Array 1 1314728-1314304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1314727 30 93.3 36 ......T........G.............. TGTCGGATATCCGTCTGATTTTGATTTAATCGTCAA 1314661 30 96.7 35 ................T............. ACTGGAAATGGGATCTTGCAGATATTCTTTTGCGA 1314596 30 96.7 36 ................T............. CTATGGACCGCCGCCCGGTACTGGTCGGTTTTACTG 1314530 30 100.0 35 .............................. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 1314465 30 100.0 37 .............................. GGCTGTGGGTGAGCCTGTCAATCACATACTTTTTAGC 1314398 30 100.0 35 .............................. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 1314333 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTGACAGTAACACAAGGTGTATTGAAAC # Left flank : GTTCCCACCCGCGTATGCAGCCCATGTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTTCCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGGCTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGTTAATCTGGTATTGAGCCATTTCATAACACCTCATATATTTAGAATTTTGTGTCCCAACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTTTGGAACCTAGCTTTTTACACAATTATACGGACTCAACTGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 3198299-3200151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3198299 32 100.0 35 ................................ AATATGGAGCATCTGATGGAACTGGTTTAATGCGG 3198366 32 100.0 33 ................................ CCATATACCACAAATGACGCGACCCAGTTGATA 3198431 32 100.0 33 ................................ ATGAGTCTCTGTTTTGCAGTAATAGCCCGGGCT 3198496 32 100.0 36 ................................ GAGAGATTCTACCCGTTTTACTTCCGACAGCTTTTC 3198564 32 100.0 35 ................................ TTTTTCCACATCCTTAAACCGGGCAAAATATTCCG 3198631 32 100.0 39 ................................ ACATACGTTGAGCTATTCGCGGGCATCGGAGGATTTCGA 3198702 32 100.0 33 ................................ ATTTTCTCAAAAGTTTTCCCGTCAACATGGACC 3198767 32 100.0 34 ................................ TTCTTAGCCATGTAAATAATCCCCTTTCGCTAAC 3198833 32 100.0 37 ................................ TTCTCTTACATCAACAATCCCTTTATAAATAAAGAGT 3198902 32 100.0 37 ................................ CCAAAGCGTTAGTTCTCTTCGGTTTACTTTGTTTTTA 3198971 32 100.0 36 ................................ TTTTAATATCGCATTGCCTAATCGCGTTTTAAGATC 3199039 32 100.0 34 ................................ TCAAGCTCGGCGACCTCGGCTCTGCGTTGGTCTA 3199105 32 100.0 35 ................................ CCTTGGGCGTCGAAAAATTCAATACCCGTTTGCTT 3199172 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 3199239 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 3199306 32 100.0 38 ................................ TACAACGTCCCTTTTAGCTCCGTTTAGTTTCTCGTACA 3199376 32 100.0 33 ................................ GCTAATGGAAAACAAAGAGAATCATATATCAAA 3199441 32 100.0 34 ................................ CTTGAAAACTCCTGTTTTATTGTTCATCATGGAA 3199507 32 100.0 37 ................................ TCGAAGTAATCACTTCCAGCCCGGGATATCTTTAGGC 3199576 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 3199642 32 100.0 35 ................................ TGGCCGCCCCTTGGATATTCGTACAACGCACTTTC 3199709 32 100.0 36 ................................ TAATTCAAGTGATACGACCATAGCCGCATTGATGTA 3199777 32 100.0 36 ................................ ATGTTTGCGTCAACGACGGCCTGTTGCTGCTTGCTC 3199845 32 100.0 38 ................................ ATTAAAAATTTACCAAGTCAAGCCATTGACTGGGGAGC 3199915 32 100.0 37 ................................ ATCCGGTGCATCAGAGATTGGCTCAACTGTATTTCAA 3199984 32 100.0 35 ................................ CATCACCGGGGTGCAGATTTATTGTCAGCGATTTT 3200051 32 100.0 38 ................................ ACCATGAGTTTGCAAAATACATTCAGCGAGAAAATCAC 3200121 31 78.1 0 ..............-.T.C...CTT...G... | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.2 36 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTGTTAATTACTTACGATGTGTGTACGACCAATAGTGATGGGCAAAGAAGGTTGCGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGAGTCCAGGACTCTGTCTTTGAATGCAATGTAGATGCAGCCCAATTTGCCAGTTAAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGTTTTATCAATTAGGCAATAATTACAAGAACAAGGTTGATCACATTGGTATGAAAGAATCCATTGATTTGGAAAAGCCATTGATTTTCTAATGCGGATGCATGGTGCGAATGTGAAGTGCACATGAATTTCCTGGGACATTCGCACCATGCATTTACCATATAAATCCATTTTATTGTCTATAGGCATTTTGGGATTCATTCAAACTGAACAGAAAGATCATTTTTTTGAATGGTGTGATCAAAATATGTTTAGTTTTGAATATTTCTCTCAATTTTCGCT # Right flank : TGGAAATATTATTTCCACCCATACTTCCAGGTTAGACTACAAATTGATTTACAAGATAGTAATCGGGATACCTAATAACTCCAACATTTACAAGATGTTTACTGCTTGAGCTACTATCGAACCAATATTGAATATCAGTACCTCTTGTCAAATATAATGCCTCTGATTGGGCATCGTGATCAGAAAAATTCATGATTACTTGTTTGCAAGATGAACCGATTTCTGATGAACAATCTTGCTGGGTAGCTGCAGATGATGGAATTGGAATTATGAGTAAGGCTGCAAGAATAGAAAAAATAATTGCCATTTTGGATTTTACATGTTTCATCATATTCATATTAGCTTCCTTTGGTTTGAATTTTTACACCCTCCACACAATTGCAATCCTTCAAGCTTGATATATTGATAGAGGGTTCCATCCCTTCCTGCCACAAAACCACATTCACTCCTTTATTAGTCTATTATTGTAAATCGTTCTCCTTAAGATCTATTAACCTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3598274-3599984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3598274 32 100.0 38 ................................ ATTTCTGTTGTACGTAGTGCTTTCAAACGTCCGGATAA 3598344 32 100.0 34 ................................ AGTCTCTGAACTTGTAGTGGCTGGAATCACTACA 3598410 32 100.0 36 ................................ CTTGATCTCAAGCTGAACAACGGTGATGAACGTCTG 3598478 32 100.0 35 ................................ TCAACATAATTTTGTTTTCTAATTAAAAGTAAATC 3598545 32 100.0 34 ................................ AAAAAAACAGTGAGCGGAATCAGAAAGCAAGCCG 3598611 32 100.0 35 ................................ AATGATGGAGCAATATAAACACGCAACCAATTATA 3598678 32 100.0 33 ................................ ACTTCTTTTTCTTCAAAGGTGACCGTTTTGAAA 3598743 32 100.0 35 ................................ AATATCCACGAATTAGGTTATACTTGACGTATCTG 3598810 32 100.0 38 ................................ TCGCAATCCGTGGAATCCAGTGGGAATCAGAAGAAGCC 3598880 32 100.0 36 ................................ AATATTAAGACCATGTAATTGATTAACATGTTTGAT 3598948 32 100.0 35 ................................ TCCCTACCAAAAGGAGGGTAGGATTAGTGGAAGTT 3599015 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 3599084 32 100.0 33 ................................ ATCTTGATTAAGATACAAACTATCAATTGTGTA 3599149 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 3599218 32 100.0 33 ................................ CTCACCGGCCCCTAGCGTCAGTTCGTTCCAGCG 3599283 32 100.0 34 ................................ ACAACATATCCTGATCAAGCGCGTTTAGTAACCT 3599349 32 100.0 35 ................................ ATTTTAATTTTCCGTTCCCCTCGTGTTGTTATCGT 3599416 32 100.0 39 ................................ AGATGCGGTGATCGTTACGCGAGTACGTAATTTGGTCAC 3599487 32 100.0 34 ................................ ATACGGCAATGAATATGGGCCTCAACAAGTTCTA 3599553 32 100.0 35 ................................ GCTGAACTCGATATCCATATCTGGAGATAACTCTT 3599620 32 100.0 33 ................................ GGCGATCAAATGGAACCCGGGGAAACAATTAGA 3599685 32 100.0 34 ................................ AACCATGTAAACGACGACTTTGCCGTGTATTCTT 3599751 32 100.0 37 ................................ CTCAACGCTTCCAGCAAAAATAAACCCGGTATTGCCA 3599820 32 100.0 36 ................................ ATCTCTCTATCATGGAAAAAAATAGACGAATAAAGG 3599888 32 100.0 33 ................................ ACACTGTCCGTCAGAAAAAACCGACTGTTCCAC 3599953 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATCTCCCTAAAGTTTCCAAAATGCTGGCTGCACATGTAAATTGTGAAGATTTCACGGAAGAAGTTATTGCCAAAGGGCTTGATGAGAGGACATTTGGATTGTGGAATTTTCCTTTCCCTTAAAGGTAAATATGCCATGACGTCTCGCGCTAGTAATGGAAGACGATATAGGGTATTATGGAAGTGAAAAAGAGTAGGTACTTTTATAATTGAACGTTACTGATACATCATAAAAAGTGATAGGGAAGATATATGTTTATCAAACATTATCCAGGTAACGAGTATATAAAGAAGCAATGATTTGGAAAGGTTTATTTTTTTCTGGTGCGAATGTATAGTTCACATGAATATCCCGGGAGATTCGCACCATTATTTTACCAAAAATATGCATGCATTTGGGTTAAGTATATTTGATTGCAATAAATTTGAATAAAAAAGTCATTAAATTGAATGATTTAATCAAAATACGTTCAATTTTGATTGTTTTATTCAAATTTCGCT # Right flank : TTTAGAACGGCCATTTCTGTTTTTAAATGGGCCAACATAGGACAGATGAGGGAAAACCTGCTAGGAGTGAAAATTAGTTAGCAAAAAATCGTGGAAGGAAACTCAATGTTGAACCAGTGACCGGATTAGCCCGTATGCTTCATGACATGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3600632-3601201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3600632 32 100.0 35 ................................ CAGAAGTACCCCTTGGGACATATGATGTGAAGATT 3600699 32 100.0 35 ................................ GTGAACAGACCTCATGATGACCAATAAATGATTAC 3600766 32 100.0 34 ................................ CATTTTAGTAACAAAACTGGAATAGCTTTCGATA 3600832 32 100.0 33 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTT 3600897 32 100.0 34 ................................ TTTCGTAATGTAAGTTTCATGTTTTCCAGACAAA 3600963 32 100.0 38 ................................ GTCAATATGGGATCGATAAATTTGGAGCGAATTGATAA 3601033 32 100.0 35 ................................ GAATTTGTAAAAGTTCTACAAGATGAAGATATTAC 3601100 32 100.0 38 ................................ ACCACAATATTTTTTAGGCCATTCCAAATGCCCTTGAC 3601170 32 90.6 0 ........A.........A............C | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.0 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGG # Right flank : CCTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGATCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTGTAAAAATTACTCCCTATTAATTGATCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3670214-3671183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3670214 32 100.0 33 ................................ CCAAGTCTGGTAAACCAATGTTGACCTGCTGGA 3670279 32 100.0 35 ................................ GGACAACTGGACATATCAAAATGATTGTAGAATTG 3670346 32 100.0 36 ................................ GCGAAACACCCCACCGTTAATTTCACGCAATTTCCC 3670414 32 100.0 33 ................................ AGACGGTACGTTAATCGTACCAATGACAAGGAG 3670479 32 100.0 36 ................................ ATTTTCCCATCATTATCCGTGATGGAGATTTTAAGC 3670547 32 100.0 34 ................................ ACCCAAAATCATTTTTTCTGTGTCGGACAGCTCA 3670613 32 100.0 34 ................................ TTGTGTAAAAAACTGATTTCGAATGAGCGCCAAA 3670679 32 100.0 36 ................................ CTCATAGATTAAATCTTCCATGCCAAACATTTTACG 3670747 32 100.0 38 ................................ CAGTCCCGCAACATGAATGGGACTTGTGGGCTCTTGAC 3670817 32 100.0 35 ................................ CATGATGATGTCAAAACGCTCAACGATGTCGCCGT 3670884 32 100.0 34 ................................ TTTCGCATCGGTCACCCTGCGAAAAAATACATAA 3670950 32 100.0 35 ................................ AATCAATTCAGATTTAGAGTGAAATAGGTCCTCAA 3671017 32 100.0 39 ................................ AAAAACTCTCTCACCTAATGCATTTGCTATTGCTAGCAA 3671088 32 100.0 32 ................................ TAAAAAACGAGATGCCAACGGGTCGCCCGGAT 3671152 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 15 32 100.0 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTACAAGAACAAGGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAAAGCCATTAATTTTCTAGTGCGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTAATTTTGAATGTTTCTCTCAATTTTCGC # Right flank : TTTTTTGCGTAGACTACGAGGTCACTCCCGCAGGTTGTAAAGGAAGCTCTGGAAACCAGAAACAAAGCAGCCGTGGCAGACGTTACGAGCTTGCCTCCAATATGCTACATCGATGGGTAAAAGACTATGAGTCAGGAAAATGAGGAGTGATTTCGGTAGAGGGGATTTGCCCTCTGGAAACAAAGAAGTTGTCCCAAGAAAATGACCACTTAAAACGGCTGCTAGGGGAAAAAGATCTTGAGATCGCTATTCTGCGTGACCTGGCAAAAAAGAAAAACCCTCACTTGCTGACAAAGTTGAAGTAGCCGAAATCTACATTCAACAGGGATACGCTATAACGCTCGTGCTACGTTTGGTGAAAGTCCCACGTTCGACTTATTATTACATGAAAAATAAAAAAGTCATGAAGAAAACAGTTAGTGAGGGACGTCCAGCGCCAGGGTATTCCTATCAAGCGAATGGAACAAAAGTACCTGATGAACATCAAGAATGGCTCATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3684138-3685051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020327.1 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 3684138 32 100.0 35 ................................ AAGATCTTTTTGTTTTAATTCTTTTTGTATATCTT 3684205 32 100.0 36 ................................ AAAAAAGTCATACCAATCAATACCTTGTGCAACAAG 3684273 32 100.0 36 ................................ TGGAATTCTATTAGCGAAATCCAGTCAACGAGCATT 3684341 32 100.0 37 ................................ AACTCTACTGCATTGTCCGCGTTAATCTTAATCTCAA 3684410 32 100.0 40 ................................ TCATACCTTTGGCAATCATGTATTCACGGAAGCTTATAGA 3684482 32 100.0 38 ................................ TATTATTTGCGTCAAAGCAGCATGTAACTCTTCGGCCC 3684552 32 100.0 34 ................................ GTCATAAAGGAGCTGATCTAATTGGATGTTTTCG 3684618 32 100.0 38 ................................ ACCAGCTTCCGTATCCCAATCACAGCCATTATAGGCTA 3684688 32 100.0 36 ................................ TTTGATTTTTGTTGAATTGATCATTTTTTATCCCTC 3684756 32 100.0 33 ................................ GAAAAACAAATACAAAAATAATTACACCAAGAA 3684821 32 100.0 34 ................................ AGATTTCGGGACCAGCGATGACAAAACGTATGAA 3684887 32 100.0 37 ................................ CCTTGAAACTCCCAAATTGGTTAATTAAAAAGATCAC 3684956 32 93.8 31 .............................T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 3685019 32 78.1 0 ..TA...........A..AGT..A........ | C [3685047] ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCGAAAGACAGAGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATATCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATTAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //