Array 1 30216-29403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032223.1 Klebsiella pneumoniae strain AR_0046 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30215 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 30154 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30093 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 30032 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 29971 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 29910 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [29857] 29856 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 29795 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 29734 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 29673 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 29612 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 29552 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 29491 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 29430 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2792026-2789376 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032222.1 Klebsiella pneumoniae strain AR_0046 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2792025 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 2791964 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 2791903 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 2791842 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 2791780 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 2791719 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 2791658 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 2791597 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 2791536 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 2791475 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 2791414 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 2791353 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 2791292 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 2791231 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 2791170 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 2791109 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 2791048 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 2790987 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 2790926 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 2790865 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 2790804 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 2790743 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 2790682 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 2790621 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 2790560 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 2790499 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 2790438 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 2790377 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 2790316 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 2790255 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 2790194 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 2790133 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 2790072 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 2790011 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 2789950 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 2789889 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 2789828 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 2789767 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 2789706 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 2789645 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 2789584 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 2789523 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 2789462 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 2789404 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //