCCTTCGGCTTCGTTGCCCCTGCAGTTCGACTTCGCTCACTACGAGCGGGGCCGCTACGCGCTTGGCGGAGCCTGACTGAAAGTCATACAGGACAAGCTGCCCTCTGCCTTCCCTTCGGCTTCGCTCAGGACAAGCTGCCCTCTGCCTTCTGCCTTCTGCCTTTATTTCTGCCTTTCTGTCAGGTGGGAAACTAATTGAGAGAGCGTTCGCTGAGCGGAGTCGAAGCGAATGTCACACCGCTGGCTGAGCGGTGTGTCCTGAGCTGTAATGAGAATTACCGGTTGTGATCCCTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCACTCAGTGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 10 3045220-3044329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021983.2 Halomicronema hongdechloris C2206 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 3045219 35 100.0 35 ................................... TCGCCTTGCTGCAATTCCTGGAGGACTCTTTAGGA 3045149 35 100.0 36 ................................... TCTGAAGTCATCATCACCCCCGGGTGGTGCGCGAAT 3045078 35 100.0 36 ................................... TCTGAAGTCATCATCACCCCCGGGTGGTGCGCGAAT 3045007 35 100.0 35 ................................... CACGCGTTATCTGACACCATCACCGGCCAAACAGA 3044937 35 100.0 36 ................................... TCGAGTCTCGAAGATGAGTCGTGAACAGGCTCAGGA 3044866 35 100.0 36 ................................... CGGTTCCATCAAGGCGCGATATAGAGCTTCTGATGG 3044795 35 100.0 39 ................................... ATCCAGTCAAGGCCTTCCTCCCATCAGGAGGAAACGGAA 3044721 35 100.0 34 ................................... ATCATCTGGGCGACCCGGAAAGAGTGGGAGGCCC 3044652 35 100.0 41 ................................... CCCGAGAAGCTGGGCAGGTGCCCAGCTGAATTGTGGAAGCG 3044576 35 100.0 35 ................................... TTGAGAAAAAGCTAATCCGCCCTCGTCCAAGACTT 3044506 35 100.0 38 ................................... GTCTACAAGCTTCTATACAAGAAGCGAGCGGACTGGAT 3044433 35 100.0 35 ................................... GATGAGTCGAGGGTGAGGTGTACGTATGCTTGCAT 3044363 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 13 35 100.0 36 GTTTCCATTCAATTAGTTTCCCACCTAGTGGGAAG # Left flank : AGAAGGCAGAAATAAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGGCAGAAGCAATGGGTAGGGTGGGCAAATTCATTGCCGCTGCTCTTAGCAACGGTCGAGACCCTTGGCTTGCCCACCAATCCTTGCGAACAGGGCAAACAGAAAGGCAGAGGGCAGCTTGTCCTGTATGACTTTCAGTCAGGCTCCGCCAAGCGCGTAGCAGCCCCGCAGGGGCAACGAAGCCGTTGGCATAGCCTGCCCGGAGGGCATAGGGAAGGCAGAAATAAAGGCAGAAGGCAGAAGGCAGCTTGTCCTGTTCGCGTAGCGGCCCCGCAGGGGCAACGAAGCCGTTGGCATAGCCTGCCCGGAGGGCATAGGGAAGGCAGAAGGCAGAAGGCAGCGAGTAATCGAGGACTTTAGAACTGTGGAAAGGCTTGAAAATTATGGCCTATACGACAGTCAGACATGTCCCTTTCATCCTTCATCCTTCATCCTTCTGCCTTGGTTGCC # Right flank : GGTCGGCCTCTGAAAGACCTACCACACCTGCATTCTACACCATCATTTCTGGGGGGGTCCACAGGCAGGCCAAATACATGACAATTTTTCTCAAAAGCACCCTGTGGAAAACGTCTGTATCCCTTAGCTGGAAAGCAATCTGGTGGGGTCGACGAGAGAATGGGGGTTTCGGCGATGGACAGACCCCCACAGGACTGGGAGCATATGGTCGTGAACATAGTCAAATACCTGGATTTTAGTGATAGATCCTGTCTGATCCGGAAAATTGCTAGATTCGGCACTGTCGGTCTCGTTCCAGGGTTACTGATAGCCAGGTAACAGTTGCTTTGATCATGACGTAAGTTGCTCGCATCGGGCCGTGAGTTACTTTGATCGCGGCGTGAGTTACTTTGATCGCGGCGTGAGTAGGTGCGATCGCGGCACGAGTTACTTTCATTGCGGCGTGAGTAACTCTGATCATGACGTGAGTAACTCTGATCGCGATGCGACATACTCTGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCACCTAGTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //