Array 1 3983953-3982225 **** Predicted by CRISPRDetect 2.4 *** >NC_016906.1 Gordonia polyisoprenivorans VH2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3983952 36 100.0 38 .................................... CGGTGGTTTTGGCGGCCATTATGGGAGAGATTGACGAA 3983878 36 100.0 35 .................................... GGGGACATCCTGCAAGCCACGGCGCGCATCAAATG 3983807 36 100.0 37 .................................... CGCAACACCGGATTGTCGGCTGACGAGGCAGCACAGA 3983734 36 100.0 39 .................................... TACGAACTGCGCAACCGGACGCAGCCGCCCGCCCTCCAG 3983659 36 100.0 37 .................................... GGGTTGGTGTTTCGTGTCCGCGTCACGCGGCGTCGGG 3983586 36 100.0 38 .................................... GAGGAAGACGAAGAGATCACAGTCGACGGCGAGTGATC 3983512 36 100.0 39 .................................... TCACGTGGCGGCATGGTCTGATCAACGATTGCAATGCGG 3983437 36 100.0 38 .................................... CTGTCGGTCCACCTTGACCCGCAGGGGGCCGTTCGCGG 3983363 36 100.0 38 .................................... GGTGGTCCGGGAACTGGTGCCGGTGACATTCGCGGTGA 3983289 36 100.0 37 .................................... AAGGGTGTGACCTTCCACGAGCAGCGGAACGTACGAC 3983216 36 100.0 38 .................................... GCCGACCTGAAGGCGAAGGCGCACGCCGAGGGTGTGAA 3983142 36 100.0 36 .................................... GATCCGTGTCCGGGGGTGCTTGCACCGCTTCATCGC 3983070 36 100.0 36 .................................... AGTGCCTGCCGGTAACCGGCCAGCGTGACCGGCCGA 3982998 36 100.0 39 .................................... ACCGAGTCTTTTGCGTGGCCGCCCTTGCGGCCGAACCAG 3982923 36 100.0 37 .................................... GAATGCATCGCAGCCTGTGCAGCGAGTAGTCGCGCGT 3982850 36 100.0 36 .................................... ATCACGGACATCTGGCACACGTCGACATTTGGCGAC 3982778 36 94.4 40 ................................AG.. CCGGAGTGGTCGTCGAAGTCGGACTGGCTGGCGATCACCG 3982702 36 94.4 38 ................................AG.. GAGACCGGTCGACGTGGAGCGACTTTCTCGGACGTCGA 3982628 36 94.4 35 ................................AG.. AAGGGATTCGGTGCCCGGCATCGAGCTGACCATGC 3982557 36 97.2 41 ...................................G CCGATCGGTGCGTCGGCACCGCTGGACGGGGCGCCGGTCGG 3982480 36 94.4 38 T...............T................... GTTCTGACGTCCGAGGCCAAGGAGCTCTCGACACCCCG 3982406 36 100.0 36 .................................... GAGCAGGTTCCGCATGTTGCGCAGGTCGATGGGCCG 3982334 35 83.3 37 ..........G.....T....A....T.....-..G TCCAAAGAACTGGGTGGACGCGTTACCGCTCACCCGC C [3982322] 3982261 36 86.1 0 ................G.C............TG..T | C [3982239] ========== ====== ====== ====== ==================================== ========================================= ================== 24 36 97.7 38 GTGCTCCCGGTCTTCACGGCCGGGTTCCATTGCAGC # Left flank : TCCCACGTACACACCGATGGTGACCAGGTGATTCGCGATGGCCAGACGACGTCACCTCATCGCATACGACATTTGCGAGCCGGCGAGACTGAGGCGGGTGTGCAAAGTCATGGAAGCGTACGGCACCAGATTGCAGTACTCGGTCTTTCTCTGCGACCTCTCCGAGCTAGAACGCACTCGTTGGAGGACAGATATCCACGGAGTCATGGACTACGGTGAAGATTCTGTGGTGGTCATCGACCTGGGTGCAGTGGGAAGCGCGGCGACCGTGACCCAGTTGGGTCGTCCGCGTACGCTGCCGGCGTCTGGACCGATGGTCGTGTGATCCTGGACGCGAGCGGTCAGTCCGCCACACAAACCCTGGGCAGCGCTCGCGCGCTGGTCAAAGCGCTCTTTGAGAACTTTAGATGCGAAGGTAAAGTGTTCCGAGCACTCCGTCTATCGCACCCCTCGCGGGAGGCCTCGTTTCTGCAGGTCAGGAATGGTGAATTTCGCGAGCG # Right flank : TCACGGAGCGATCTACAGCTACGATCAGCACGCTTTCGTCTTCGCCGCCGGGTGTCATCGGGAGGTAAGGCACCACCTGAGCGAAGTGGAGTGTAGTTAGGTGTGTTGGGTCTCTCCAGCGACCCGAAAGCCCTATCCCGTGATCACCGTCAGCAGAATCGCCGAATCCTGTTGTGCCGACAGGCTGTGCCGCGCGTCGGGCAGCATCACCAGATCGCCCCGACGGCCCTTCCAGACATCGTCGCCGGCGGTGATGGTCACCCGGCCGTGTAGCACCTGCACGCTGCCCTCCGCGGGGCTCTCGTGTTCGGCCAGTTCACGCCCGGCCACCAGGGCGATGACGGTGTGCCGAAGCCGATGTGAGGAATCGCCGTGCAGGGTCTGCGCCGCCCGGCCGCTGCGGCTGCGGTGGGCGGTCCCGATCAGTTGGTCGACGAGCGAGGTCAGGTGGCTGGTGTCCATGCCTTCACTCTTGCACCCGGGGGCCGGGTTCGGAACCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCGGTCTTCACGGCCGGGTTCCATTGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //