Array 1 181912-179262 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUAC01000008.1 Klebsiella pneumoniae strain GS888 NODE_8_length_252275_cov_99.371938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181911 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 181850 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 181789 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 181728 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 181666 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 181605 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 181544 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 181483 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 181422 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181361 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181300 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181239 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181178 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181117 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181056 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 180995 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 180934 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 180873 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 180812 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 180751 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 180690 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 180629 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 180568 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180507 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180446 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180385 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 180324 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180263 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180202 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180141 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180080 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180019 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179958 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 179897 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 179836 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 179775 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 179714 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 179653 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 179592 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 179531 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 179470 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 179409 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179348 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179290 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47090-48452 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUAC01000017.1 Klebsiella pneumoniae strain GS888 NODE_17_length_124695_cov_102.368542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47090 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 47151 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 47212 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 47273 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 47334 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 47395 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 47456 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [47510] 47510 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 47571 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 47632 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 47693 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 47754 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 47815 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 47876 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 47936 29 93.1 32 ............TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 47997 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 48058 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [48063] 48120 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [48125] 48182 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 48243 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 48303 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 48364 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 48425 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 95.7 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGTACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //