Array 1 1009721-1011030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057243.1 Escherichia fergusonii strain RHB32-C05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1009721 29 100.0 32 ............................. AATTGCCGACCCACAAAGAGTGCGCAGTACGC 1009782 29 100.0 32 ............................. ATCCCTCAGTTCATCACCTTCAAGAAGGAAAT 1009843 29 100.0 32 ............................. CAGCGGCCTCAACGCTTAAACCGCACCGCTTA 1009904 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 1009965 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 1010026 29 100.0 32 ............................. CCGAGGAAATCGACGCGCTGGCCCGGTCCGCG 1010087 29 100.0 32 ............................. GCTGAACCAATTGCCAAACCCTCACAGGATCC 1010148 29 100.0 32 ............................. TATTAAAGGACGATGTGCGCGGGCTATTTAAT 1010209 29 100.0 32 ............................. CCAGCCGAACGCAAACACGCATACGCTAAAAT 1010270 29 100.0 32 ............................. CTACAAAAAAACCATCAGGCAATTCAACGGCA 1010331 29 100.0 32 ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 1010392 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 1010453 29 100.0 32 ............................. TTTATACTGCGCCAACGATTCATCACGCCAGA 1010514 29 100.0 32 ............................. CACAAAACGGATCTTTCTATATGTCCAGTAAT 1010575 29 100.0 32 ............................. GCCTCTAACGCAGATCGCGTTTATTGCCGGGA 1010636 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 1010697 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 1010758 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 1010819 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 1010880 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 1010941 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 1011002 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1025989-1027847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057243.1 Escherichia fergusonii strain RHB32-C05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1025989 29 100.0 32 ............................. ATTCTCTATGATTCGTAAATTAATTATTGATA 1026050 29 100.0 32 ............................. TCATACGTTTGCCCGGAAACCGGATCAACAGT 1026111 29 100.0 32 ............................. AAATTGACCCTCGGGTGATTGTCGTGGGGATC 1026172 29 100.0 32 ............................. CGCTTCCTAAATTCAGGAAGCAATGTTTTATT 1026233 29 100.0 32 ............................. TTGGACCTGGCTGATTCAGTCTCTACGTTATC 1026294 29 100.0 32 ............................. CGGAGAGAGGGCTGGAATAGTGGTCGGAGTGT 1026355 29 100.0 32 ............................. ACGTGTATTCCCCGATTTCTTTAGTCGGTGTG 1026416 29 100.0 32 ............................. AATTTTCACGGGGATCGGGATTGTGGCGCAGA 1026477 29 100.0 32 ............................. CAACGTAACAAATTGATAATATTAAAAAACAC 1026538 29 100.0 32 ............................. GGCTAAAGGCGGCGAATTCGGCTGGGTTTTTG 1026599 29 96.6 32 ............................T TTGCCAGCGTGCCGTGATAACATCGGTACCGC 1026660 29 100.0 32 ............................. GTCACGATAGCTGCGCAAGTTCTTCTCGCCAG 1026721 29 100.0 32 ............................. ACGCTCTCTACAGCATTTCGCCGCCAGTTATT 1026782 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCGGCGCGCCCAT 1026843 29 100.0 32 ............................. CAGCGCTTGTAGTTGCCGATAAAATCACTGAA 1026904 29 100.0 32 ............................. AAAAAACGCTGGCTACAACAGTGTCGGTAACG 1026965 29 100.0 33 ............................. TACCAGAATGGAATGCCGTTAAAGTCGTAATGC 1027027 29 100.0 32 ............................. TCCATGTACCCAACCGCGCTCACTGAACAGGC 1027088 29 100.0 32 ............................. ATTTGAAATATCTGGCAGACAATACCGAATAT 1027149 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 1027210 29 100.0 32 ............................. TACCCCGAAATTAATGGCGATGGGGCGTTTAC 1027271 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 1027332 29 100.0 32 ............................. TCGTGACCGGCAGGGATTCCCCTTGCCTGGAG 1027393 29 100.0 32 ............................. GTGATTCTCCGTCGTGTGCAATTATTGACGAA 1027454 29 100.0 32 ............................. CCCGTGATCATTTCAGTAAGAAGGTCACGCCG 1027515 29 100.0 32 ............................. CGTGAGAAAGGGGGTCGATACATATATCTCGT 1027576 29 100.0 32 ............................. TGATCGCCGAAATGATTGATTTTTCTTATAAC 1027637 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 1027698 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 1027759 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 1027820 28 82.8 0 ............T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //