Array 1 974-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000432.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 973 30 100.0 34 .............................. GAGTCGCGCGCGGCGATCCTCGAGTGGGCGAGCA 909 30 100.0 35 .............................. TGGCCTGACCTTCTCCTGCTCTCCGTCATCGTCGA 844 30 100.0 32 .............................. ACGGAGACGAGCTTGCTGTCCGCTAACTGCGA 782 30 100.0 36 .............................. CATCTTCTCGCGCTCGGTGCGGACGTCGTAGTGCTC 716 30 100.0 38 .............................. TCGCACGTCGCGGGGTCCCGATCGTGCGGGCAGGGCTC 648 30 100.0 43 .............................. GGGTTTGAAGAGGAAGAGCGCGGCCCCGCCGGTGAAGAGAACG 575 30 100.0 36 .............................. CGCCCAGTCCGCCTGCACTGAGCGTGGCGCGGCCGC 509 30 100.0 34 .............................. ACTTCTGCGGCCACGTTCGGCGTATCAAACCCAT 445 30 100.0 34 .............................. TGCTCTTGCGCGTCTTGACGGTTTGGCGGACGCG 381 30 100.0 37 .............................. GAGGAGAACCTCGAGGACCTCATCGACCGCCAAACCG 314 30 100.0 35 .............................. ATCTTCGTCGCTATCGCAGCGATCGCGAAAAAGCG 249 30 100.0 35 .............................. TTGGAACGGGAACGGAACGGAGAGGCCCGCAGACG 184 30 100.0 36 .............................. AGTGCCGGGGGTTGCGTGGAGTAGTAGCTTACGCTG 118 30 100.0 37 .............................. GTGCGTGACGCCGACTAGCAGGTATGCTGTCAGCCGC 51 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 15 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCCGGCTTGTAGCTCCGGGAGGCGTCGGATACCACCGCATCCGTCGTCGACCCCCGGGGCACGGGTCGATCGCAGGTCGACGGAAACACTTTGTGTCACGCCCCGGTACGACGGGCTGTGTGCCCTGAACCGGGCAC # Right flank : CGCGTCCTCCGGGAGGTCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 475-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000536.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 474 31 100.0 33 ............................... ACTCGACGACGCCGAACTCGACGAGCTTGTCGA 410 31 100.0 34 ............................... GCAGTGAGCGCGCTCATGTTCGCCTTGCTGTGGG 345 31 100.0 34 ............................... TCATTCCTCTAACCACCCCTCGTGTAGTACCTCT 280 31 96.8 35 C.............................. GTTCTTCCCCGCCGCGACAGTTGGGGTGTTGCTCG 214 31 100.0 35 ............................... CAGTAAGCTATGTAGAGGCCATCTCAATAAGATAA 148 31 100.0 35 ............................... TGATTTCGCCGAATTACTTGAGTCGTCCGAAGGCT 82 31 96.8 0 C.............................. | ========== ====== ====== ====== =============================== =================================== ================== 7 31 99.1 34 GGCTTCAATCCGACTAGGGTTCGTCTGTAAC # Left flank : TAGGGTTCGTCTGTAACTCGTCATCGTCGCTCGCGCCGCGGAACGGATGG # Right flank : CCCCGGCCGCGAACGTCAGCGACCACCCCAGCCGCCGCTTCAATCCGACTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTCAATCCGACTAGGGTTCGTCTGTAAC # Alternate repeat : CGCTTCAATCCGACTAGGGTTCGTCTGTAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2768-2537 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000273.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2767 30 100.0 38 .............................. GCTCTTGGGGAGATACCCCCCATTGAGGTCCATTGCTC 2699 30 100.0 35 .............................. TTTATCCTCCCATTCAGCCGCGTGCGTATAGCAGT 2634 30 96.7 38 .............................G AACCGCGGGGAGAGGGTCGTCGACGAGACGGAGTGACC 2566 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCCTAGTCGGATTGAAGGGTCCGTCCCGCAGGGGACGGACGCGCGGTATGACC # Right flank : GATTGCGGTCATGGTCATGCCGGCCAGACGCACAGAGTTACCTCGATGGAACCTCATGTTTTAAGCCGACTATCACTGACCTCGCGGACCGTGACGATCTCGCCTTCGTGATGTCCCCATCGTATTCATCGGAATTGAATCCTGTTGAGGAGTGCTGGAGACAGCTTCAAGCCGATCTAAGCAATCGCTTCTTTGACTCACTCACTAAACTCACAACCGCAATCGATACCGCTCTCGACCAAATCTCCATTCCAAAAGTGAGCAATTACTTCTAATCTTCGCTATAGGATGAGCGGTGTCAGACAGGAAAGAAGGGGGAAGCGAAGTATGTAGGGGCTCAGCCGTCGAGGCGGAACGTTTCCGTATTCCGCGGCATGTACGTCCGGATGCCGAATTCTTGGTAGAGACCGGAAGAGAGCTGGTCTGCCGACGACTCGTCACCGTGTACGCAGAGCGCTTCTTCGGGACGGGGATTCATCGTCCCTACGAAGTTCTCGAGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1827-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000346.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 1826 30 100.0 35 .............................. GGCGGCACACTCGCCGTCACGGATGTCGAGTGGCA 1761 30 100.0 35 .............................. CAGAACCACACCCGTTTTTCGCGGGCTGACGTGGC 1696 30 100.0 54 .............................. ACTCCGCGGTGATCCACGGGGACCTGCGCTCTCTCGACGAGGAGAGCGGCGAAG 1612 30 100.0 35 .............................. AGCAGCCGCAGCCGGCCGGGAGAGTTGGCGAGATC 1547 30 100.0 34 .............................. CCGCGCTTCGGCGGCGCGGCGACGATCGTCGGCG 1483 30 100.0 36 .............................. ATGCGGACCCCCCCTCTCCTTCCGGCGTACGCTCGT 1417 30 100.0 35 .............................. GACGCGATCGCCGTCGTCGGGGTCGTCGCTTGGCG 1352 30 100.0 35 .............................. TCGAAGAAGAGGGGCCACGCGGCGTCGGATACATC 1287 30 100.0 40 .............................. ACTCGTCGCCTCCGGGGCGACGCCATCGTTCAGGTGCGCG 1217 30 100.0 37 .............................. ACCGGCGAGGAGCTGCGCGAGCGCGAGGAGAGCGACG 1150 30 100.0 37 .............................. GTCTGTTCGCGCTTCCGCGCGGCCGCGACCGCGTCCT 1083 30 100.0 35 .............................. GGAACGATGCCGGCGAGCGGAACCTCGACGGTGTC 1018 30 100.0 35 .............................. CGGCATGATGTCGGCTGGCTCGATCACCGACTCCA 953 30 100.0 35 .............................. GTGAGGTAGCCTGCGGGTCGAGGTCGACGAGCAGG 888 30 100.0 35 .............................. TCATTTGGCGCGGGCTTCGCGTAGGGCAACGTCTT 823 30 100.0 38 .............................. CTTATAGAACCGCGCCCGGAGTAGCGCCGTCGTCGCGC 755 30 100.0 38 .............................. TCAGTATTCGTCATGCTAACCACACTCCCACTATTATT 687 30 100.0 36 .............................. CAGCGCGACGTCCTCCACACGCTCAATCAGTGTGGG 621 30 100.0 34 .............................. CCCTCGGATCGGACCCCCCGGATGCGGGGTGCGC 557 30 100.0 36 .............................. AATTTTCTCGGGCTTATGCGCGATATTGGTAATCCG 491 30 100.0 37 .............................. GGCTAACCCCGCCGACGGCCCGAATCAGCATACGGCG 424 30 100.0 34 .............................. GGTATGAGTGGTCATGGGAGCATTTCGTGGCCGC 360 30 100.0 41 .............................. CCGGAGTGAGTGAGTGAGTCGTCGCCGTTGTGCGGCTCGAG 289 30 100.0 36 .............................. TTTCTTCAATTCACGGATCTTCAAAAACTTTTCGGG 223 30 100.0 36 .............................. GTGCGGTTGCGGATGATGAGCCGGTGGGTGTGCCGC 157 30 96.7 35 ....................A......... GTGACGTTCGTTGCGGTGCGGCAGTTCCGCTAACC 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 27 30 99.9 37 GTTACAGACGAACCCTAGTCGGATTGAAGG # Left flank : CCCTAGTCGGATTGAAGGGTTTTCCCAGCTCCGGGCTCGCCGATAATCACGAGA # Right flank : GGCGTCGAGTTCGTCGAGGTCGTCGGCGGTGACGGTCGCCTCGATGGTTACAGACGAACCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2879-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000267.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2878 30 100.0 35 .............................. AAAATATGTAATAACCTACTGCTTTAGTACCAATA 2813 30 100.0 37 .............................. CGTCCGCGCCGTCGACGCGCTCGACGAGCTCATCGAG 2746 30 100.0 36 .............................. GCCACGTGGGACACCGACGCTCCCGAGATCGTCGAG 2680 30 100.0 35 .............................. TTCGACGATGGACCTCGACCAGCTCCCGAGAGAGA 2615 30 100.0 35 .............................. GCCGAATTGGTGCCCGGATCGGTCTTGATCTCCAC 2550 30 100.0 35 .............................. ATCGCGAACCGCCTCTGGGAATCTGGCGAATACTA 2485 30 100.0 34 .............................. CGGACCGAACTCAACAAGCCAGCCTCCAAGCGCA 2421 30 100.0 34 .............................. GACTCCGTGGCGGGGAAGTCATGGCTGTGTGCTT 2357 30 100.0 35 .............................. GCGGAATATTGTCGAGGTCAAACAGATGTCCACTT 2292 30 100.0 35 .............................. TGCGTGGAAGATCGGTTGGTCGGTCTCGGTCTGTG 2227 30 100.0 35 .............................. GAGGTTATCACTCGTATTCGGACTATTATCATCCG 2162 30 100.0 36 .............................. CGCCAATACTGCAGTAGCTCCCGCCGTGCAGCATTA 2096 30 100.0 36 .............................. GTCGCTCAAGTCGAGTGATTCGACGGCGTGACCGTC 2030 30 100.0 35 .............................. CCGAATCAAGGGGCATCTCCCCACGGGATTGTTTC 1965 30 100.0 36 .............................. GGGGTTACGAGCGCTCGCTGTATGATTTTTGGGCGC 1899 30 100.0 36 .............................. ACGCGGCGGTCAGTGATCGCGGCGGCGGCGGGGATC 1833 30 100.0 36 .............................. GACCTGCGACGGTTCGCATATCCACAATCAACACTA 1767 30 100.0 34 .............................. TCTCTCTCCGACCAGACTGGAGAATATGCAAATG 1703 30 100.0 34 .............................. GGGTGCGACGTAGCCGGCTTGGGAGAGGACGCGG 1639 30 100.0 35 .............................. TTGCGCGAGCGTCAACGGGTCTGTCGCGTTTGCGA 1574 30 100.0 36 .............................. CGCGGCCGCGGATCTGGAGCGAGATGCCCCTCTCTC 1508 30 100.0 36 .............................. GCGACGCGCGAGATAGCTTCGAGCGCGGTGTCGAGA 1442 30 100.0 36 .............................. GTAGAGTATGAAGACCACTTGAATCAGTTTTGTAGT 1376 30 100.0 36 .............................. GAGGGGGGAGCGACGGCGATCGTCGTCGCTGTCCTC 1310 30 100.0 37 .............................. AGTGAGCGGGTTGCGAGTGTGGTCGATGTGTTTGCGT 1243 30 100.0 36 .............................. GGTACGTTACCCTAACTGCGCCGACTGGTGAAAGCG 1177 30 100.0 36 .............................. TAACACGACGCCGCGCCACCGTGCCATCCTCTCCCA 1111 30 100.0 36 .............................. TCGTTTTGTGTCAAAGTCAGGTAGAAGCTGTTTTGA 1045 30 100.0 37 .............................. CGGCTCGCGAACGAGCCGGAGCCCGAGGAGTACTGGT 978 30 100.0 36 .............................. TGGACTGTCATCTTCGAGAAGACCCTGATCCGCATG 912 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCTAGTCGGATTGAAGCGATGTCCGCAACGGTCTCACGACCGCCGCCGGCT # Right flank : TGCCAGTGGGACTCAACGAGCCGCCAGTACGCATCGTTACAGACGAACCTTAGTCGAGGCCGCGTCGGCACTGTGTCCGCGAAGTCGAGGAGAGTGTCGTCTTCGAACTCCGCTTCGAGCGCGCCGCTGATTGGTTCTCCGGACGCCGTTTCGCGTCGGTCAGACCGACGTCAGTTCCACGGCGCGAAGTCGGGATCGATGCAGCGCTCGCGTTCGTCGACGGCGTCGATGGCGGCGATTTCGTCGTCGCTCAGATCGAGGTTTCGGGCGCCGAAGTTGTCGGCGATGTGTTCGCGGCCGGTCGCGCGCGGGACGGCGGCGACGTTCTCCTTTGCGAGGAGCCACGCGAGCGAGATCTGATACGGGCTGGCGTCGTGGGTCTCGGCGGCCGCCTGTACGGGGTCGAGGTCCGCGACCCGTCCCTGCGCGAGCGGGGAGTAGGCGACGGCCCAGTAGTCGTGTTCGCGCGCGTCGGCGCGCAGCTCTTCTTGCGGGAGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3133-2639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000245.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3132 31 100.0 36 ............................... ACTCGTCGGCGACGTCGGCCCGGTCGTCGCCTTCGT 3065 31 100.0 35 ............................... TGTCACAGTAGCGTTGGGCTAGCATGCACGCGAAG 2999 31 96.8 35 ..............................T CCGTGTGGCCGCTCCCGGAGAGCGACCGACGTGGC 2933 31 100.0 36 ............................... CGCACTCGAAGGGGAACGTGAGTGCGCTTGAAGCGT 2866 31 100.0 35 ............................... GGGAGACGCGATGGGCGCAAAACCGCATCGAGACG 2800 31 100.0 35 ............................... GAAAGGACTGGATGGCTGAACCGAACTTCGTGATG 2734 31 96.8 34 ........................C...... GTGACGCTGTCCCCGTAGGCGATTTCGTAGTCGA 2669 31 93.5 0 ........................C.....G | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.4 35 GTTACAGACGAACCCTAGTCGGATTGAAGCC # Left flank : CCTAGTCGGATTGAAGCTGAACAGGATCAACTCCTCTCCTGACGCCGCGGAG # Right flank : CTCCCGGCGGTGCTCCCTGAGCTGGGACTCCCCGCTATCGCGTCGTTGAATCCGTCTGCGATGTCTCGTCCGCTATCCGTCGGCGTCGACGACGGTGAGCTTGACGTGGTGGACGCCTTCGAGCGGGCGGAGTCGCGAGAGGAGCGCCTCGATGCGCTCGCCGTCGCCGTCGACCGCGATGGATTCGAGACAGAGGTGGTGGCTGAGGTGGACGTGGTGGACGGCGATGATGGTGTCGGCGAAGTCGTGCTGGAGGTCGGTCATGGCTTCGGCGACGCCGCTGTGGTCGTGATCGTAGAGGACGACGACGGTGCCGCTGAGCGCGCCGTCGAGACCGGTCTGGCGATTGAACTCGGTGACGAACGCGCGCAGGGCGTCCCGCGTCGCTTCCGAGCGACTGGCGTAGTCGCCGGTCTCCACGACGTCGTCGAGCGCGTCGAGGAGGTCGGGCGGGACGGTGACGCTCATCCGATCGAGGTCGTCGCTCATACCCCGTCCTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 5475-1225 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000140.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5474 37 100.0 35 ..................................... GGGCAGATTCGCTCAGGATACTGAGTGAGAGACTA 5402 37 100.0 35 ..................................... ACGCCGGAGACAACGACGCCGTCGACCTCGACGAG 5330 37 100.0 32 ..................................... AACGCAGGCCTTACGGAAGGTGCGTGGGATAA 5261 37 100.0 36 ..................................... AACCCAGAACATCTCAAAGAGTGGGCGCAGAATAAC 5188 37 100.0 36 ..................................... CCACGCGAAGGATATCATCGACAAGATCGAAGCGGG 5115 37 100.0 31 ..................................... ATATCACGCGCCCCGATGCGTTCTGCGCCGA 5047 37 100.0 34 ..................................... AGCGCGCGTTCTACATCTTCGATCCGAGCGACTG 4976 37 100.0 35 ..................................... AGCATGTGCTTGATAGTATTATTGAGGCGGCCGAA 4904 37 100.0 36 ..................................... TGGTAGTCGTCGTTGCCGGTTTCGTCGGCGGCGCGG 4831 37 100.0 34 ..................................... GGGACGTCATTGAAGCAACCCCAAAGAGCGACAT 4760 37 100.0 35 ..................................... CGTCTGTTTTGCCGGACATCTGTCCGAGGAGACCA 4688 37 100.0 36 ..................................... GCACTGTCATTCCGGCTTCCTCCCGTCAACTGCCTC 4615 37 100.0 35 ..................................... CGCATGCGCCACCCACTTCCGCAGCAGATCTTGCT 4543 37 100.0 35 ..................................... GGGGAAGCAATTGATGGGGGTGACGCGGTCACAAT 4471 37 100.0 37 ..................................... ATATCCCAGTTCGTTATCTTCAGTATCCGTCCATGAT 4397 37 100.0 34 ..................................... ATCCGAGTACGGGGAAGTCGAGTATTCTGGGTGC 4326 37 100.0 36 ..................................... GGCTTCAAATCCGGCTGCGAAGACGACGACTGGTGG 4253 37 100.0 37 ..................................... TACTCGTCAATATCCTCCGGCGGGTCAATCTCGTCAA 4179 37 100.0 35 ..................................... CATCTTGAGGAAAATTTCCCGGAAGGTCCGGAAAG 4107 37 100.0 36 ..................................... CTAAACGCATCGATCGGATCCGAGTCCTTGAGCGGT 4034 37 100.0 36 ..................................... AATGAGGTTGCCGCGGTTGGGGATGATGTATCTGTG 3961 37 100.0 38 ..................................... AATACGACCCGAACAGCATGGTGCTCTTCGTTGGGCCG 3886 37 100.0 37 ..................................... CGGGAGTGGTTGGGGGTTGCGAATAGTCTATTGTCGG 3812 37 100.0 34 ..................................... AGATTGATATTCTCGCGTATGGGAATCCTGACCG 3741 37 100.0 33 ..................................... ACAATACTGTTGGGTCCGGGAAACACGACCGCG 3671 37 100.0 35 ..................................... CGTGTGAATGAGGAGAAGGTGCGTGAGGTGTTGGG 3599 37 100.0 37 ..................................... TGCCGCGACCCCGAGGACAATCTAATCGAACTCTGCC 3525 37 100.0 38 ..................................... ATATTATTGAGAGGGGTGGGGAGAACGGAATCCTTGAC 3450 37 100.0 33 ..................................... TGTATGAATCCCACTCGGATGGCAGCACGTCGT 3380 37 100.0 35 ..................................... ACTCGGACGCAGTCTCGGGCCGTAGTACATCGCTC 3308 37 100.0 37 ..................................... GGAGTTGTGGGTGTTGAGTACGTCGCCGAACGCGACG 3234 37 100.0 36 ..................................... ATGCCGTGGTCGGCGTCGCTCGTCTCTCGGACGAAG 3161 37 100.0 35 ..................................... ACCGGTAGGACTCCGCCACGTCGTCGTCGTCAGGT 3089 37 100.0 36 ..................................... CGACCGCCACCGCGTCGCAGGACAATACGGACCCGA 3016 37 100.0 37 ..................................... AGCCGGTGGTCTGGATCTATGTCAACGGCGTCGGGGC 2942 37 100.0 35 ..................................... TCCCCAGCATGCCCACTCTGCGGGGAGCGAACACA 2870 37 100.0 44 ..................................... CGGACGATTCGGTTCTCGCGCAACCACCTCAAGAGTCGGGGGAA 2789 37 100.0 34 ..................................... CGCTCATGGCCGTCTTGGGTGGGCGTGGTGAACA 2718 37 100.0 35 ..................................... TGAGCGTTTCGGACGCCTGCCCCTCCTTGTAGACT 2646 37 100.0 38 ..................................... GATATTCACCTATACTTGGGGGCGTATTATGCCACAAG 2571 37 100.0 38 ..................................... ACCAGATATAAGAGCTTTTCGAGTCGCGTTCCTATGTT 2496 37 100.0 34 ..................................... CGGGTGCTTTGCTGAAATCGGGTCAAAGCGCATT 2425 37 100.0 35 ..................................... ACGACGTTGGTGGAGGATTTGCGTGAGGTGGGTGG 2353 37 100.0 35 ..................................... TGAGGTGGGTGGATGTGTGGAGGTGGAGTCGGTGA 2281 37 100.0 35 ..................................... TCTACGTCGGCATTTCGAAGTACACCGGGAGCGAC 2209 37 100.0 35 ..................................... TCTACGTCGGCATTTCGAAGTACACCGGGAGCGAC 2137 37 100.0 35 ..................................... ATCCAGCCTCATCGACTGCCCGTGGTGTGCGGGCG 2065 37 100.0 34 ..................................... GGCGCGACGTCGAGACCGACGAGGAGATCGCGGA 1994 37 100.0 34 ..................................... TAATCCACTTGATAGGAGACGAGAGAAGCGCGAG 1923 37 100.0 33 ..................................... ACGCAGCCATCCGGGAAGACGTCGTCGCGCTCC 1853 37 100.0 36 ..................................... ACTTCCTCGAATTGCGCGGCAACAAACGCGGTCAAT 1780 37 100.0 45 ..................................... GGGATCCTTCGTAGAATTGGGTCGTGCCAGATGCAGACGTCGGAG 1698 37 100.0 37 ..................................... CTCCGGTCAGCGTGATCGCGTCTCCATCCTCACTCCG 1624 37 100.0 36 ..................................... ACCGACAGCGCACAGATCACACTCAACCCCGCGGAC 1551 37 100.0 34 ..................................... AAGGCGGCGCTCGTCGCGCCAACGCAGCTCGACG 1480 37 100.0 36 ..................................... GAGGGGATCAGGACGCGGATGCAGAACGACGAGTAT 1407 37 100.0 36 ..................................... ACGGCAATCAGACACGCTCTCAGCGACCACTGACAG 1334 37 100.0 36 ..................................... GGGGTGGCGGTCCGCCGCCAATTCGAGTCGTTCACC 1261 37 91.9 0 ............................CT......T | ========== ====== ====== ====== ===================================== ============================================= ================== 59 37 99.9 36 GTCGCGACGCGGTAGAAACCCAGCACGGGATTGAAAC # Left flank : CCAGCACGGGATTGAAACTGGCCCGGTCAGCCCTCGACGCGACTAACGCTCC # Right flank : GGGTCCGCGACGTTCGCCGTCCGCCGGGATCTTGTAGCCCCACTGCTTCCATTCTCGTATGTCCCGACTCGTCGAACGCGACGCGCACGGCCCGTTGAAGCTCGACGCGGACGACCTCGACCCGGAGAAGGGCGACGTCGCGGTCTGTCGTTGCGGGCTCTCCGACGAGCACCCGTTCTGCGATGGGTCGCATCGCGCTACGGCGGACGAATCGGACGACGAGACGTACTGCTACGACGAGGACGGCGAGCGCCGCGTCGTCGCCGAGGTCGTCTGCGAGGCCGACGGCGGGAACGACTAGGCTGGGCCTACTGGCCGGGCGTGGCGACCTCCTCGTAGGGCTGGACGACGATGAAGCCGCGCTCGCCCTCGAAGACGAGCTGGTAGCGCTCGTCGGAGGAGCGTCCGACAAGGTCGCTGAGGCTCCGATTGGACTCGACGCTCGGGGAGAGCTCGCGACTCCACGCGACGGTGGCGTCGGGATCGGTGCGGACGGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGCGGTAGAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 5701-794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000134.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5700 37 100.0 35 ..................................... TGTCGTCTTCGCCGATGCCGAGGGTGACGCGGACG 5628 37 100.0 35 ..................................... AGAGATGTCGAAGTAGCCGCTTTCCTTCATCGTCG 5556 37 100.0 35 ..................................... CTCCTCTGGCGAACTGGGATGCGTCGCTCGGCGCT 5484 37 100.0 35 ..................................... TGGGTTAAGACGTTCTCCCTGCCCCGTGTCCGTTC 5412 37 100.0 37 ..................................... CGTTGAGCATTTCCTTCGCAGTCTTCCGCGCTTGTTT 5338 37 100.0 36 ..................................... ATCTCCGTCTCCGCGGCGTCAGGAGAGGAGTTGATC 5265 37 100.0 35 ..................................... ATGTTCGTCTGACCGACGACCTGCCGGGCAACTCC 5193 37 100.0 37 ..................................... GGGAGGGCCGTGACGATGAGTGAGGCCGAACGCGACC 5119 37 100.0 37 ..................................... AAGTTGATGGAGACGGCTGTGATTCCGCTGATCGCCG 5045 37 100.0 37 ..................................... TACTGCCCGTCCGACATCCGCCACCGGAGGACGAAGC 4971 37 100.0 35 ..................................... ACGCTCGTCGGGACTGCGTGGGGAGTGATCTGGAT 4899 37 100.0 35 ..................................... TGTCGCGCGCTCGTCACTGGGTCGTGGGGTGTGTG 4827 37 100.0 34 ..................................... TCCTTAGTTCGCACGGGGTCGGTTCCCACGCTCG 4756 37 100.0 35 ..................................... ATCCTGGGAGAGTAGTCGGGGGAGGCCGTCCGCCG 4684 37 100.0 34 ..................................... TGACGTATCTCGACTTCGCGAGCGTTCGCGATGC 4613 37 100.0 37 ..................................... AGGTCTTCTTGATGATCGTCCCGACACGCCAGAGGAG 4539 37 100.0 37 ..................................... ACGACGGCTTCCTTCTGCGAGGTCTTCTTGATGATCG 4465 37 100.0 34 ..................................... ATGAGTGGAGAGCACTCGCGCCGGCTCGACTTCG 4394 37 100.0 37 ..................................... AGAGGTATCCTGCCCGGATGGAGTCGCGGACGTGCTC 4320 37 100.0 36 ..................................... GCTGGTCGCCGAAAACGGACGAGGCTCTTCCGTTGA 4247 37 100.0 36 ..................................... AGACTGTCGCCACGGAGGCCTCCGTCGCGCTTCGGG 4174 37 100.0 36 ..................................... GCCGCGGAGTTGCAGAGTGCGTTTGATGACGTCATG 4101 37 100.0 34 ..................................... GCAGCGGCGCACGAGCGGCGGGATGAGTTGATCC 4030 37 100.0 37 ..................................... TTATCTCGGCCTCTAGCTCGGCAAACACACCCAGCAA 3956 37 100.0 36 ..................................... ACGACTAACATCCGTCGAGACCATACAGCTCGCGAC 3883 37 100.0 35 ..................................... ATCGGAGTGGGTGTGCGAGCGTGGCTGCGGATGCT 3811 37 100.0 36 ..................................... TCGATTGCGAGAAGAGCGCGCCGGAGTAGTCGTAGC 3738 37 100.0 36 ..................................... AGTCATCGGGATCGACCTCCGTCGGCCGCGGGCCGG 3665 37 100.0 36 ..................................... GGGTTAGCTGTACGTCCTTTGCGCGCGGTCGGGTCG 3592 37 100.0 36 ..................................... CATCCTCGTCTTTGGGTTGATCGCACTCGGCATCCT 3519 37 100.0 35 ..................................... TCCGAAACGCTCACGCCGGGGCAGTTCGTGGCCGT 3447 37 100.0 36 ..................................... ACTACGCGGTCGCCAAGATTGACGACTCGGGCGGCG 3374 37 100.0 36 ..................................... CGTTCGATTCGGTCGACAGTCGTGTTCATTCGTCCC 3301 37 100.0 35 ..................................... CGGAGGCCGACGTAGCCGCCGAGTTGGATGATGAG 3229 37 100.0 36 ..................................... CCAACAGGTCAAACGGAACGGCCAGCAGATCGAGAA 3156 37 100.0 34 ..................................... CACCTCACACAGATACGCGTCGGGTTTTCGCCAG 3085 37 100.0 37 ..................................... TGTGCTCAAGGAGGTCGCGGCGACCAAACAACCGTCG 3011 37 100.0 34 ..................................... GCAACAACGGAGGCAACAACGGAGGCAATCAGTG 2940 37 100.0 33 ..................................... TCGACTCATACCCCGCGTCGAGCCACTTGCGCG 2870 37 100.0 40 ..................................... ACGGCGATTGCCACAGCAGCAGCGGTCGCACTGATGCCCG 2793 37 100.0 35 ..................................... ATGGACAGGGCGCGCTTCCGGGCGCGAGTATCCGC 2721 37 100.0 38 ..................................... ACCGCCATCCGCGCAGACGTCCGGCTCATCGTCATCGG 2646 37 100.0 36 ..................................... AAACTGCCGAAGTTCGCAACTGGGGTGCGGATAAGA 2573 37 100.0 34 ..................................... TATTCCTGTGGGATCGATGGATTATTATCCGCGA 2502 37 100.0 36 ..................................... GGAACGGGACATTCGAGAGTATGATAAGAAACGGTT 2429 37 100.0 38 ..................................... CCGCAGGGGAATACGGATCTTATTGCGACGGCAGAGAA 2354 37 100.0 37 ..................................... ATCACGCGGGAAGATCGGACGACGATAGATGTCGGGG 2280 37 100.0 36 ..................................... ATAGTTGAGTATCGGATTCGGATGGGGGGTTGTGAG 2207 37 100.0 35 ..................................... CGGGCCAAACGCGGAATGGAAGTGTTGTGTGTACG 2135 37 100.0 36 ..................................... AAGATTGAGGGTGTGGTGGGTGAGTTAGAGTCGGAG 2062 37 100.0 36 ..................................... GGGAGTCGCCGTCGAACATAACCCCGCTAAGATCCT 1989 37 100.0 32 ..................................... TCAAGACGAGTTCTTGAAGGAGGAAACAGTTG 1920 37 100.0 35 ..................................... ACCTTAGCGACTTCAATCATATTGTCCCGCATCTC 1848 37 100.0 35 ..................................... AGAATATCAGCGTCAGTAGCCAATACTTCCCGGGG 1776 37 100.0 35 ..................................... CAATTTTCCGTAAAACCGAAGTCGGATGCCGAACG 1704 37 100.0 34 ..................................... TTCATCTTCGTCGCGGAGCACTCGTCGGGCGACC 1633 37 100.0 37 ..................................... GCGGATTGGCGGTTCGGGCGCGTGAGGCGCTGAGGAC 1559 37 100.0 35 ..................................... CGTTGAGTCTGTTGTTTTCGAGCGTCTGTGGCCTG 1487 37 100.0 33 ..................................... GACGCGACGGCGCTCCCGCTGAAGCCCGGTGCC 1417 37 100.0 36 ..................................... ATTCGACGCGGACGCGCTCGGGGAGGACGTACACGG 1344 37 100.0 39 ..................................... ATTTCAGTTTGCATTTCTTGGATAATATGCGGCCACATA 1268 37 100.0 34 ..................................... CGTGGGCCGTGCAGGGAGCGGACTGGGGAGATCT 1197 37 100.0 38 ..................................... CTCCTCGCCGGCGCCATCGCCGACCCCGAACACAGGTC 1122 37 100.0 37 ..................................... GTCGCGACCCGCTTCTACGTAGCCGATGACAGTATCA 1048 37 100.0 36 ..................................... ATGCTGGCACCAGCGAGAATAATGCAGTTGGCACCC 975 37 100.0 35 ..................................... CGGGCGGTGATCTCGCTGCCGTTGTGGAGGAGGTG 903 37 100.0 36 ..................................... TCTTCGAGGGCGCTCGCGATGTCGAGCAGGATCCGG 830 37 97.3 0 ......................G.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 68 37 100.0 36 GTCGCGACGCGGTAGAAACCCAACACGGGATTGAAAC # Left flank : CCTCACCGCCTCC # Right flank : ATCTTCGGTCGGGCGGGAGTCCGATGCGTGATCTGCGTCGCGACGCGGGCACGCGGGCACCCCCTCGTCACGCCCGTTCGACGTCGATGCGCGCCGTCCCTGCGCGCACGAGCGGGTCGGCGATGTCCGCGTGGAGGGAGGCGACGCCGTCGCGGACGCCGTCGTCCACGGCGAGGGTCGTCTCCACGCTCGCGCCGTCAGCGCCGCGAACGATCACGGGATCGCCGTCTTCGAGTCCGCGTTCGGCCGCCTCGTCGGGGTTGAGGTGGAGTAGGTCGTCCGCGCTCGCGTCCGCGGCGCCGAAGCCACCGGCGCGCGAGCCGACGACGAGCGCGAGACCGTCGTCGGCCATCTCGACGTCGGCGTCGACGGTCCCGAACGCGGCGCGACCGTCCGGCGTGGCGAACTCCCTCTCATCGCCCCAGCGCTCGCCGACCGCGACGTCGGCGTGGATCGGACTCACGGCGCGGAGTTCGTCGAACGCTTCGCGCGGGCCGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGCGGTAGAAACCCAACACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 876-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000035.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 875 37 100.0 36 ..................................... AAGTTGAACGACGAATCGCCGGCGCGGCGGTCACGA 802 37 100.0 35 ..................................... AGCGGGACGTTCCCGGCGTCCGCAGACGATCCGCT 730 37 100.0 36 ..................................... CGTTCGGGGCGCTGCGGATGCAGCACGACGGGAGCG 657 37 100.0 36 ..................................... AGGACTACCACGACGTCGTCGCAGCACTAGAGATGG 584 37 100.0 36 ..................................... ATTCTCACGGCGTACGGGTCAGCGGAGGCAACGCAG 511 37 100.0 36 ..................................... GCGTTGAACACGTCCTCATCGGATGGACTCAAGTGG 438 37 100.0 33 ..................................... CATCTCGCGAACGCGCGGGATCAGGGTCGCTGG 368 37 100.0 36 ..................................... GGAAGTGGTCGAGCGTGTGCGTCTCGCCGTCGTCGG 295 37 100.0 36 ..................................... ATCGCGTCGAACGCCCGACCGACCTCCACAACGAAC 222 37 100.0 36 ..................................... CGGACGTCCGCCACGAGGTCCGGTCGTCGGAGGACG 149 37 100.0 36 ..................................... ACGCGCGTCCGCGGCTTCGAGTGCGGCGTCGCTCGT 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 100.0 36 GTCGCGACGCGGTAGAAACCCAGCACGGGATTGAAAC # Left flank : TGGAAGCCGCCGAGGGGACCGTGGTACTCAACTTTGATGGGGGTCCGCGGGAGATCTTCCTCCCGCTGACCGTCGCCGCGATCGCCCGGCCGGACGTCGTCGACCTCGCGCTCCAGTTCAGAGACGTCGACGAGGAGATCGAAGAGATCGACCTCCCGAACCTGATGAGTCGTCCGTCCGACGCGACCCTCGACACGCTCCGGTATCTCGTCTCCATCGACGAGAGTACGACACTTCCTCGAATCTCCGATGAGACGGGGAAATCGAGGAGTACTGCCGGCCGACACCTCGACGCGCTCGAATCTGATGGCGCCGTCGAGACGTGGATGGAGGGCAAAACCCGCCACGTCGCACCGACACTCGCCGGCCGACTCCGCGCGTGAGAGCCAAGCTTCGTCGACCCTTTTCAAAGCCGTGTACGGCGGGGGTCCACGAACGAACCCCCCAGTATCGCGTCTCCAGAGAAAACTATAGGTGCCATCCCCGAGAAAATACCCCCT # Right flank : CTATGATTCGGCCGACGTAGTTGGCATGACGTTGTACCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGCGGTAGAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 13498-14842 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000019.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13498 30 100.0 36 .............................. GCGTAGGGCTCGCCTGTGAAGGAGACGATGCCGCCA 13564 30 100.0 35 .............................. CGCTCATCGGTCTCCCTCCTTGGGTTCGACGTCCG 13629 30 100.0 37 .............................. GTCCGCTGATCGCGCGCCGACTTCGAGAGCAACCCCA 13696 30 100.0 34 .............................. AGGTTCTCGATGTCGCGTTCGTCACACCACGCGA 13760 30 100.0 35 .............................. CTCGCGAATCCGAAGCTCGCGCTCGACCTCGGCGG 13825 30 100.0 37 .............................. CGGTCATCTTCGGTGTCGGGATCGTGGCGTTCACCTA 13892 30 100.0 37 .............................. TCGATCTCGGCGAGGCTGGCGAGGACGTTGTCGTCCG 13959 30 100.0 36 .............................. CGAGGCTTAAGAGGTCTAAAATCGCGTCTTCAGACT 14025 30 100.0 35 .............................. CGTCACATCAACTCCATGCACATCCAACCCAAACC 14090 30 100.0 36 .............................. GCGATCAGCGTCCTCATCGGCTACCTCATTATTAGT 14156 30 100.0 35 .............................. ACCGAGCGCGACGACCGAACGGCGTCGTGGGAGCG 14221 30 100.0 36 .............................. ATCGATAGCGACGGTGGTCTCGCACATCGGTATCCA 14287 30 100.0 35 .............................. ACACGTGCCACACACCGCCAAGATCTGAGACGCAT 14352 30 100.0 36 .............................. TGTATGTGGCGCGTCATCTGGATCAAACCCGACCGT 14418 30 100.0 35 .............................. GACTCTGTGGACACCAACTCGGGGACTGCCGTGGA 14483 30 100.0 36 .............................. ATCGCCGGGATCGACGCCGAGTGCGTCCATGACCGG 14549 30 100.0 35 .............................. GGGAGCATGGGGAACGCCCTGATGGGCGCGCTCGC 14614 30 100.0 37 .............................. TGCGAGCGGTGTCGCGGACTCGTGTAGACTGTCGCGT 14681 30 100.0 36 .............................. GGTATCCGACTCGACTGAACGGTCATCTGTCTCATG 14747 30 100.0 36 .............................. ATAATAGTATCGAGCATTAGACAAGCCACTCCGATT 14813 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : ACGAAACGGTCGAACACCCGCAATTGAATCGGAACGTGAGCTACCAGTACCTCCTCCGCATCGAGGCGTACAAACTGAAGAAGCACCTGCTCACCGGGGAGGAGTACGTGCCGTTCAAACGGTGGTGGTAACGCTGCCCTACGCCATCGTCGTCTACGACGTCGCGGCCGAGCGGACCGCGAAGTTCCTCACGTACCTCCGCCGATACCTCACCCACGTTCAGAATTCGGTGTTCGAGGGGGAACTCACCGAGGGACAGATCGTCGAGGTAGAAGAGACGCTCGAATCGATGCTCGAAGTCGGCGAATCCGTGATGGTCTACCGGATGGCCTCGGAGAAGTACGTAGAGCGATCCGTTTTCGGCGACGATCCCATGGACGACCAACAGTTCTTGTAGCGTCGTCGTCGACCTCCGGGGGGTTCAACTGATATCGCCGGTCGACGAAAAGATTGAGGTGAGAACACCCAGAAGGAGAGGTGTCGTCGCTGAATCGAACACC # Right flank : ATAATAGTATCGAGCATTAGACAAGCCACTCCGATTGTTACAGACGAACCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 936-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANO01000448.1 Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 935 30 100.0 36 .............................. GCGTGTCTGATGCCTCCCAAGGGCCCGACGAGTCAC 869 30 100.0 36 .............................. GTCACTCTGCAGGTGGCGGGCGGCGGCCGCGAACGC 803 30 100.0 36 .............................. AGGCGTACAAGTCGCCGGACAAGGTGCAGCGCTTCG 737 30 100.0 36 .............................. GCCGGGTCGCTTGGAAATGTGTTTGCACAGGCGCCA 671 30 100.0 37 .............................. TCGGCCTGCTGCCGACGCCACCGCGGCCGCACGTGCG 604 30 100.0 34 .............................. GTGACGGCGACCCGCTCGAAGTTTCGACCGGGTA 540 30 100.0 35 .............................. CCGTTTAACGGCGAACTCGCTAGCGAGACGAAGGT 475 30 100.0 36 .............................. CAGACTCCGGTGGAGGTGTGTGAGAGCGTGAGCGTC 409 30 100.0 36 .............................. AGTCCCCAGCTCCTACTACTACTACTGAATACGTTA 343 30 100.0 35 .............................. TTGGAGGCCATCTAGGCTAACTTGGGTTTCTGCAA 278 30 100.0 35 .............................. ACCTGGGAGGCCTACGTCGAAGACATCTACAACGA 213 30 100.0 37 .............................. GCGGACTCGCCGAGCTGGCGGGTCGTGACGGTTGACA 146 30 100.0 33 .............................. ATGACAGCCCTCCGTAGGAGGCTTGAATCGCGG 83 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTACAGACGAACCCTAGTCGGATTGAAGC # Left flank : CCTAGTCGGATTGAAGCTCAGACTGCGCCCGATAACGGGACGTGGTCGCT # Right flank : CGCGCGCTCCCATCGGAAAAACGCCAAATACGCCGCGTTACAGACGAACCCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTCGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //