Array 1 469-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZW01000212.1 Geofilum rubicundum JCM 15548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 468 30 100.0 36 .............................. AAGATCTCCGGCCAGCGTCAGCAATTTTGCAGAGCT 402 30 100.0 34 .............................. GAATAAAAATAACCATCTGGGCGCTTACCTATTT 338 30 100.0 33 .............................. CACCTTAATCACAGGGGGGCTTTGCGGCCTCCC 275 30 100.0 35 .............................. ATGGCAATATCCGTATTTAATCCACTAAAATACTT 210 30 100.0 36 .............................. CACTTGGTTATCATCATACGTCGTTATCATTCTTGC 144 30 100.0 35 .............................. GGTTTTGTATGGAAGAAACAAATAATCACGCGCGA 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 35 CTTTTAACCGCACCAGAGTGGAATTGAAAT # Left flank : GAATTGAAATTCCATAGCCATCGCAAGAGCTGAAGATATATATG # Right flank : TTCTCTTGCATCAAGAGGAATCAGATATAACGGCACTTTTAACCGCACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACCGCACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 207764-208513 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZW01000003.1 Geofilum rubicundum JCM 15548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 207764 30 100.0 36 .............................. TCAACTGTGATTCCGATAACGGCGAACAGGTACCCG 207830 30 100.0 35 .............................. AGGTACCGGGCAATATCCGTAACAGAATGCTGGCG 207895 30 100.0 34 .............................. TAGCTTAACCGGTCGGTAAGCTGCATCCCTTTCA 207959 30 100.0 36 .............................. CAGTGAGTGAGAATCATTTGTGAAGAGACAGTGTCT 208025 30 100.0 36 .............................. TGAAAAGATTGTCACCGGCAATCATGAGGAGACTCT 208091 30 100.0 36 .............................. CGGTCACACCCTGAGGGGTATCGGTTCCGGCACCGA 208157 30 100.0 37 .............................. ACTCAATAAAATATTCCCTATCTGGGTATTTCTCCTT 208224 30 100.0 36 .............................. TAAAAAGGGCTAATGGCTTGATATAACGAAAAAAGC 208290 30 100.0 34 .............................. AACATTGCGAAAAGAATTATAGTTTTTGTACTTC 208354 30 100.0 34 .............................. TCCAAAAATCGTAACTGCTACCCCGGTGAGCCAT 208418 30 100.0 36 .............................. GATTGTAAGTCAAAGACATATCCTCGTTCACAACCA 208484 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 CTTTTAACCGCACCAGAGTGGAATTGAAAT # Left flank : GAGGAAAGCTTCATGTTAGTGTTGAATTTTAAAATGGCTTTCAGGCCGTAGTTCATTGGAAAATATAGGCATTGCCTTGTAAAAAAGTTTTGTTATTAATCAGTATTTTTTCATAATCAGGGCTGAACCTCCAGTTCTATTTCTCATATTAATCCAGTTCTCTGATTTTTTTGTTACCTCAAAACAATAGTTTCTTTAAATATCAGATAAAATACAGTTTTAAGTCGTTCGTGATGATGTCGGTAAGGCGTTGATTATGAATAAGATAAATAATTTAAGGTTGTCGTTCCACCTGCAAATATTATTATTTCATAACAAAGAATGCAATTCATAATAGAAGAAAGTTCTTTGACGTACTGAAAATCAATTATATAAATGTGGTTGTCGATCCTCGGTCTTTTTTGAACTTTCAGGCATCGACAACTTTTCGCTTGCAAAACACCATCCAAAAGCTATCTTTACACCAGTAATGTCGTTATTTTTTTGTGAAAAACTAACGG # Right flank : GGGCTAGCGAGGTTACAAATGCACTCGCACCTGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACCGCACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 5-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZW01000010.1 Geofilum rubicundum JCM 15548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5 29 96.6 36 ...............A............. GCATTAAAGACTTTGGATATAGAACCGATGTTCACC 70 29 96.6 35 ...............A............. GTCAATAGGGGCTGAAAGTAAGTTGGGGGAAAGCC 134 29 100.0 36 ............................. GGGAGAGGATCACCGCATGAGGGATCCCTATCACCC 199 29 100.0 39 ............................. ATCATGTACCAGCCACATGCGTGCTCGGTGGCGTTCCAT 267 29 100.0 35 ............................. TACACTATTTCTCTGATTGTATCATCTGACTTTTC 331 28 86.2 0 ....T...................CC..- | AT [354] Deletion [359] ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 36 TTTTAACCGCACCAGCGTGGAATTGAAAT # Left flank : CCACT # Right flank : ACTGGCAAAAAAAAGGTGCAAAAAAACGAATAGTGGCGTTCTGGTATTGATATGGTTAAATAATCACCAATTATCTTCCGGATCAGGCGTGTAAGATTTGTACCATTCATTTTTACCGCCTTGTGCATAGTCGTAGGATCGATCGAGCAAATCGGCCATCTCATTCTCCGAAAGAGGTTTGAAATGTCGGGCCGTTTCAATGTTTTCTTTTAACATTTTCAGCGAGTCCATGCCAGAACAAAGGGTTGAAATGGGCATGCTCATGGCAAAGCGCAGGCATTCCTCCACCGTGGCGGCCCCTTTATTCACCAATACTCCGTTGCCAGCCATTGATTTCATGCCGATTATCCCGATGTTTTTCTCTACCGCTAAAGGCAATACATTTTGGGTAAAACTCAAATAATGATGATCCATTGGATTAATGGGCATTTGAACAGTTTCCCAATCAAAGCCCCGGTTAATCATTTCCAAATGTATTTCCGGCCGATAGTGGCCTGTAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAACCGCACCAGCGTGGAATTGAAAT # Alternate repeat : TTTTAACCGCACCAGAGTGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 45-792 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZW01000190.1 Geofilum rubicundum JCM 15548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45 30 100.0 35 .............................. TTTTGTATCTATCCCAATCTCCTTATGGTAGTTGG 110 30 100.0 35 .............................. ACACTAAAACTCGAGAAAACTCCTGATGGGGTCTT 175 30 100.0 36 .............................. TCAATAGTTATCCCGATTACAGAGAACAGATACCCG 241 30 100.0 35 .............................. GAGATTTCCTAGCGTCGTGGGGTATTCGCCGGCGG 306 30 100.0 34 .............................. CGGATGGCGCGGCTTTCTGTTTTAGTGCGTACAA 370 30 100.0 36 .............................. TAACATCTTACACTTTCGTGGCGTATCATCGAACGG 436 30 100.0 35 .............................. TCAATTAATGCAGAATGCTACCACTACGGTGAGCA 501 30 100.0 36 .............................. CCAGTTGGCGGCATTTCCTTGTGAAAAACTGCAACA 567 30 100.0 33 .............................. GGTTATCCGCACCCCCGTCGGGGTCATAGCTTG 630 30 100.0 38 .............................. CAATTAATCAGGGTAGCGTTTTTACAGGGCAATTGCAC 698 30 100.0 35 .............................. TACTTATTAACAGCGTCCGCAAAAGGAGAATTTTT 763 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 100.0 36 CTTTTAACCGCACCAGAGTGGAATTGAAAT # Left flank : AATTGAAATTAATAAGCAAGCCTGACTATCTTTGCCCCCGCTATC # Right flank : AAAACAGCAGCTCAAAACAAGGCAATTCAGATATTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACCGCACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 990-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZW01000169.1 Geofilum rubicundum JCM 15548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 989 30 100.0 38 .............................. GACGCATGTATGCTTGTGATGTTTCCAAGCGGTATTTT 921 30 100.0 36 .............................. GGAGGGAACCAAGAGGGGCTCCATGCAGGTCCTTTA 855 30 100.0 35 .............................. GAACAAAGAACCGGGACGGTCAGTGGCAGCCATCT 790 30 100.0 35 .............................. GTCAATAAAATGGATGTGGATCTGTTTCATAAAGA 725 30 100.0 37 .............................. TACAATAAATGCCGGAAGATTAGCCACGGTAACATTG 658 30 100.0 35 .............................. GTTGATTGAAAACATTTATGGCATCAACAACATAT 593 30 100.0 35 .............................. GGTAGTTGCCACAGTGGTTCCGTCTCCGCCTTTTA 528 30 100.0 37 .............................. TGTTGCAGGGTTACCTGTCTCATCCTCGAATTTTTCT 461 30 100.0 35 .............................. GAGTATCCACTGCGATAGCGGACAAGGCCAAAGGA 396 30 100.0 34 .............................. CATCCATCACCTTAGATGCCACCTCCGGAAATCA 332 30 100.0 36 .............................. ACGTTGTCAGTCCATGCAAAGGATTGTGAAAACTGA 266 30 100.0 35 .............................. AATTATCAAAAGAATAATTAACCCCCGCCTTCCAA 201 30 100.0 36 .............................. GAGGGAACTGGAATGATTGCCCGCTAAAAAAGGTGA 135 30 100.0 34 .............................. GAAGGTGGTGATGATTCCAAGAAGGTAGGATTCA 71 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 CTTTTAACCGCACCAGAGTGGAATTGAAAT # Left flank : TGTAGTAATCAGCATATATAACACAATCGGAGATCTA # Right flank : TGTAAGTTGGTGAGTGATCTAAGGTGGCGGCTTGTCTTTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACCGCACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //