Array 1 684-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000028.1 Fischerella thermalis WC442 NODE_50_length_2697_cov_31.487949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 683 37 100.0 34 ..................................... GCGAAGGAAGGGTGGCAATTTTCCTATGTGAAGC 612 37 100.0 34 ..................................... CTCTCTCAGCTAGCGCCTCTTCTCCATCTTCTAA 541 37 100.0 36 ..................................... CGAACTTTCTCTCCTCTTTTTCATCTGCTATGATGA 468 37 100.0 33 ..................................... TTGCTTTGCTACACAAAACCCGAAACGCAAAGA 398 37 100.0 34 ..................................... GTTATAGTGGTAGTGTAGAGATAAGAGGTTAAGG 327 37 100.0 33 ..................................... TTGAGGGGTATGACCTAGACATATCGCCAGATA 257 37 100.0 34 ..................................... TAAGTGGCAAACGCGAGAGCAGTATTTATCCTGG 186 37 100.0 40 ..................................... GGGGTAAGGATGTACGCGAAGCAATCGACTGGATCTTCGA 109 37 100.0 35 ..................................... TTGATATATCTTGTAGCGAGAATTGATTTTGTAGT 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTATTAGGGATTGAAACGCATTGACAAATAGGCAGCCAGAGATCTCGCTACAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCGACAGTTACTTGATCTCCTTGTGTGTAAATCATCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCTTATCCACTTGATTATCGCCACGACTGTCCGGGTTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGATGAGTGCTACCGGATAGTGCTAGAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 1943-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000028.1 Fischerella thermalis WC442 NODE_50_length_2697_cov_31.487949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1942 37 100.0 37 ..................................... GGAGAGGAAAGACTTGACCTCTTTATCCGAGCAGAAC 1868 37 100.0 33 ..................................... GAAGCTCAGCCAGGCTCCTAGCCGCTCTGATAC 1798 37 100.0 36 ..................................... ACGCCCAATCCGGCTTCATTTATCCCTATCTCTATC 1725 37 100.0 33 ..................................... GCCAGCAGAATGGCGATGGGGTGAAAATCACGC 1655 37 100.0 35 ..................................... AAAATAGCGCCAGATATCTCGGTCGGCGGATATTC 1583 37 100.0 40 ..................................... GACAGTGTACTTCCAGACCACCATTCTCATTGNNNNNNNN 1506 37 94.6 37 NN................................... GGGAGTGGGAAGGCGGTGGCTGGGCTGCGGCGAGATC 1432 37 100.0 39 ..................................... GATAGCACTTCTCCGAGTCCAGCCAGCGGCNNNNNNNNN 1356 37 97.3 41 N.................................... CACGAAGGATGTGGCGGCTGCTACGGAGCAGTTCCTGAAGG 1278 37 100.0 39 ..................................... AAGGCGCGATCGCCCCTCCGGCACGCTTGNNNNNNNNNN 1202 37 100.0 36 ..................................... GCATTGACAAATAGGCAGCCAGAGATCTCGCTACAG 1129 37 100.0 38 ..................................... GGCGACAGTTACTTGATCTCCTTGTGTGTAAATCATCA 1054 37 100.0 38 ..................................... CCTTATCCACTTGATTATCGCCACGACTGTCCGGGTTG 979 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.4 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCACAGATTGCCCGGTTTTTGTTTGCGATCGCGACCATGAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGGTAGCCATCCTCCGAGAATTCTGAAATAANNNNNNNNNNCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCGGCTGCTGCGCTATCTTCTCTATCCAGTCGGGGTTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATTACGGTGGCTCCCGGTTCGATCGCGGTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACTTCGGACTCAACCTTCCTCAGCCAGGATTG # Right flank : AGATGAGTGCTACCGGATAGTGCTAGAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGAAGGAAGGGTGGCAATTTTCCTATGTGAAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCTCTCAGCTAGCGCCTCTTCTCCATCTTCTAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAACTTTCTCTCCTCTTTTTCATCTGCTATGATGAGTTGCAACTTAAATTAATCCCTATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 2401-2208 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000028.1 Fischerella thermalis WC442 NODE_50_length_2697_cov_31.487949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2400 37 97.3 43 ..........A.......................... CTGGTAGCCATCCTCCGAGAATTCTGAAATAANNNNNNNNNNC 2320 37 100.0 39 ..................................... TTCGGCTGCTGCGCTATCTTCTCTATCCAGTCGGGGTTT 2244 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 99.1 42 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTACCCCTCCCCAGATGCCACTGGAGCTTGCGGATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACGCGACGACCTTATTGTTGACGATTCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCTCTCTGGTCGGAGAATACTGCACAGATNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCACAGATTGCCCGGTTTTTGTTTGCGATCGCGACCATGAA # Right flank : GATTACGGTGGCTCCCGGTTCGATCGCGGTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACTTCGGACTCAACCTTCCTCAGCCAGGATTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGAGGAAAGACTTGACCTCTTTATCCGAGCAGAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAAGCTCAGCCAGGCTCCTAGCCGCTCTGATACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACGCCCAATCCGGCTTCATTTATCCCTATCTCTATCGTTGCAACTTAAATTAAT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 2-1191 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000185.1 Fischerella thermalis WC442 NODE_1195_length_1933_cov_32.141232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2 37 100.0 37 ..................................... GCTTCAATCGCGTGCCACTCTAATAGCGATCGCTCCC 76 37 100.0 33 ..................................... CTGGGTGGCGGGCTTGGCGAAGGTGATGCTTCC 146 37 100.0 31 ..................................... CAGTATCCTCTCCCCGAAGAAAACTGCACAC 214 37 100.0 34 ..................................... GAATGTGGAAGCAAATGGGAAAGACTACACAAGT 285 37 100.0 33 ..................................... CCGCTGCCACTAGAAGCTAGATATTTGGCAAGA 355 37 100.0 33 ..................................... AACCGGAGCGATCGCCCCCAAAGAGCGATCGCT 425 37 100.0 36 ..................................... GGGGCTTGAATCTTCGTCGGGGGAGGTAATCTTCTC 498 37 100.0 33 ..................................... TGACCCAGGATGTACCAAACACTCCGACGCTCC 568 37 100.0 35 ..................................... GTTGCCGGAGCAAGAAGGACAAGTCATGGCTCACC 640 37 100.0 43 ..................................... GNNNNNNNNNNCCCACATCGAACACGGTACCCTCGCCTATCTC 720 37 100.0 33 ..................................... GAAAGACTCTCCGGCAAGGGCATTTCATTAGTC 790 37 100.0 35 ..................................... AGCAGCCCAGCATCCCGGAATACTTCTAGGATCTG 862 37 100.0 34 ..................................... CGCGTTAAACCGCGAGGGGGATGGGTCTAGAAAT 933 37 100.0 33 ..................................... GCAGGCTTGAGCCTGATTCAGCAGGCATGTCGA 1003 37 97.3 43 ....................................N NNNNNNNNNCACCACAACTCCTTCGACCCACCTCGCCCCATAG 1083 37 100.0 35 ..................................... GCAACCACCATGGAATCTCTCCACAAGTTTGAAGC 1155 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 17 37 99.8 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AG # Right flank : CGCANNNNNNNNNNAACTTCTCGAATTCCTGAGCAAGCTCCTCGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAGGGCTTAGGCACTGTCAGAGCCTCATCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAACTGAACAAATAGAGAGGGGTGCCGGCGAATAGCGTTGAAATCAACTAAAATCCCTATCAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 1591-1770 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000185.1 Fischerella thermalis WC442 NODE_1195_length_1933_cov_32.141232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1591 37 100.0 35 ..................................... AACTGAACAAATAGAGAGGGGTGCCGGCGAATAGC 1663 37 100.0 34 ..................................... ACGACCCCAACTCCTTCGCGAGCGAGTAGCCCAG 1734 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 98.2 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CAACTAAAATCCCTATCAGGGATTGAAACGCAACCACCATGGAATCTCTCCACAAGTTTGAAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCANNNNNNNNNNAACTTCTCGAATTCCTGAGCAAGCTCCTCGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAGGGCTTAGGCACTGTCAGAGCCTCATCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCATCCAGCACCGAGGAAAAGGAAAGCGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNCAGGCTATATAGCCCACCTCTCCTACCGCAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1-991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000038.1 Fischerella thermalis WC442 NODE_65_length_951_cov_34.958992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1 37 100.0 34 ..................................... GCGATCGTAGGCGGCGTAGATCTCCAGTTCCGGC 72 37 100.0 39 ..................................... GAAAGAGCTGAGCGAAGATTTGGGACAATCCCAGCAGAA 148 37 100.0 33 ..................................... GTGCCTTTCCCGCTTCCCGTCTTTGTGATGATG 218 37 100.0 34 ..................................... TCCTACGGAAATCTCTGGATGAGCGGTCGAGCTA 289 37 100.0 36 ..................................... AAAACTACCACCGGGTGCTTCCTTTTTGAGTTGCGT 362 37 100.0 34 ..................................... ATCGGCAGATCCCTTCCCCCTGCCAATGACACCT 433 37 100.0 42 ..................................... GAAGCCATCTTCCTGCCATTCGATACGGATGGTCGATTGCAG 512 37 100.0 38 ..................................... NNNNNNNNNNCTGGAGATGGAGTACATCTCCGGTGGCG 587 37 100.0 34 ..................................... CCATTGTGGGTGGCACGCGATTTCTCTAATAGGG 658 37 100.0 34 ..................................... GTTGCAAGCGATCGCCTTGGCGAGGGAACCGAGT 729 37 100.0 40 ..................................... TTCCGAAGAGACTATGTCGGCGACTCTTTTCGCCAGGGAA 806 37 100.0 35 ..................................... TTGGCTTCTGAGGTAGTGGAATAGGTCAAGGAACT 878 37 100.0 40 ..................................... GCCTCCATACCACGTAGTGCCCACCAGCAGCGGGCACCGC 955 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000178.1 Fischerella thermalis WC442 NODE_843_length_1167_cov_29.722364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1 37 100.0 34 ..................................... AGCCAGCACCTGATTCTTCCCAAATCGGGAAGAT 72 37 100.0 35 ..................................... TAACAACAACGAAGAAACCGCATCCAACACCCCAG 144 37 100.0 34 ..................................... AGAATCTCTGGCACCCGATGGATTTAGCGAGTGG 215 37 100.0 33 ..................................... TAATACATCATTCAGTGAACCACCTTTAAGAAT 285 37 100.0 34 ..................................... ATGTTAGATGACATCCGCACATCTAGACCAAACA 356 37 100.0 43 ..................................... AGNNNNNNNNNNACAATGTTTGCTGCCTTTTCTGCTAGTTCCC 436 37 100.0 35 ..................................... AAAGTATCAGAGCCAAAACAAATGTAAACTGTACG 508 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACCATGACTTTAAAAAATTCAAAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGAGAATTGTGTGCGAACCTTAATATTCTTCCATCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 73910-73646 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000179.1 Fischerella thermalis WC442 NODE_878_length_74952_cov_43.896652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 73909 37 100.0 33 ..................................... CGATAAGTTCTATAGTGTCCCAGAGTTCCCGGT 73839 37 100.0 47 ..................................... AACTCAGTGCTTCTTACTGATGCCCAAGATGTTCANNNNNNNNNNGG 73755 37 100.0 36 ..................................... TCGGACGGAAACTTAGCACGACTCAGGATGCTGTTG 73682 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =============================================== ================== 4 37 99.3 39 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACTCATTCCGGACTCTTCTGATTGCCTCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGTCTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 74269-74084 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000179.1 Fischerella thermalis WC442 NODE_878_length_74952_cov_43.896652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 74268 37 100.0 37 ..................................... TTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAG 74194 37 100.0 37 ..................................... ACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCA 74120 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAATCTCCTCGGCTCCCCGCCGAATGGTACCCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGCGCTCCCTTGGATTTGGGCGTAGTACACNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGGTATTTTAGAAGTGACTTCAGGATCTTCAAGGTAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTCGGCGATGCGATTTTGTTGGAGTTGTAAAGAATTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCAGGAGGATCACCTCCTGGAGGATCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACTCATTCCGGACTCTTCTGATTGCCTCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATAAGTTCTATAGTGTCCCAGAGTTCCCGGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAACTCAGTGCTTCTTACTGATGCCCAAGATGTTCANNNNNNNNNNGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCGGACGGAAACTTAGCACGACTCAGGATGCTGTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAATCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 74993-74439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000179.1 Fischerella thermalis WC442 NODE_878_length_74952_cov_43.896652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 74992 37 97.3 36 ..........A.......................... TTCATATAAGGGCAAGCTTGGAGACGTGATAGTAGT 74919 37 97.3 34 ..........A.......................... AATCTCAGCAATGGAGTGGGGACATCGACTCCAA 74848 37 97.3 41 ..........A.......................... GGAGTGCGAAAGTAAAAGAAATAAAGAAGAANNNNNNNNNN 74770 37 100.0 33 ..................................... GAATCTCCTCGGCTCCCCGCCGAATGGTACCCG 74700 37 100.0 40 ..................................... GGCGCTCCCTTGGATTTGGGCGTAGTACACNNNNNNNNNN 74623 37 100.0 37 ..................................... GAGGTATTTTAGAAGTGACTTCAGGATCTTCAAGGTA 74549 37 100.0 37 ..................................... GCTCGGCGATGCGATTTTGTTGGAGTTGTAAAGAATT 74475 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 99.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : TCCAGGAGGATCACCTCCTGGAGGATCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACTCATTCCGGACTCTTCTGATTGCCTCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 257-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 256 38 97.4 37 N..................................... GGGACTCGCGTAGTCCCGGAAACGAACAAAATCGCCT 181 38 100.0 32 ...................................... TGATGCCTGGATGTGGGCTGCCNNNNNNNNNN 111 38 100.0 36 ...................................... CGATAATCCCCGCCGATGATAGAGAGGCGATCGCGC 37 37 97.4 0 .....................................- | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 98.7 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACC # Left flank : TCCCTATCAGGGATTGAAACAGGCAGCCACCGCAACAGGCACAGCAACTCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGGCACCCGTGGGCAGAAGAAGATCTCCGGCTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTCACGATCCACGTAACCCTCCCCTCGACCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCGAATAGCGATTGGCGTAGGGAAGAGCGATCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAATAGACCCATCCATCGACTTGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 852-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 851 37 100.0 41 ..................................... TTCACGCTGGTCAAATCCAAGAGCGCACTCTACGATCTCAC 773 37 100.0 31 ..................................... AGGCAGCCACCGCAACAGGCACAGCAACTCT 705 37 100.0 35 ..................................... CCGGCACCCGTGGGCAGAAGAAGATCTCCGGCTGG 633 37 100.0 33 ..................................... GGTCACGATCCACGTAACCCTCCCCTCGACCAA 563 37 100.0 34 ..................................... ATCGAATAGCGATTGGCGTAGGGAAGAGCGATCG 492 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAACCGAGGCATCTTCGCCGACGAAGCCGCCTTNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCGGTCTCGGAAGAGATGATCAGCACTTGTTCCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGAGAGACCGATTCCCCTCGGAGATGCAATACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCGTCGTAGTCGAAGGGCACCGCTGGGTAGGAGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTATCTTGGCGAAGACACGTTAGAACGGATCGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGTTCGCCGCAGATGTGGGTGCGAATGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGAATAGACCCATCCATCGACTTGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGGGACTCGCGTAGTCCCGGAAACGAACAAAATCGCCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTGATGCCTGGATGTGGGCTGCCNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGATAATCCCCGCCGATGATAGAGAGGCGATCGCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 1385-989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1384 37 100.0 37 ..................................... CGAGGCATCTTCGCCGACGAAGCCGCCTTNNNNNNNN 1310 37 94.6 35 NN................................... ATCGGTCTCGGAAGAGATGATCAGCACTTGTTCCG 1238 37 100.0 33 ..................................... AGAGAGACCGATTCCCCTCGGAGATGCAATACT 1168 37 100.0 35 ..................................... TTCGTCGTAGTCGAAGGGCACCGCTGGGTAGGAGG 1096 37 100.0 34 ..................................... CTATCTTGGCGAAGACACGTTAGAACGGATCGAA 1025 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.1 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CTCCGGAGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAAGACACTCTGGCGATCAACCGCGATCGCTGGCTGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCTGGCTGCTTTTCGCATGGAGCGATCGCGCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCGATCGCTGGCTGGCGATGATGAGGCGATCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTACATGTCGCAGTATCTGTCTGCGTCAAGNNNNNNNNNNGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGTGTGTAGCGCGATCGCACGCGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTTCGCCGCAGATGTGGGTGCGAATGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCACGCTGGTCAAATCCAAGAGCGCACTCTACGATCTCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGCAGCCACCGCAACAGGCACAGCAACTCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGGCACCCGTGGGCAGAAGAAGATCTCCGGCTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTCACGATCCACGTAACCCTCCCCTCGACCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCGAATAGCGATTGGCGTAGGGAAGAGCGATCGGTTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 4 2247-1626 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2246 36 97.2 45 N................................... CTTGCAGACCGAGAGTATTGCCTCTTGGCAATGCCGAAACTCGTG 2165 36 100.0 36 .................................... TTGATCCTTCCCGGCTCGTGGCGCATCCGGTGGATG 2093 36 100.0 39 .................................... TTTTAGAGAGAGCGATCGCACCTACTCATNNNNNNNNNN 2018 36 100.0 35 .................................... TTCGGGGATCAGGGATTCTTCCTTGGGCTGAGGAG 1947 36 100.0 38 .................................... TTTCTTTTTGGAGCGATCGCCCCTTATCTCCGGAGCGG 1873 36 100.0 37 .................................... GAAGACACTCTGGCGATCAACCGCGATCGCTGGCTGG 1800 36 100.0 33 .................................... TCTGGCTGCTTTTCGCATGGAGCGATCGCGCTG 1731 36 100.0 34 .................................... GCGATCGCTGGCTGGCGATGATGAGGCGATCGCG 1661 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 99.7 37 TTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ATCCCTATCAGGGATTGAAACGAGGTGCGATCGCGCATGAACTTCCACAGGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCTGGGTGCCATTCGGTGGGGAGCCGGAGAGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTATCCCCGCCGCCAAGCTCTGCGCGGGGAACAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCAGGCAAGTCAACGCCACGTGTCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGTATTCTAGGGGGAACTAAACGCGATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTACATGTCGCAGTATCTGTCTGCGTCAAGNNNNNNNNNNGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGTGTGTAGCGCGATCGCACGCGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGAGGCATCTTCGCCGACGAAGCCGCCTTNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCGGTCTCGGAAGAGATGATCAGCACTTGTTCCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGAGAGACCGATTCCCCTCGGAGATGCAATACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCGTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 5 3462-2987 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3461 37 100.0 34 ..................................... GACGACAAAAATCCTCAGAGATTCTTGCTGGTAG 3390 37 100.0 34 ..................................... TTTTCTCCCTTCGACTGGTATGTACGAGAGGGAT 3319 37 100.0 40 ..................................... CGCCACTTGCAGCTGCCCACCGAGGTAGGCGACNNNNNNN 3242 37 91.9 34 NNN.................................. GGCGGTAAGGTATGGAGCGATCGCAAAGATCTGG 3171 37 100.0 36 ..................................... TTTCAGACCGAGCAAGACCCACCTCTCGGAGAGTAC 3098 37 100.0 38 ..................................... TGAGGCGACCCCAGATGCTGGAGAGCCGCGCGCATCTA 3023 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.8 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCTATCAGGGATTGAAACTCCCGGGTTTTCCCTGATCCGACACTCCTACTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGATTGCGCCGCGCCTCACACTCGGCTTCTTCGCTTAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACGATCCAAGCTCCGCCGGGAGTCCCCCTCGAGGGAGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGAGAGAATGAAAGGGATTTCCGAGCAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTGCCGTCACGGCGACCGACGGAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACTCCGGGATGCCCTGAACCGGAGACTGTAGGACGCGCCCAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGTGCGATCGCGCATGAACTTCCACAGGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCTGGGTGCCATTCGGTGGGGAGCCGGAGAGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTATCCCCGCCGCCAAGCTCTGCGCGGGGAACAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCAGGCAAGTCAACGCCACGTGTCTCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 6 23136-23779 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 23136 37 100.0 37 ..................................... CGGGTTCGCCAGCCAGCCAAATCAGCGACAGGATGTC 23210 37 97.3 39 ....................................N NNNNNNNNNGCCGGCACCCATGCCGGCATCGACGACATG 23286 37 100.0 35 ..................................... AAGATTTCCTGGAGCTACTGATTCGGATGGATTAT 23358 37 100.0 46 ..................................... ANNNNNNNNNNGCGACCATAGAATTGATGGTGAATCCAGTGCTGGG 23441 37 100.0 36 ..................................... GGGCATCACGGGAGTGAACTGCACGATCCTCTCCGA 23514 37 100.0 47 ..................................... NNNNNNNNNNCACGAAGATTCTCAGTGCCTCTTGCTGATAGTCCCAG 23598 37 100.0 35 ..................................... GTAATCGTGGAGCAGCAGGGTGCCCTCTATCTGCT 23670 37 100.0 36 ..................................... ANNNNNNNNNNCTTGATCCCTAGAGGCAGAGCGGCG 23743 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 9 37 99.7 39 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : CGGCTGATGTAACACGGAACGCGACGGCGGCAATAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCATCGCCGATGGCTGCGATCGTCCAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCACTCGTAGCAACCAGATTCATGTTCAGAGACTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCANNNNNNNNNNGGAAATGATTAATATTTGCTCCTCCCCGACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATATGATAGATATGTCCACTAACCTCGGAGAAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 7 24016-25811 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================== ================== 24016 37 100.0 34 ..................................... CACTCGTAGCAACCAGATTCATGTTCAGAGACTA 24087 37 100.0 43 ..................................... CCANNNNNNNNNNGGAAATGATTAATATTTGCTCCTCCCCGAC 24167 37 100.0 33 ..................................... ATATGATAGATATGTCCACTAACCTCGGAGAAG 24237 37 100.0 41 ..................................... ATCGCAGCCCACGGCATCGCCCCCATTATCACCTCGGCTAA 24315 37 100.0 37 ..................................... GCGATCGCGATCGCTGGTGTGTACATGGGGCATGTCA 24389 37 100.0 40 ..................................... GGTGATAGAGCAGAATGTCTGGGCTTCCTCGAATGCGAGG 24466 37 97.3 84 ....................................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGGGGCTGCCAGATGTATCGTAGCCGAGA 24587 37 100.0 34 ..................................... GGACTTCCTATACAGAGACACGAATCTCTCCATG 24658 37 100.0 34 ..................................... CTTCTAGGAATTTTTTTGCTTCCTTGAATGATTG 24729 37 100.0 36 ..................................... GCTGATTTGGGGGTTGCCTACAAGAACTTTTTCGAC 24802 37 97.3 42 ....................................N NNNNNNNNNTAATAGGCGCAAAAAAAGAGCGATCGCTCTTAG 24881 37 100.0 40 ..................................... ATCGGCAGAACCTTTGCCCCTGCCAATGACCCCTCCAGTG 24958 37 100.0 33 ..................................... CAAGAGCCGAACCCACGCCCATCTCTCGCATCA 25028 37 100.0 34 ..................................... ATTAATAGGTAGCGGATCCCGGCAGCCCGACAGT 25099 37 100.0 40 ..................................... NNNNNNNNNNCCCAGTGCCATGCGATCGCGGCGAGGATGC 25176 37 100.0 38 ..................................... TGTACATACCTACTCTAGCACTCCCGCTCCCATGTGTC 25251 37 97.3 46 ....................................N NNNNNNNNNTATCGCTTCATAAAAAAAATGGCTCCCATCGGAGCCG 25334 37 100.0 35 ..................................... TTGGAGCGCGATCGCTAGCTGGGATGGGGAGAATA 25406 37 100.0 35 ..................................... TCGATGCTCACACGGGCACTCCCCCGCTACGGAGA 25478 37 91.9 37 ..................................NNN NNNNNNNGCATCCCCGGCGGGGACGGTACGGTCAACT 25552 37 100.0 39 ..................................... GGCATGGATCTGTTGGATCGAATCTGGATCAATACTTAG 25628 37 94.6 40 ...................................NN NNNNNNNNCATTTGGAAGATATAGACCTATAGGAATCCAA 25705 37 100.0 33 ..................................... GGAGCCTGCCACATCCGGGAACGGATCTTTATT 25775 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================================================== ================== 24 37 99.1 40 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNCACGAAGATTCTCAGTGCCTCTTGCTGATAGTCCCAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTAATCGTGGAGCAGCAGGGTGCCCTCTATCTGCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACANNNNNNNNNNCTTGATCCCTAGAGGCAGAGCGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCTGATGTAACACGGAACGCGACGGCGGCAATAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCATCGCCGATGGCTGCGATCGTCCAG # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGATCGCGCGCGATCGCCAGACTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTGGAAGCTAAGGAGGGATATAGCCGAGGCATATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTTCGGAGCGTGCCGGAGACATACTCTGCGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 8 25969-26148 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 25969 37 100.0 34 ..................................... GTGGAAGCTAAGGAGGGATATAGCCGAGGCATAT 26040 37 100.0 35 ..................................... CTCTTCGGAGCGTGCCGGAGACATACTCTGCGAGA 26112 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 98.2 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CTACGGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGANNNNNNNNNNGCATCCCCGGCGGGGACGGTACGGTCAACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCATGGATCTGTTGGATCGAATCTGGATCAATACTTAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNCATTTGGAAGATATAGACCTATAGGAATCCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGCCTGCCACATCCGGGAACGGATCTTTATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGATCGCGCGCGATCGCCAGACTCGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGGGCACCTTCGACGGCACGAACTATCCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCATCTTCTCCCGGAAGCCGGATAGTCCCGACTTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNTGGCATGAGTTGCATTCCCATCTCCTGACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGNNNNNNNNNNCCTTCTCCGGCATCTATGCGATCGCCGATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTATGCATTGATGCCTAGCCCCAACAGCATCCC # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 9 26352-27441 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 26352 37 100.0 35 ..................................... CATCTTCTCCCGGAAGCCGGATAGTCCCGACTTGC 26424 37 94.6 37 ...................................NN NNNNNNNNTGGCATGAGTTGCATTCCCATCTCCTGAC 26498 37 100.0 42 ..................................... CGNNNNNNNNNNCCTTCTCCGGCATCTATGCGATCGCCGATT 26577 37 100.0 42 ..................................... GGTATGCATTGATGCCTAGCCCCAACAGCATCCCCAAGACCC 26656 37 100.0 37 ..................................... TAGCTCGCCTCCAAAGCCGGCGCTTAAGCACGGCACT 26730 37 100.0 32 ..................................... CCACCAAAAATCGCGTGCCACTCGGAACGCAA 26799 37 100.0 41 ..................................... CGGAGTGAAAGCAGCTATGAAAAATATTGTAGACCAGATGT 26877 37 100.0 34 ..................................... CGATCGCTTCCATGCACCCACCCACCCCAGTACT 26948 37 100.0 43 ..................................... CTGCTTCGTTCTTGATCTTCCCATTGTCAGCGTACTTCCTAAG 27028 37 100.0 33 ..................................... GCCGATGGCTGCGATCGACCAGCCATCGCGGAG 27098 37 100.0 34 ..................................... GCCACCTCCACCTCCGCCTCCGACAACAAACATC 27169 37 100.0 50 ..................................... NNNNNNNNNNNNNNNNNNNNTAGGCTTGATAACGACATCCACATTAACCT 27256 37 100.0 41 ..................................... NNNNNNNNNNCGTACTGATAACCGATACTTTTTTGCTGCTT 27334 37 100.0 34 ..................................... GGCGATCGCCTCATACGCGCCGATCGGAAGACCC 27405 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 15 37 99.6 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGATCGCGCGCGATCGCCAGACTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTGGAAGCTAAGGAGGGATATAGCCGAGGCATATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTTCGGAGCGTGCCGGAGACATACTCTGCGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGGGCACCTTCGACGGCACGAACTATCCG # Right flank : CCTTGCCCGATGCCCGCCTCGTGCTTTTCTTCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTCTTTAGGATCAACAAGTCTAGATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNGGGGAGATCGAACTCCCCAGACGAATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATACATCTATCATATAGATTCCTGACAAATCTGCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 10 27709-27890 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 27709 36 100.0 37 .................................... NNNNNNNNNNGGGGAGATCGAACTCCCCAGACGAATC 27782 36 100.0 37 .................................... CGATACATCTATCATATAGATTCCTGACAAATCTGCC 27855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Left flank : NNNNNNNNNNNNNNNNNTAGGCTTGATAACGACATCCACATTAACCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNCGTACTGATAACCGATACTTTTTTGCTGCTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGATCGCCTCATACGCGCCGATCGGAAGACCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTTGCCCGATGCCCGCCTCGTGCTTTTCTTCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTCTTTAGGATCAACAAGTCTAGATT # Right flank : ACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATATGTAACTCCTGTGTCTGCGACAACCCCCTCCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGAGAAGCGCCAGAATGGGTGCAGATACCGATGGAATGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTATCCCAGAAAATTCCAAAAAATCTTATTGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAGTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 11 28100-28283 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000187.1 Fischerella thermalis WC442 NODE_1463_length_36672_cov_39.844242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 28100 37 100.0 40 ..................................... AGAGAAGCGCCAGAATGGGTGCAGATACCGATGGAATGCG 28177 37 100.0 33 ..................................... CTATCCCAGAAAATTCCAAAAAATCTTATTGCG 28247 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 99.1 37 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTCTTTAGGATCAACAAGTCTAGATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNGGGGAGATCGAACTCCCCAGACGAATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATACATCTATCATATAGATTCCTGACAAATCTGCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATATGTAACTCCTGTGTCTGCGACAACCCCCTCCA # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 39216-38960 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 39215 36 100.0 36 .................................... CACAGTGTATTTGGTTGCACATTCCCCCAACCAAGT 39143 36 97.2 36 ...................................C CATCTTCCGTTGCCGATCAAGGCAATAGACCACCGT 39071 36 100.0 40 .................................... AAAAGTCCCTGGATTCTATTAAGGAACAAGNNNNNNNNNN 38995 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 99.3 38 TGCAACTTAAATTAATCCCTATTAGGGATTGAAACA # Left flank : GCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGCCACTTTATGTGCTGAGTATCCAGCCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCAGACCCCCAACCAGGACAGGAGCCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACTGGATCCGCTTCACAAATACATCGACGCGATCGCCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTAGTTATGGGGGCGATCGCGCTTTTCTTTTCTTTTGGAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTCTCACGTAGCTTTTCCCTGACCGCGTCGAANNNNNNNNNNGT # Right flank : AAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAGAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTAAATTAATCCCTATTAGGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 2 39862-39614 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 39861 37 100.0 35 ..................................... GCCAAGGTTTGGCAGATCCTCTCCTAGGAAGGCTT 39789 37 100.0 34 ..................................... CCGTCTTCGGTCACCCAGCAAGAATCAGAAAGCA 39718 37 100.0 31 ..................................... CTGCCACTTTATGTGCTGAGTATCCAGCCGG 39650 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 34 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGAAACATGGATCCACAGCCATACAATCCACCAACAATCNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCATAGAGATCGGGGTCTTTGACCCGGACGCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGCAACGCCCAACCGCGCCTGGTGGTAGCCCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAACCCGCCTTGCTCGATAGACTCCAGAACCCCTTCGNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTAAAGGGCATCTTTATAGCGTGTCGTCACGCTATGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCTGGCTTATAAGAAAAGTGCAATATTTTGATTGGATGGAANNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCATGGACAATCAATCATCATCATCCCAAAAGAA # Right flank : CCAGACCCCCAACCAGGACAGGAGCCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACTGGATCCGCTTCACAAATACATCGACGCGATCGCCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTAGTTATGGGGGCGATCGCGCTTTTCTTTTCTTTTGGAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTCTCACGTAGCTTTTCCCTGACCGCGTCGAANNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACACAGTGTATTTGGTTGCACATTCCCCCAACCAAGTTGCAACTTAAATTAATCCCTATTAGGGATT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 41202-40135 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 41201 37 97.3 103 ..........C.......................... CCAAAAAGTTCGCGCAGCGTGCCGGAACGGGCGGGGACAAAGCGCGATTCGGCAGGGACAAAGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGATC 41061 37 97.3 38 ..........C.......................... TTGCCCGCTTTTTAGAGAGTCGAGGGAGNNNNNNNNNN 40986 37 100.0 34 ..................................... ATACCATCCCGACACCGTACCCTCAGATCCTCCA 40915 37 100.0 45 ..................................... GATATACATGTGCTATACTGACTATATACCAAGGANNNNNNNNNN 40833 37 100.0 35 ..................................... TCTGTTATGGGCGATCGCGCTTCCAATTATTCCGG 40761 37 100.0 41 ..................................... TTTTTATTAACGAAGGACGTCTTGTTCGCAACCATATTAAA 40683 37 100.0 40 ..................................... GAACGCAAAATCGCCAAAGAGTACAAGCTGNNNNNNNNNN 40606 37 100.0 34 ..................................... TGCTTAGGAGCAAAGTTTGGGGAGAGTGTTTCTG 40535 37 100.0 33 ..................................... AATATCATGCCTGGGATGTATCGCGATCGCGTG 40465 37 100.0 36 ..................................... TTCGTATCCCAAGATGCATTGTGTAACTCAAGTTTA 40392 37 100.0 42 ..................................... ATGGATCCACAGCCATACAATCCACCAACAATCNNNNNNNNN 40313 37 97.3 35 N.................................... CCATAGAGATCGGGGTCTTTGACCCGGACGCGATC 40241 37 100.0 33 ..................................... AAGCAACGCCCAACCGCGCCTGGTGGTAGCCCT 40171 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 14 37 99.4 42 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGCTTCTAATTCATGCGGAAGTATAGGGGAATTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTACTGCATTGTATTTTTCTTTGTTAGTTGTNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGGTGGTGGCGATCGCTCCCCTACCTATTCTCCGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCTCTTTCTCGTAGTATCTCAGAACCGACTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCACCTCCCTACGCCGAGATCTTTATCGATCTGGCACAAG # Right flank : AACCCGCCTTGCTCGATAGACTCCAGAACCCCTTCGNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTAAAGGGCATCTTTATAGCGTGTCGTCACGCTATGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCTGGCTTATAAGAAAAGTGCAATATTTTGATTGGATGGAANNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCATGGACAATCAATCATCATCATCCCAAAAGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCAAGGTTTGGCAGATCCTCTCCTAGGAAGGCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGTCTTCGGTCACCCAGCAAGAATCAGAAAGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGCCACTTTATGTGCTGAGTATCCAGCCGGGTTGCAACTTCAATTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 4 42718-42534 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 42717 35 100.0 36 ................................... TATGTCAATGACCTCGATCGTTCTTAGCTCTGCCGT 42646 35 100.0 43 ................................... CATACTCTGCATCGAGAACCCCGATGGGCTGCGNNNNNNNNNN 42568 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 3 35 100.0 40 TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAGCAGAGCGATCGCCGACCCGGATCTCAATCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGATTTTCGGGATCCTGCGCAATCCCGTAGACAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTTACAGACTGCACACTGCCCTAGTTGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGACGATCGCTAGCCTGTGCCCATTATCCTTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCTTATTTGTTTCTAGGTCATACAGATATGGGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACATCTACTGTGGGTAGATCTTCCAAGCCGGANNNNNNNNNNT # Right flank : CCATTTTGTAGGCTGGAATACATTTAGAAAAATCGCGNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATTTGGATTTAGGTGAAATCAGTATCCTTCCTCAGGCGTTGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACTCTAAGTTTCCTGTGACGGTGCTAGGTATCCTNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTTACTACCCCCAATAGAGAAATCGACTCGATCNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATGATGCTTTAAATTCTGCTAGGCAGATAGCCAAAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTGTAATAACCCTTACTCTCCACTAATGGCANNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGCAATGATAGAAGTTAACCGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 5 44261-43397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 44260 37 100.0 34 ..................................... GGGGAAATGTCCTAACTCAGACTGGTAGTAGAGT 44189 37 100.0 46 ..................................... GCCCAACGATTCGCGTACGAGATCGACCCCCAATGNNNNNNNNNNA 44106 37 100.0 34 ..................................... CGCACCGACCCCACCTTTCAAGGTGCTGGCGATC 44035 37 100.0 36 ..................................... GGGTTTCTCCGGGCTTCGCACTCAGCCTCTTCGCTT 43962 37 100.0 41 ..................................... GGCGGGGAAATCGATGGAGGCGGGTGCTACCCTCTGGGCAT 43884 37 100.0 38 ..................................... TTTACAAAAATTGTAGCGATGATCGCGCTCACTCCACA 43809 37 100.0 42 ..................................... GAGGCGAGAGCGCAGGCATGAGAAGTCAGGAAGAAGATGAGA 43730 37 100.0 36 ..................................... TCCAGTCTGGCGATCTTTTGGATGTAGTCGGGATTT 43657 37 100.0 36 ..................................... TCGAGATCGAAATCGGGATCAATGAGTCTGGCTTGG 43584 37 100.0 42 ..................................... ACAGAATGAAGAAAACGCCATTTTGCTTGCAATGTCGGCATT 43505 37 100.0 35 ..................................... GGCATCATTATTAGAGGCGGGGAGCAGAGAAGAAG 43433 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 12 37 100.0 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGCTNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGTGGAAGGGGTAGTGGTGGAGAGATCCACCTACTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGGTGGAGGAGTCTGCGGTGGAGATGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTGCCATATGGAGCAACACCCCAGAGACCTACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCCGATTCGATCAAGCAAGCCCAAGCCTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGATGACGACTTCGTATTCCTCCCATTTGTCNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATAGGCTCAGGTGGCTGTGGCTCCGAGATCGCG # Right flank : GAAGAGATGTAGGAGCGTACGAGATTCCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAGCAGAGCGATCGCCGACCCGGATCTCAATCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGATTTTCGGGATCCTGCGCAATCCCGTAGACAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTTACAGACTGCACACTGCCCTAGTTGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 6 44547-44372 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 44546 37 97.3 33 N.................................... GGTGCCATATGGAGCAACACCCCAGAGACCTAC 44476 37 100.0 31 ..................................... TCCGATTCGATCAAGCAAGCCCAAGCCTCGG 44408 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 99.1 32 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TATGAGGCGCTGGTCTTCCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTCCTCCATCGCTCGCAGCACGTTCGCCTCGACGTAATNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATACCAGAACATCCGAGCGGGCACCAATGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTTTGTGGGGGCGATCGCTGGCGATCGCTNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGTGGAAGGGGTAGTGGTGGAGAGATCCACCTACTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGGTGGAGGAGTCTGCGGTGGAGATGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGATGACGACTTCGTATTCCTCCCATTTGTCNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATAGGCTCAGGTGGCTGTGGCTCCGAGATCGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGGAAATGTCCTAACTCAGACTGGTAGTAGAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCCAACGATTCGCGTACGAGATCGACCCCCAATGNNNNNNNNNNAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGCACCGACCCCACCTTTCAAGGTGCTGGCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGTTTCTCCGGGCTTCGCACTCAGCCTCTTCGCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCGGGGAAATCGATGGAGGCGGGTGCTACCCTCTGGGCATGTTGCAACTTAAA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 7 45163-44940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================================================================== ================== 45162 34 100.0 37 .................................. TGCGCTCTTGGCAAGGGCAAGAGCGATCGCGCCAGTT 45091 34 100.0 84 .................................. AACGCCTCGTCTATGAGGCGCTGGTCTTCCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 44973 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================================================================== ================== 3 34 100.0 61 GCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GAAACGAGTGCGAGAGCGCAAAGACCTGGAACTTNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGTCGACGAAGACGAAGTCGAGCCGGACTTGGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCGGCGCCTCCGCCCTTCATAGCAAGGAACNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGCAGGTATTTGAAACCCCTAATAGGATTACCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATGCGGGTGCTTAGGTCTGGCAGTGGGNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCGGATCTTCCCATTGGACGCAGACTCTGACAGCCTGCTCCAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGACCCATTTCCCCCGCAAGCGACCTAGCGCGNNNNNNNNNNTT # Right flank : GCTCCTCCATCGCTCGCAGCACGTTCGCCTCGACGTAATNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATACCAGAACATCCGAGCGGGCACCAATGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTTTGTGGGGGCGATCGCTGGCGATCGCTNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGTGGAAGGGGTAGTGGTGGAGAGATCCACCTACTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGGTGGAGGAGTCTGCGGTGGAGATGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTGCCATATGGAGCAACACCCCAGAGACCTACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-3, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 8 45618-45364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 45617 35 100.0 37 ................................... CCCGTCGACGAAGACGAAGTCGAGCCGGACTTGGCGT 45545 35 100.0 41 ................................... ATCGGCGCCTCCGCCCTTCATAGCAAGGAACNNNNNNNNNN 45469 35 100.0 36 ................................... AAGCAGGTATTTGAAACCCCTAATAGGATTACCGGT 45398 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 100.0 38 TGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GGGATTGAAACGGGATTCTGGAAGACTTAACGAAGAATGGGCAGGTATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCCATCGACCAAGAGGCGATCGCTCACCCACNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGCAGTAGCGGTACTTCTCCCAGAAAGAGGCTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGGTGAACTTGATGCTCGATGTAGAAGCGCTCCCGCGCTGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACCCCGATGGGCTTTCGGGGCGACAGATTATAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGAAGCTCCGGAGGTAGATACTGCCCGGCAAAGCAACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGTGCGAGAGCGCAAAGACCTGGAACTTNNNNNNNNNNT # Right flank : CATGCGGGTGCTTAGGTCTGGCAGTGGGNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCGGATCTTCCCATTGGACGCAGACTCTGACAGCCTGCTCCAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGACCCATTTCCCCCGCAAGCGACCTAGCGCGNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGCTCTTGGCAAGGGCAAGAGCGATCGCGCCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAACGCCTCGTCTATGAGGCGCTGGTCTTCCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTCCTCCATCGCTCGCAGCACGTTCGCCTCGACGTAATNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 9 46964-45658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 46963 37 100.0 39 ..................................... AATGCCGATTGGGTGAAGTCGATCGAGCGCNNNNNNNNN 46887 37 97.3 34 N.................................... GCCCCACGACCCCACGTGCTGCCCTCTTCGAGTT 46816 37 100.0 45 ..................................... CAAGTTCCGGTACCAACCTCTACCGTGTCCGGTGTNNNNNNNNNN 46734 37 100.0 38 ..................................... TGGTAGAGTCGCGGAACCTACCCTGCCAGCTACCAGAG 46659 37 100.0 36 ..................................... CTGTCCACTGCTCCGGCACGAAGCCTATCTGGCTGT 46586 37 100.0 36 ..................................... TCCGAGCAGGCACTCAAGCAAAGCGGGCTGNNNNNN 46513 37 89.2 33 NNNN................................. CTTCCGGCAATCGCGCGCGATCGCCGGACTCGG 46443 37 100.0 37 ..................................... AGCCAGATACTGAGTGAAGGCGAGTTGTTCGTGATGT 46369 37 100.0 36 ..................................... CTTCTTTACCAGGGATCCTTTTGTGTAGTCGGCTTT 46296 37 100.0 46 ..................................... TGGCGAAGGTGATGCTCCCTCCCACCACGCCTTCCANNNNNNNNNN 46213 37 100.0 33 ..................................... TTTATCCTTCCCGGCTCGTGGCGCATCCGGTGG 46143 37 100.0 38 ..................................... GGGATTCTGGAAGACTTAACGAAGAATGGGCAGGTATC 46068 37 100.0 42 ..................................... TGCCATCGACCAAGAGGCGATCGCTCACCCACNNNNNNNNNN 45989 37 100.0 35 ..................................... GAGCAGTAGCGGTACTTCTCCCAGAAAGAGGCTTC 45917 37 100.0 42 ..................................... CGGTGAACTTGATGCTCGATGTAGAAGCGCTCCCGCGCTGGA 45838 37 100.0 33 ..................................... ACCCCGATGGGCTTTCGGGGCGACAGATTATAG 45768 37 100.0 37 ..................................... GGAAGCTCCGGAGGTAGATACTGCCCGGCAAAGCAAC 45694 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 18 37 99.2 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTTCAATTAATCCCTATTAGGGATTGAAACTGCTACGGCTTTCATTATCTTTAGCAACACCTTGACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCGAAGCGTGCCGGACGGCATCTCGCGGATACCAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAACGCAGGATTGCTAAAGAGTACAAGCTGATTAGCGCAATCTTCGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTTGGCGGCTGAGGCGACCCCAGATGCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGGTGGTGCCGGCTTTGGCGACCACATCGCTCT # Right flank : GAGTGCGAGAGCGCAAAGACCTGGAACTTNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGTCGACGAAGACGAAGTCGAGCCGGACTTGGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCGGCGCCTCCGCCCTTCATAGCAAGGAACNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGCAGGTATTTGAAACCCCTAATAGGATTACCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATGCGGGTGCTTAGGTCTGGCAGTGGGNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCGGATCTTCCCATTGGACGCAGACTCTGACAGCCTGCTCCAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGACCCATTTCCCCCGCAAGCGACCTAGCGCGNNNNNNNNNNTTGCAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 10 47758-47201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000188.1 Fischerella thermalis WC442 NODE_1479_length_154466_cov_43.569595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 47757 37 100.0 35 ..................................... GCGGAGAGGGGAGAAATGCCTAGGGGCGAGGGAGA 47685 37 100.0 33 ..................................... GCACCTTCCTTGGCTCTCGGAATTTGTCGAAAA 47615 37 100.0 39 ..................................... TGTGCTACCCCACAGAGGTGGGCAATCAGTTTGGGATGT 47539 37 100.0 35 ..................................... GATCTTTCCCTTTGTCGCTCCTACCGTGATGGCGT 47467 37 100.0 36 ..................................... TGCTACGGCTTTCATTATCTTTAGCAACACCTTGAC 47394 37 100.0 36 ..................................... CGCGAAGCGTGCCGGACGGCATCTCGCGGATACCAG 47321 37 100.0 47 ..................................... GAACGCAGGATTGCTAAAGAGTACAAGCTGATTAGCGCAATCTTCGA 47237 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 8 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCCAAGTTAGCCTGGTTAGCCCAATTCAATNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCTGTGCGCGATCGCCCCCTCGCATCCAANNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGTCTCCCCGACTCCCCGCCGAATGGCACCC # Right flank : ATTTGGCGGCTGAGGCGACCCCAGATGCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGGTGGTGCCGGCTTTGGCGACCACATCGCTCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATGCCGATTGGGTGAAGTCGATCGAGCGCNNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCCCACGACCCCACGTGCTGCCCTCTTCGAGTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAAGTTCCGGTACCAACCTCTACCGTGTCCGGTGTNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1375-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000184.1 Fischerella thermalis WC442 NODE_1053_length_5361_cov_30.615183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1374 37 100.0 34 ..................................... AAGTAGTGAAAGCGTTTAAAGGCAGGTCATCAAG 1303 37 100.0 42 ..................................... GTGCATCATCGTGGCACCTTTGATTAAAAAAGTTNNNNNNNN 1224 37 94.6 33 NN................................... TTTACTCTAACTCTACTTTACCACCTCGTCAAT 1154 37 100.0 34 ..................................... GCTCGCTTATCCCTCCGAGGCTGTCTTCTGTGGG 1083 37 100.0 40 ..................................... GAAAATGCATCCCATTTGACGGTTTATTGCTTCAGCCTGA 1006 37 100.0 36 ..................................... CTACCGCGTACTCCGGGAGTGTGGAGAATGCATTCT 933 37 100.0 40 ..................................... AGGAGGTCTTCATGAAGACTAAGTACAAAANNNNNNNNNN 856 37 100.0 41 ..................................... GTAGACCGCAGGGCGCAGGAGTTCCTCGAAGAGTGGAAGAA 778 37 100.0 38 ..................................... TTTCATCAGCATTGCACGTACATCCCTGANNNNNNNNN 703 37 97.3 33 N.................................... TAGGTAATCGACCAAATGCACCTTGTTCGGGTC 633 37 100.0 45 ..................................... GCTCCTTAGTTGAGATACCTTGCTGTTGATTTCTTTNNNNNNNNN 551 37 97.3 34 N.................................... GGCGCAGCTGGGAATCGCCAAGCTCTCGACCCTG 480 37 100.0 41 ..................................... CGCCGGCTAGCCAAATCAATGACAAGATGTCNNNNNNNNNN 402 37 100.0 36 ..................................... ATCTACCCCTCTTAGTCGCCAGAGCATACCTGATAG 329 37 100.0 39 ..................................... AGTATATTTGCGGCTTTGTTGGTCATCACGTACAGCAAA 253 37 100.0 37 ..................................... TGGAAGTGGTCGACGATCATGTAGCGGCGCTCGAACT 179 37 100.0 34 ..................................... CAAGCTCTGCCTTCGGCTTCGGGTCTGGCGTGCT 108 37 100.0 34 ..................................... CCGGATCCTGAGCCTGGGGATTGCGCGATCGCAG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.4 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ACTGCACAGATTTCTCCATATATATATAGGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGGTATCTTTTTGCCAAATTACATTTCTNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCAGAGCGATCGCAGTACCGCGATCGCCCCCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCTGAGTAACGCATCTATCATAGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCGGTATATAATTCTCCCAGCGGTCTCCCTGTTTNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 2646-1660 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000184.1 Fischerella thermalis WC442 NODE_1053_length_5361_cov_30.615183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2645 37 100.0 33 ..................................... GTGATCGAAGGCTGGGACGACCTCGCCATAGGA 2575 37 100.0 34 ..................................... CCCTTCCCTTTTTAAGCAGCTAGCTTTTCGATCC 2504 37 100.0 34 ..................................... ATAGGCGCATCAGCGCTCCACAGCAAGGAACGGG 2433 37 100.0 32 ..................................... GGGAGCCGCGACAATAACTTGCCCCTCCCAAT 2364 37 100.0 38 ..................................... TCGGTTCGGCGGCGCCGGCTTTGGCGACCACATAGCAC 2289 37 100.0 41 ..................................... TTCTCTCCCCAGAGGAATCTGCACACTTTTTCNNNNNNNNN 2211 37 97.3 33 N.................................... CAGATCAGCATACGTTCCGGTAGTTTGGGAAGT 2141 37 100.0 37 ..................................... ATCGCACCACGCATCCCTACTTGGATCCACGATAGGA 2067 37 100.0 36 ..................................... CAATCTCGCGATCTTTTGGATGTAGTCGGGGTTGCC 1994 37 100.0 38 ..................................... CTATCACCGACCTAGTATCGGAGGAAGANNNNNNNNNN 1919 37 100.0 40 ..................................... GGAAGAATACTGCACAGATTTCTCCATATATATATAGGAA 1842 37 100.0 39 ..................................... GAGGTATCTTTTTGCCAAATTACATTTCTNNNNNNNNNN 1766 37 100.0 33 ..................................... CCAGAGCGATCGCAGTACCGCGATCGCCCCCAC 1696 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.8 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGAAACCCACCGTCCCTGGCATGGATGTATGCCACCNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGATCGACTTCACCCATTCGGCATTTATCCCCGCGCCCNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCAGGGACGGGTGGCGATCTTCCTGCACGACGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACAGAGCTTGGCTCAGATGGCAATTCTCTAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACGACCGGGACACCTCCTCCATCCGTGAGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GGCTGAGTAACGCATCTATCATAGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCGGTATATAATTCTCCCAGCGGTCTCCCTGTTTNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGTAGTGAAAGCGTTTAAAGGCAGGTCATCAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGCATCATCGTGGCACCTTTGATTAAAAAAGTTNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTACTCTAACTCTACTTTACCACCTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 5400-2839 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000184.1 Fischerella thermalis WC442 NODE_1053_length_5361_cov_30.615183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 5399 36 100.0 42 .................................... CAATGCTAAAGAAATATCTAATCAGAGGCAGGNNNNNNNNNN 5321 36 100.0 38 .................................... CAGAAGCTCGCCTTTCGCTAGGAGAGTTTCTAAAAACG 5247 36 100.0 39 .................................... TCGATTGGGAGGCTAATCCAGGTACGGANNNNNNNNNNG 5172 36 100.0 34 .................................... ATTTATGAATCTTCGAGGTTTGGAGGAGTGCGAG 5102 36 100.0 38 .................................... GCCGGGATCTGGTGCCAGCTGCGCTCGATNNNNNNNNN 5028 36 94.4 44 N........C.......................... GGGCACATATATGCCGGGATCACCATCGTCCGTGNNNNNNNNNN 4948 36 100.0 34 .................................... TTGCCAGAAAGCACCCTTCCCCCCAACAGATCTG 4878 36 100.0 41 .................................... AATCCTTGCTGGGCGGTACATAGGCACGGGTGCGGTGGGCG 4801 36 100.0 38 .................................... TAGGATAGGTTAGAATTCCCTGTTGTATTGATTCCTCG 4727 36 100.0 36 .................................... GTACAGGTCGAGGAATTGGGATGTATTTCTGAATTG 4655 36 100.0 47 .................................... CACTGATACCGCAGATATACCTGCTGGGTGAGTGGCGNNNNNNNNNN 4572 36 97.2 40 .........C.......................... GGCGATCGCCGCATCGGCGACTGCTGACCCNNNNNNNNNN 4496 36 97.2 38 .........C.......................... TATGCGATCGCTCCAGACCGCGAAGACTTTGCAGAGCG 4422 36 97.2 48 .........C.......................... GGCTAGAAAAGTGTGTCCGAGCTTGGGTGTGGTGCCCNNNNNNNNNNG 4338 36 100.0 38 .................................... GCGGACATAGTCGCGACGGAGACCCCCACCAGCACGCG 4264 36 100.0 33 .................................... AGCGATCGCCAGGACTCCCATCGCGATGAATCG 4195 36 100.0 39 .................................... GGGCTTGGATGATGCTACGCTCCCGACACTCCCCGCTGG 4120 36 100.0 37 .................................... CCGGACTGGAGCCACGATAGGAAAGAAGAGATCCCGG 4047 36 100.0 35 .................................... CTATCGGATCCTGCAAGAATGCGGAGAGTGCATCG 3976 36 100.0 48 .................................... ATGCGTTTGCCCTTAGTCAGCCCAGCGACCTTCAGTTCNNNNNNNNNN 3892 36 97.2 34 .........C.......................... GAACTTCTTATCATCGGCGATCGCGGCACCACAG 3822 36 97.2 42 .........C.......................... TAGATGCGGTCTAGGGCGGAATCGATTACCNNNNNNNNNNTG 3744 36 100.0 84 .................................... CAGGTATCGCAGCACCCCCTGATTTCCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 3624 36 97.2 38 .........C.......................... GTTTCTGGATTGCGCCGAAAATGGTTGGATCTCCTGCG 3550 36 97.2 42 .........C.......................... TTTCAAGAACAAAAAGCTCTTCCGACACTTTNNNNNNNNNNG 3472 36 97.2 40 .........C.......................... TGGGGTGCGATCGCGGAGCAGATGTGGGGTNNNNNNNNNN 3396 36 100.0 34 .................................... CTGGATCATTTGTAAGTTGCCGCCAGCACTTGAG 3326 36 100.0 42 .................................... CACGGCTTGATCCAAGCCGTAGTTCTGAGCNNNNNNNNNNCG 3248 36 97.2 37 .........C.......................... CTGGAATGTATGGGGCTAAGCGGGAGGCTAGCTTTAG 3175 36 97.2 41 .........C.......................... CCACCGTCCCTGGCATGGATGTATGCCACCNNNNNNNNNNG 3098 36 100.0 49 .................................... CGATCGACTTCACCCATTCGGCATTTATCCCCGCGCCCNNNNNNNNNNG 3013 36 100.0 34 .................................... GCAGGGACGGGTGGCGATCTTCCTGCACGACGCG 2943 36 100.0 33 .................................... ACAGAGCTTGGCTCAGATGGCAATTCTCTAGAG 2874 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 34 36 99.0 41 TTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : A # Right flank : GACGACCGGGACACCTCCTCCATCCGTGAGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGATCGAAGGCTGGGACGACCTCGCCATAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCTTCCCTTTTTAAGCAGCTAGCTTTTCGATCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATAGGCGCATCAGCGCTCCACAGCAAGGAACGGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGAGCCGCGACAATAACTTGCCCCTCCCAATGTTGCAACTTAAATTAATCCCTATTA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 41771-42774 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAC01000131.1 Fischerella thermalis WC442 NODE_248_length_42734_cov_44.644524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 41771 37 100.0 34 ..................................... GGGCATCCCAGCACCGCCAGCCCCGACTCGTAGC 41842 37 100.0 34 ..................................... CCATTATTTGCTCGTTTCGGCATTAGTAATGACC 41913 37 100.0 33 ..................................... GCATCCCCATCTCCTGGCACACGCCCTGGCAGG 41983 37 100.0 39 ..................................... GCTCCGATGACTATGTCGTAGCTCTCCCATCTGTCCTTG 42059 37 94.6 42 ...................................NN NNNNNNNNAGTACGCCAGCTTCAGCTGCGCAGACAGGGGGCA 42138 37 100.0 37 ..................................... TCTGCTTTTTTGTTTGCGATCGCACCCATTGTGGAGT 42212 37 97.3 46 ....................................N NNNNNNNNNAGTGTTTCTTGTTCCCATAATGAATGGTCTCCTATCG 42295 37 100.0 34 ..................................... CGCACACACGCGCGCGTATATATGCAAAAAAATC 42366 37 100.0 42 ..................................... NNNNNNNNNNTGACAACTCTTTTAAAAAGCCTGAAACCCTTG 42445 37 100.0 34 ..................................... CCGCCCAAGAACCAGAGAAGACAAAGTCCTGACT 42516 37 100.0 35 ..................................... GAAAGGGGTGGGCGTGTGCGCGTCGCGACCACCAT 42588 37 100.0 40 ..................................... CGGAGGGCATACATCGGGGAATCGAGCCTGTCGCCATCCG 42665 37 100.0 36 ..................................... CTTCCGGGTGACTTCATCTAATGCCACCTCCAGCGA 42738 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 14 37 99.4 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGATGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGAACCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA //