Array 1 2632-2411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQVC010000028.1 Holdemanella porci strain MSK.10.25 NODE_28_length_27891_cov_279.744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 2631 26 100.0 39 .......................... TTTAATTTGGTATACAATACTTTTTTCCCGTTCTAATCA 2566 26 100.0 39 .......................... AATGAACTGATCTTCTAGCTTATTCCGTTGTTCTAAATA 2501 26 96.2 39 ...........T.............. TTCTGATTTTTCAATATATTCACTCAATTGTTCTAATCA 2436 26 96.2 0 ...............T.......... | ========== ====== ====== ====== ========================== ======================================= ================== 4 26 98.1 39 TACCAAATTCCACTACCCTTAAGAAC # Left flank : TCTATCTTTGTACATTCTATCTCTTTGAGTTCTGAAGATATTAATAGATCATCTTGAAACCAACTTCTTCTTATTTTTACTATTTTTTTAGCGATTGCATCGCTATAATTTTTTTTAAAGCTTCTCTTAATGTCACTTTTTAACCCCTTGAACTTGATTTAACTTTTCTTTTTTTGCTCTTAGTGGATTATACAAGATTTCTGCCCAATTTTTATATTTTATAAGTGTTCCCCCTAGTAAACACATTGCTTGTAGATTCAATATAATTACAATTAAATATTTAATCAAAGAAAAATGCTATACCTTTTTGGCATAGCATTTCTTCCAGCCCTAGGTCAATTCACATTCGTATTTTAAATGACATTTTCCATATAATCAACACCTTTTCAAGTGGCAACAGACAGGGAACCTTTATTTAGCTAAAGTATAAACTGCTTCGCAGCCTCCCTGTCCCATAAAAAAAAGCAGATGCTTTGCATCTACCTCTTTCATCTTTCGTT # Right flank : TATTACCTACATTATACCACATTTCTCCTTTATGTATAGATGTTTTTCTTAGTTCAATTTACTTTTTCCTTCAAAAAATTTCCATATGCTATCTGTATTTTCTTGTTTTCATATACCTTTTTTTACAAAAAAGATGGCACTCTTGCCACCTTTAGTTTTCTTTGTCGATACCTTTTTCTTTTTGCATCTCTTTGGTCTTGCTTGTTTTTAGGTTTTTTGGATCAATATTCATATGTACTGCCTTTTCTTTTACAGCTTTATCATATAAAGCATTTGCCTTTTCGTGTATCTCGTTTCTATCATATTTCTGCAAATCAATGTAATCTAAATAATTTGGGTCATCCATATAGCCATATTGATCAAAGTAGACTTCTCTATTGATTTCCATATCTTCTGCCATCTCTGACCACTTAGTATATCGTGCGGCCCTTCCAAATCTATACTTTAATTGTTTTATATCATCATTTTGCTGCTCTTCAGAAGTATAGTAATTACTCATA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCAAATTCCACTACCCTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2037-2203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQVC010000031.1 Holdemanella porci strain MSK.10.25 NODE_31_length_24024_cov_275.389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2037 36 100.0 29 .................................... TGATCGCATGAAAAATTTAGTCAGAGCGC 2102 36 100.0 30 .................................... GGAATACTTTAGATTGAACTTAGGACATGT 2168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTCTTAATGGTAGTGAAATTTGGTATATTTAGAAC # Left flank : ATGGACGAAATGACACACATTCTAAAAAGAATCATTCATCTGTCTTGATTATGGATAATCCATTTGCAAAAACATCAAGTTTAGAACTTCTTAAACCTATGTTAAAACTTGCAGATGCAATGCAGATTCAACTGATTTTCTTTACTCATATTGAAAATAATGATGATATCAATGAATTATTCCCATCATTGATCCAACTTCAATCTTTATCTGTCAGTGGTTCTGAAAAAGATAAACAAAACTATGTGTATGCAGAAACTCAACCTTTAAATGAAGATGCGGTTTCTAAAGAGAAAAATGTTTATCATATGGATTTTGTACGAAGCGAACAAGGACAGTTGTTCTAATAAGGTGGCAAGAGTGCCATCTTTTTTACAAAAAAAGATGTGTGAATGTAGGAAAATAAAAGCAAAGAATGGAAGTTTTTTGAAGGAAAAAGTCAATTGAACTAAGAAAAACATCTATACATAAAGAAGAAATGTGGTATAATGTAGGCAATA # Right flank : CGCCACTTATGAAATGTCTAAATATGCCACGTTCTCAAGGGTAGAGAAAATTGGTAAACGAAAGATGAAAGAGGTAGATGCGAAGCATCTGCTTTTTTTATGGGACAGGGAGGCTGCGAAGCAGTACTACCTTGATGTTGGGAAGTGGAAATAATTGATTGGATAGTGTTGGTGGTGGTTTGGATTAAATGGTTAGTTTTGCTCTTGGAGTGTCTTTCTTTTTCTGCATAGTTGGCAAGATTTGAATGTGTATAAATCTTCAACTTAGTGTGTGAAATTGTTGTAAGACTATTAAAAAATAAAAAAAGGGCGAAAAGCGAGTAGAATCTTTTATGTGTTAAAAAAAGCAGGAGGCAACACATAAATGAAAAAAAGAAATACAACTAAGAAAGTTATTCCATGTATGTTATCTGGAATGATGCTATTATCAGGATTCACCCAATATGTATATGCAGACGAAGTAGCCAATGAACCAATCATGAGCAATAGTTTCACTGATG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAATGGTAGTGAAATTTGGTATATTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2181-3404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQVC010000037.1 Holdemanella porci strain MSK.10.25 NODE_37_length_21917_cov_385.272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2181 36 100.0 30 .................................... AGTCAAGAGTTATGCATTTTAAGTTAGGCA 2247 36 100.0 30 .................................... ACTTTCGACGGTGGGATGTGATTTGTATAC 2313 36 100.0 30 .................................... TCTTTTGGTCCATTCATCATGTACCCACTT 2379 36 100.0 30 .................................... GATGGCTAACGTGTTGTAACTCGAATGTCA 2445 36 100.0 30 .................................... ATGTAGCAGAAGGCGAATCAATTCCATTAA 2511 36 100.0 30 .................................... TAAGTGGTGGGGAAGTGCCTACGGATGCGG 2577 36 100.0 30 .................................... GAAAGGAGAAAAATATGACAGTTAAACCTA 2643 36 100.0 30 .................................... GGGCGTTTGTGGTATATCCCGAATCTGCGC 2709 36 100.0 30 .................................... TACACAAGCCAAAAAACAAATTGAAAGGAT 2775 36 100.0 30 .................................... TTAATTTCTTTGAATAGCTCAGTAACTTGA 2841 36 100.0 30 .................................... ATAACCTCTTTGCAAAGTCTGTCTTGTCTA 2907 36 100.0 30 .................................... TCATGTCTTTGATGTAATAGTTGAGTATAT 2973 36 100.0 30 .................................... ATAAACGCTTTGCAAAGTCTGTCTTATCAA 3039 36 100.0 30 .................................... CAAGACAAAACATTGATTGATATTTTGAAC 3105 36 100.0 30 .................................... TTCAGATGCCGAAGTACACGATTGCTTATT 3171 36 100.0 30 .................................... AAAAACGAATCCGGTCAAACAGTGGACGAA 3237 36 100.0 30 .................................... AAAGGAGAGAAAGTTAAAGTCATGAAGATT 3303 36 100.0 30 .................................... CAACTGAAGGTGTCATGCAATATGGAAAGA 3369 36 77.8 0 ..............AAG.............T.TCGT | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.8 30 GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Left flank : AAGCAATTGATAAAAATGTTGTCACCATATTATGAAGACGAATTACAAAAAGATGAATTTGATCTAACGAGAGATGAATTGATTTTGTTTCAATTGGATTTAGTTGAATATATTTCCAATCATAATTCAAAATATGATAATATCTTTGTTTTTGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTCATATTAATGATTTTTACAAATTATTACAACGATTTAATGAATGTACAAAATACAGCTTTATTGCAAGATAAAATAATAGATTTAGCAGACATGGAACAAATTTATTACGATCTATCACAAAAATCACTTCAAACATATACATTACAGGAGGTAGAACAAATGACAATTAATTATTTACAACAAATATACACTCATAAAACACATGATATTTATCAAGAACTAGATCATTTATCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : TTTATTTCTCTTGTGTGACATTGACTACCGCATACTCACATATACCCTCTGTTCTCATTGTAAAACCCCAACCAACAAGGCCTGAGCTAATGATTTTTGTTTGTGTAGTCTTTTCTGCCGATTAGAGTTATGTTGTTTAAATGTACTTCTTGATCATTTAGAATGATAATATTGTTTTTAGTGATTTTGTGATTGAGTTTATTTCTTGTGAATTTTGTCTTGCTTTTATGATTGCCATATACAAAATAAATAGGGGGGCTACTTTAGTAAGTCTTCTGAGTTTCTTAAATAGGATTTCCATATCATATTTGTATGTGTATTCATCTACGAAGTCTTTGCCAAGTAGATAGAAATTTGGTGTTTGTGATTTCTTTTGTGGTTGTGATGTTGTAGGTGGTTTTATGGATGGTATACATATTCACAGAGCCAAAAGTAACGATGGATGTGGATATGGTAGCTGATACTATTATGCAGAATATTGGTTTTCTTTTCTTGAATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1196-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQVC010000066.1 Holdemanella porci strain MSK.10.25 NODE_66_length_12250_cov_283.505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1195 36 97.2 31 ................A................... CGGGAAACACACGACACAATGATAGATCAAT 1128 36 97.2 30 ................A................... TGTATCACCTAATTTACGTTCGGATAGCGC 1062 36 91.7 30 ................A..........AT....... AAAATTTTTAAATATTGAAAAGCCCGATAA 996 36 91.7 30 ................A..........AT....... AAAAACAGTTGATGGAAAATTTGGACGTAA 930 36 100.0 30 .................................... TTTTTCACGTCATACATTACTGGAGTGAAT 864 36 100.0 29 .................................... TTTCAAATCACAGTTGGATGAATTGCAAC 799 36 100.0 29 .................................... TTCTCAGTCTTTTAATTGAGCGATCTTCG 734 36 100.0 29 .................................... CGTAGGATGTAAAATGAGCGAACGTGCTC 669 36 100.0 29 .................................... CTAAAAAAGAAAAGTAATGAAATAAAAAA 604 36 100.0 29 .................................... AAGTAGGATAAAGTTATTGTTTCTAAATG 539 36 97.2 28 ................A................... AAATATTGTCTACAAAAACGAGGACATC 475 36 94.4 30 ...........................AT....... TGACAGGATATATGTGAAAAATAAGGAGAC 409 36 91.7 29 ................A..........AT....... GATATCCATTATGTATTATCATTTATTGA 344 36 91.7 29 ................A..........AT....... TTATTGATGAATCTGAATTTCAAATCATG 279 36 69.4 0 .........A.C....A......TG.AC.AA...TG | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 94.8 30 GTTCTTAAGGGTAGTGGAATTTGGTATGATTAGAAC # Left flank : AAAGAATTACAAGAACAGCAGGAAATCGAAGGAAAATTGATTGATAAAGGTAATACTGAACAAAATAGTGTTGTAGAAGATATTTTGGAATCAAATCCGATTATAGAAAAAGAAGTGCCAAGAGGAATCAATGAAATCCTGTCTCAAAGAGAAGAAATACAACAAAATCTAAGAGAAGATTCTAACAAAGAAGATAAAAATATTGAACGAAACGAATCTATAGAAGATGTTGTTTTGGACTGGAGAGCTGAACACCCTCAAGGGACAATTGCTGAATGCTTCAAAGAAACTGGTATCAGTCGCAACGATATTCGACGTTGTTGGAATTTATAAATTAATTTTAGATGAAAGGTGGCAACGATGCCATCTTTTTTTGTAAAAAAGATGTGTGAATGTAGGAAAATAAAAGCAAAGAATGGAAGTTTTTTGAAGAAAAAAGTAAATTGAACTAAGAAAAACATCTATACATAAAGAAGAAATGTGGTATAATGTAAGCAATA # Right flank : GAAAGAGGTAGATGCGAAGCATCTGCTTTTTTTATGGGACAGGGAGGCTGCGAAGCAGTGTTGGCTTGAATTAGAATGAGCTGTTTGCCCTCTATGGTTGTGCAAGGTAATCCGGTGATAAAGGTGGCAACGATGCCATCTTTTTTGTACGACAGGCAGTCGTGCTTATAGTTGATAATCTAAATCAATGATTATCAACTGTTTTATTTTAGAGACAATAAAGTACAAGATACTCGTAACACTA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTAAGGGTAGTGGAATTTGGTATGATTAGAAC # Alternate repeat : GTTCTTAAGGGTAGTGAAATTTGGTATATTTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //