Array 1 2603-3789 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSJI010000027.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
2603 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG
2664 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG
2725 29 100.0 32 ............................. TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT
2786 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT
2847 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC
2908 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC
2969 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA
3030 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG
3091 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT
3152 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT
3213 29 100.0 32 ............................. AATTTGCATCACATAGGGGCGAGGCTCAGTGA
3274 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA
3335 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT
3396 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA
3456 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA
3517 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG
3578 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC
3639 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT
3700 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
3761 29 96.6 0 ............T................ |
========== ====== ====== ====== ============================= ================================ ==================
20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AAATATTGTAGTTTACAGAGAGCGTCGCAAGTCATTGTTTGTACACAAGTAATTGAGCAAAGCGTGGATATTGACCTGGACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCAGGACGATTACAGCGGCATATCCGCGATATTAATGGTCAGTTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 43036-43430 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSJI010000029.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
43036 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
43097 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC
43158 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
43219 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC
43280 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG
43341 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
43402 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================ ==================
7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//