Array 1 331972-333525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXO010000001.1 Micromonospora sp. C32 C32_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 331972 28 100.0 33 ............................ GGGCCCGGAGGTGGGCCGGTACCGCATCGTCCT 332033 28 100.0 33 ............................ CTCCGGCCGCATGACGGCCTCACCGCCGCTGAG 332094 28 100.0 33 ............................ CGTCTGTTGTGGATCTATCTCGACCTCGCCGAC 332155 28 100.0 33 ............................ CCGGGTGCCGCGGATCGACGCGGCGACGCCTGC 332216 28 100.0 33 ............................ GGAGACGGCCAAGCATCAGCCCGGCGGGTTCAA 332277 28 100.0 33 ............................ CCGGGCCCCGCATAGACCGCCCCCGCCCACCGC 332338 28 100.0 33 ............................ CCTGAACGCCGCCGGGCGCCTGACGGCCGAGAG 332399 28 100.0 33 ............................ CGCCGTCCGGTGGAAGGCGATGTTCTCCTCGGT 332460 28 100.0 33 ............................ TTCACGTCCCTGTCCGGCCGTCTCGATGAGGTG 332521 28 100.0 33 ............................ GGCGCTCGCGCCGCTGCTGCCGGCCCTGGTGCC 332582 28 100.0 33 ............................ CGTGTCCAGCGGCTCCGAGCCCGGGTAGTTGTC 332643 28 100.0 33 ............................ TGTCGACGGGTCGCTGAGTTGCACCCCAGATTC 332704 28 100.0 33 ............................ GCAGCTGGAGACGCCGCTGGAGGAAGCCGGCAT 332765 28 100.0 33 ............................ CGGGTAACGGAACGGTGACGGTCGAAGGAACGG 332826 28 100.0 33 ............................ CAAGCCGACGAAGACCTTGCCGCCCGACGCCGC 332887 28 100.0 33 ............................ CCGTCCGTGCATCTGCGGCCGGGCCGAGAAGAA 332948 28 100.0 33 ............................ CGGACAAGGCGTCCGTCCCAGAGAAAATCGACC 333009 28 100.0 33 ............................ GGAGATGGGCGTGGTGGACGAGCAGTGGATCGG 333070 28 100.0 33 ............................ CGTCGCCGCGCTCAACCCCAACCGGCAGCGTCC 333131 28 100.0 33 ............................ TCCATCGCGTCGGGGGCGGGTCCAGGTGTCCGT 333192 28 100.0 33 ............................ CCTTGATGCCCTGCAGGCCGGTGTCGCGGATCT 333253 28 96.4 33 ..................A......... GCTCACCGCCGAGATGGTCCGCCACGCTGTCGT 333314 28 96.4 33 .................A.......... CACCCGGGCTACCGGCAACTGGGGCAAGGGCAA 333375 28 96.4 33 ..............G............. CGCGGCGGCGCCGCCGACTCCGCGGCCCTACCC 333436 28 96.4 33 ........T................... CGCCTCAGCGGTGGTGACGTTCGCGGCGGTCAC A [333455] 333498 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TTGTCGGTAGCCGCCCCGCTACCTCTCATGGCCGATCAGAGGGGGAGCGGTAACGCTTGACATGGCATGCCCGGCGACGCATCAAGACTGAGCGCCACAAGCAACAAGCAGGTGCTCCTGCAGTTGCCTGACGTTGTCAGCTGGTCGGGCCGGATCTGCGCTGGCGTCTTGGGCCCATCGCTGATCACACGTTCGGTTAGCTTCCTAGACAGGCAGGAAGCGTCCTTCCTGGGCCAGCCGGGGAACGCGCGACATGGACAGTTGGGCGCCCCGACGAGCGCTCAGCGGCGTTCACAACGAGGTGTCCCCTGCGTGCGCCGTCCGATCTTGCCGCATCGTTCACCAGCTCGACGGAAGCAAGTTTCGCCTTCAGCCTCACAAACTATGCTTTAGCCGGGACTCTCAACCCACTACGTAGACCGCCGCCGAAGGAGACGATCTTGCGGATCGTAGTGAATGAAGACCAAGAAGTCGATCTTTAGCGTTGCAGGTCAGGAAGT # Right flank : CGTTGAAGCCGTACCGCCGGCCGATCGTCTCGTCCTGCTCCCAGCACGCGGGGCTGATATGGCCGGCGAGCCGGTATCGGCCCGGCTCGCGCAAGCCGTTCCCCGCCCAGGTGGAGATGATCCAAGGAAGTGACCAAACGGGCTTCGCTCCGTCGCGATGCAATCTCCGTCGTCAAGGCACCCAGTCCCGATGATCCAGTGAGCGCAGGAGAAACGGCGCTGCTTCGCGCCTGAACGTCTGACAACGACCGTCGATCGGATCATGGCCGTCGAGCTCGGCGGTACCTAAAGTGGTGCGGTGCTAACCGTCGGCGTTGACCTCGCAGCTGCAGACAAGCGCACGGCAATGGCCGCAGTTGAATGGCTGCCAGACCGAGCAGTAGTACGTGATCTGCTCCTCGGCGTCAGCAACGCTCAAATCGTCGAGGCGGGCCGGAACGCGGACAAGACCGGGTTGGACTGTCCATTCGGATGGCCGGCACCCTTCGTCGCACTCGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 340856-342167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXO010000001.1 Micromonospora sp. C32 C32_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 340856 28 100.0 33 ............................ CTGCGAGCAGATCATCCGGCCGTTGTGCTGGAC G [340873] 340918 28 100.0 33 ............................ GTCCAGGACGAGCGCGCCCGGGTCGTTGAATGG 340979 28 100.0 33 ............................ CCCGACGGCGCTGGCCCTGTACCACCGGCTGCC 341040 28 100.0 32 ............................ CTCGATCGTCGGCCCTTCCCGGTGAGGGTTTC 341100 28 96.4 33 .......G.................... CGCCGGCGACTCGTCCTCCGAGCCCTCCCACAC 341161 28 96.4 33 .................A.......... CAGCTCGTCGAGCGGCACCTGCGCCCGGTCGTC 341222 28 100.0 36 ............................ GTCGCCGCGTCCCAAGGGGGAGGAATCATGCACAAC 341286 28 100.0 33 ............................ CCTGCGCTACCTGTCGTTCAAGCGGGAGGCGCC 341347 28 100.0 33 ............................ TGAACGCGAGGGCGGCACGCAGTACACGGAAAT 341408 28 96.4 33 ........T................... CATGCTGGCCTGGACATCCTGGGTGGGCGCCGC 341469 28 100.0 33 ............................ GACGAAGTTCCCGGAAATGCTCGGTGGCAGCGC 341530 28 100.0 33 ............................ CTGCGACACCGCCGAGGTGGCCCCGCCGACGAT 341591 28 96.4 33 ..T......................... GCACGCGAGGAGTTCCCAGCTGACCCTCCCGGT 341652 28 100.0 33 ............................ CCTCTTTCCACGGGTCACCGGTCGGCGCGAACG 341713 28 100.0 33 ............................ GGGGAATCTGGCCGTGCGGCTGACCCGGTTGGG 341774 28 100.0 33 ............................ GGTGACGGTGTTGGGCTCGTTCTCGTATGACAC 341835 28 92.9 33 .............CT............. CGGCGACGAGTGGCGCAACGGCGGCTGGGTCCG 341896 28 96.4 33 .............C.............. GCGTCGCCGCCGTACGCCGGAGCCGCTGCCCGG 341957 28 96.4 33 .......................A.... GTCGTTGACGAGGTATTCGCGCGGCGGCGCGAT 342018 28 92.9 33 ................G....T...... CTCACCCTCGGTCACGTGGATCTCGTCGCCAGC 342079 28 100.0 33 ............................ CCGGAAAGTGCCCTCCCACGAGGCGTTGACGCT 342140 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ==================================== ================== 22 28 98.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGGACGTCTGGAGAGCCTTGTACGACGCCGCTAGAGCAGAGTCCGGAGAGCTGGGTGATTTCGCGCCGTACTGGGTGTTCTCCGGGCCGGCGAAGATCGAACGACACGTGCTGCCCTATCCGCTCAGCCGCGACCAGGCGCGGTTCGACCGTCTCAAGGCGGACCTGGTGAGGTATCGGCTCGCGTTCGGCCAGCCGCGGCAGGAAGACCTACTGCTCCTTCTACAGCGGCAGACACTTGGAGAGAGCGACCTACCGGACATCCTGGATCTTCGACCTCAGCAGGCTCTTGATTCCATGTAGGAATCGGGCACCACCGAGTATCTGGGCGAGCAGATGACGGCCAGTGGCGCTCGCCGAAGTCGCACTGATTCACTACGCTTTCATCGAGGTCGCCAGAGGTATTGGCTAGACACCAGACCGAAGGCAAGGGGAACGATCTTGCTGGCCATAGTGAATGAAAACCGCGAAGTCGATCTTTAGCGCCCCAGGTCAAGTAGT # Right flank : CGCCCATTAGTCCGAGGCCGCAAATGCCTATCTGCTTCCCTATAAGCAGGGTGATTCCCCGCCCGCGGTTAGATCAAGATCCCGACGATTCCGTTTCGTTGGTTGCCGTAGCTGCGCGGCCGCGCCGGCCAAAGCAACGGCGCTTGGCCGCCTTGCTCCAACCTCCCGCGGCTGCTGGATTGGTCACCGGCACCGCGGGTCGGCGCATGAGTGTCACACCCTCCACATCTACCGGCGTCCAGTGATGGTCGTGCGCGACGAACGACAGTCGCTGCTCGCCTCGCACTTGGAACACCATCAGGGCGCGCCCGGCACCCGCCATTTCGGTCACCCGGTTCCACAACCTGTTCCGTACGCGGGCGCTGACGTGTCCGACGTACACGCCGGCTGAGAGTTCGAAGAGCCACTGCGTCAGGTGGCCTCGAAGTCCGGGTGGACATGACGTGAGGATGATGACCGTCATCAGAAGTCGACCTCACCCGTGTTGGCGTAGTTGCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 353131-354315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXO010000001.1 Micromonospora sp. C32 C32_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 353131 27 96.4 33 .....-...................... GACGAGATCCGCACCTGGCTGGACTCTGAGCAG 353191 28 100.0 33 ............................ CGACGTCGACCGGCGGCGCAACAAGGTGAACGA 353252 28 100.0 33 ............................ GAAGTACCCCGACACCGTGACCGTTCTGCTGTA 353313 28 100.0 33 ............................ CGACCGGGCCGCGATGATCGAGGCGATCTACGA 353374 28 100.0 33 ............................ GGACCGCTCGGATTACACGGGCTGGGCGGTGGT 353435 28 100.0 33 ............................ CCGCCAGGATTACGACGTCTGGAAGCCGGTCGA 353496 28 100.0 33 ............................ CAGCTCGTGCCAGCGCGCATAGAACGCCCCGTA 353557 28 100.0 33 ............................ GGCAGCGAACACCCTCACCACCACCGCACCGAT 353618 28 96.4 33 ........T................... CTGCCGCCGCCCACCCCCGACAACCCCACCCCC 353679 28 100.0 33 ............................ CACGCCCTGCTCACCGAGCCACGTCAGCACGTC 353740 28 96.4 33 .........................C.. CTTCGCGCCGCCGCCGGAGTAGCGGGCGATCGT 353801 28 100.0 33 ............................ CATGACGTCGCTACTGAACCTCGCGGACGCCTT 353862 27 96.4 33 .....................-...... GCTGTGCGGCACCACCTTCGCCCCCACCGCCTA 353922 28 96.4 33 .....................A...... CTCGGCCAAGTCCGCATCCAGATCATCCAGGTG 353983 28 96.4 33 .....T...................... TCGTGGGCGGGGGTGGGCGCGTACTCGGGCGTC 354044 28 96.4 33 ........G................... GCCCTTGGACGGGTCGTCCTCGCCCTCGGCGCC 354105 28 92.9 33 ..................A....T.... CGCGTTGGCCAAGGTCCGCCACCCGGCCACCAG 354166 28 100.0 33 ............................ CTGGCCGAACACGAGATTGGCCATGTCCAGCTC 354227 27 89.3 34 .............G...A.......-.. TCGGGAAGTTCGCCACCGCACCGCCGTGGTCGAT 354288 28 92.9 0 .................A.A........ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 97.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCTTTGGCCCAGCAGCAGGCATACGGCGAGGCATTCCGAAAGCTCGTCGACTTCCGTACGGCCCTCGAAGAGACTGCGAAGGCCGGAGCGGCACTGGCGCGAGAAGTGGGCGACAACCTCTTCGGCGGGACCTCGAACTCCCCGACATCGAATAGGCCTGCCACAGACAGCGGCTGCGCTCTAGAGAATCACGGCGAACCGCTGCGCTGGCAGCTGCCGTATTCGAACGTGTCCAGAGTCCGGCACGCTGGCGCGACGGCTCCACACGTCACATCGCCCCCTTGGCTAATCGGCAGCTCTTACCAGGGGCGTCAGCACCTGGGCGCACCCCACTGTTACCGCCAGTCTTCGTGTCTGCCGCTCGCCCTGCGTCGGCCGAACCAACTACTCTATTGCGAGTACCGACCTCCTATGGTCAGCCAGCGCCGAAAGGATGATCTTGCAGGCCCTAGTGAATGAAATCCGGGAAGCCGATCTTTAGTGCCGCAGGTCAAGTAGT # Right flank : CCCCGGCTGAGACGGGGAACGCGGAGCGTCGTTCACCTCGTCGAGTTCTGTTCCCCCAAGATGCAGGTATTACGAGACCAACAAGTCCAATGTGCTCCGGAAGCTAGCGGCCAGGCTTTCAACGATCCGCTGCCCCTTGCCACTCGCTGCGAGTGAGGGACGTCCGATCACCCCGGACTCGGTGTAAGCGCCCATTCCAAGCGTAAGTAAGTGCGGATGCTCGGCGACGTGATCGCCCAGCTCGTAGCCGTCGCGCACAGTCTCCGGCGCCACGTGAAGCAGAATCGAGGTCTCAATCTCCCCGGCGTGCATGTCGTCATGCAGGGTGCTCACGATGCCGGCATCCTGGCATGCAGTCTCCCAGGCTGTCCGATTCGGAAATAGCGCGAGCTGAGGTCCGGCGACGTTGGCCTGCTGCACGATGTTCGAGAGCACGTAGTTCCCGCCGTGACCGTTCACGATCACGAGGCGCTCCACGCCCGAGCGCTGAAGCGACTCCC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //