Array 1 11262-10565 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTSN01000155.1 Haemophilus parainfluenzae strain COPD-014-E1 O HAI-BAB-IMI-103414_31_len_22156_cov_20_ID_1416_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11261 35 91.7 30 A.G.....-........................... GCCTAAAATCAGATCCAAACTGTTTAAGGC A [11258] 11195 36 100.0 30 .................................... ATCCGATAATGCCAACTCAAAAGCGAAAGA 11129 36 100.0 30 .................................... TCAATTCTGTCGTTTCTATCCGTTAACATA 11063 36 100.0 30 .................................... ACATTGCGGAAGTGTTCGCGTTGGCGTTTG 10997 36 100.0 30 .................................... CAGCCAATCTCAAACGAGCAAGCGGCGCAC 10931 36 100.0 30 .................................... TCATCAAGATGGTGAAAATGATATAAAAAT 10865 36 100.0 31 .................................... TCATTTAACTCTTGTTCGCTTTTAGTATTAA 10798 36 100.0 30 .................................... TATAAAGAAATTGGTGCGCTTAAACGCATT 10732 36 100.0 30 .................................... TCCGTAATATGGACCGTTGAAATCAGATTG 10666 36 100.0 30 .................................... CACTGGCATGCGTTAGCTTACGTGCCGGCA 10600 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.2 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : TTTGATTTAATGCAGGAAACCTTGCGCATCACCAATCTCGGCAGCTTAAAAGCAGGGGATTTTGTGAATATAGAACGTGCAATGCAAATGGGCGCAGAAATTGGTGGGCATATTTTATCTGGCCACGTTTATTGTACCGCAAGCGTTTCACAGATTATCGAAAGCGAAAACAATCGTCAGGTTTGGTTTAAATTACCTACTAAAGACGTGATGAAATATATTCTTACGAAAGGATTTATCGCGATTGACGGCATCAGTCTTACTATTGGTGAAGTGAAAGACGATGAATTCTGCGTGAATTTAATTCCAGAAACCTTACACCGAACACTTATCGGTAAGCGTCAAATTGACGATTTAGTGAATATCGAAATTGATCCGCAAACACAAGCGATTGTGGATACAGTGGAGCGGTATTTAGCAGCTAAAGCTTAATTAGAATAAAAAAAAGTGCGGTAGAAAACAATATTGTTTTTTGCCGCACTTTTTATTCTTCCGAAGGA # Right flank : AGGGACAGCAAAAAGCCCCGTGCCACAAGGTTTAGGGGCTTTTGTTTTGCCTAAAAAACGGCTAAAAAAGCAGTAATTGATTTGAATTAACCTTTTTTTCTTGTGGTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATAGCTCCTTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCGTCTCGTCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGGAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAGCACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCGGGTAACTGCAATAATGCTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAAGCAATAGCTTTATCAATAGCAGTTAATACACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 26074-23377 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTSN01000075.1 Haemophilus parainfluenzae strain COPD-014-E1 O HAI-BAB-IMI-103414_20_len_27847_cov_22_ID_1096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 26073 32 100.0 37 ................................ ACAATGTAGCAAGTGCTGGAGCCGCATCAGGTAACAA 26004 32 100.0 35 ................................ GTCAATGGTCAAAACTTTACTTTTATCTACGTTGT 25937 32 100.0 34 ................................ GCGCAACTCGTCATTCGTTTCACGGTCAGCACCC 25871 32 100.0 34 ................................ TGGCAAGCTGCGATAACTGCCTGCACTAGCTGCC 25805 32 100.0 36 ................................ TTCGCTATCTACGGTATAGCTTGTGCCTGTTTCGGT 25737 32 100.0 34 ................................ TACCTTTAGTAGAATAAAGGAGTGTCTATGACAG 25671 32 100.0 36 ................................ TTTTTCGCAGCAATTTTGAAATCCACGCATAGAGCA 25603 32 100.0 36 ................................ CACGGCATTAAGCACAATATTAAATACGGCACCTAA 25535 32 100.0 34 ................................ AACCCAAAAGCAGATCGTCCTTTTGGTGATCGTG 25469 32 100.0 35 ................................ ACGGCTGAACGCACTGTAAAAACACAGCACGCCGA 25402 32 100.0 34 ................................ CTAGAGAAAACGCAATCGACCCATCATCTTTAAC 25336 32 100.0 34 ................................ ATAAACCCTCCTTTTTTACTAATCATACCTTAAG 25270 32 100.0 34 ................................ TTCTAATCGCTTAATTTCGTCCTTTTGAGCGGTG 25204 32 100.0 35 ................................ TATGTAAGAGGGAAAGACGATCAAGAGCTACGCAT 25137 32 100.0 34 ................................ AAGATAACTGTCAACTGAGAATGTCATATTTCCC 25071 32 100.0 34 ................................ CCTTACCGGAGCCCACCGGTGAAACAATGGGTGC 25005 32 100.0 35 ................................ CCTGCAGGTTTAAGCGGCATCATTCCGACAAATAC 24938 32 100.0 33 ................................ CGCTGATTCGTTCCATTTATTAATCTCCTAACG 24873 32 100.0 34 ................................ ATCTAAATAAAATTTAGATGAACAGAACTAATGA 24807 32 100.0 34 ................................ AACCAATTTTAAATTATGATCTGACAATTCAGAC 24741 32 100.0 35 ................................ TATTATGGATGAATTGAAAATTCATAAAGAACGTC 24674 32 100.0 35 ................................ TTTTAACCAATATTTTTAACCATACGAGGTGAAAC 24607 32 100.0 34 ................................ AGTGCGAAACTGCGCATTGTTAAATAATGTCCGA 24541 32 100.0 35 ................................ GTGAGAAAAACGATCTTGGCGTAATCAGTTGCAAA 24474 32 100.0 35 ................................ TTACTATATGTCCGCTCAATAGCATTTGTATTAGG 24407 32 100.0 35 ................................ GTCTTGATTTGCACCAAGTGCGATCCCAGCAACAG 24340 32 100.0 35 ................................ AACGCACGCGTAAAATCAATGGCGGGATCTAGGGC 24273 32 100.0 37 ................................ CTGAGCGATATACAAAGAGTATTTGATATTAGTTCAG 24204 32 100.0 35 ................................ ATTAAGTGAGATAACCGCCTCACCCGCGTTAGATT 24137 32 100.0 35 ................................ TAACTAAAATCTTTTGGAAACTGACCGCACTTTTT 24070 32 100.0 35 ................................ CATCCGTCAATCATTGCACCGATAGAAATAGCAAA 24003 32 100.0 34 ................................ AAGCTGATGATGTACTCAAGCCCCTGAATTGCCA 23937 32 100.0 34 ................................ ACTGCCTGATTTACGGATAGTTGGTCGGAGTAAC 23871 32 100.0 35 ................................ CCTAGGCGTTTACCACCACTAAATAAGCGGTCGTA 23804 32 100.0 34 ................................ AGCCGATTACTTAGCAAATAGATAACGGAGTAAA 23738 32 100.0 33 ................................ AATGCAATCAAATCTGCCGCAAGTGCAGTCGGT 23673 32 100.0 35 ................................ ACGCCAATTAAGGCTGTGTTTGGATAAGTAAACTC 23606 32 100.0 35 ................................ CTATCCACTTGCATTTATTGAGCGAGCAATTGAAA 23539 32 100.0 35 ................................ TATCGAAACTACATTCCACCATATAGCCACACTTT 23472 32 100.0 33 ................................ ATGGAAAAAGGAAAATTTTTCACATCTAAATAG 23407 31 71.9 0 ..T..-....C.A.....T.T..C....C..T | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 99.3 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCACGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGTGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGCTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGATGCGGCCGTTATACTTACCAAACTCCTTATCATAAAGTCAGTTAGCGAAATACAGTGTTTAATTAGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : AAAACTCAATAAATTTGAATAGTATAATATTTACCTTCCTACTCTATCTCTCAACCCAATTTATATCCAACAATATTCCCCCTTGTATTTCCCACACATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATGATTTATAATTATGCGTGTTTCTGACTTTCATTTCGACTTACCTGATGAGCTTATTGCTCGTTACCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGTGAAAATGGAGAAATTTCTCACCGCACTTTTACCGATATATTAGATTTAATCGACGAAGGGGATTTGTTGATTTTTAACAATACGCGCGTGATCCCTGCCCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGAACATCATTTCTTAGCGCATATTCGTTCGTCAAAAGCCCCGAAAGAAGGTGCAGAATTATTTTTAGGCGAAGATAAACTCGGTGAAAATAAGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //