Array 1 66146-65507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQCA01000043.1 Levilactobacillus paucivorans strain DSM 22467 NODE_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66145 29 96.6 32 ............................C CAGTAGCTCCAATGGAATTTGTAGCGCTTGGA 66084 29 96.6 32 ............................C AAAGGTAAAGCGCTTTTTCAAATAGACGTGAT 66023 29 96.6 32 ............................A GACCGCTGCGGAATCGTCACTTCTTTCACCAA 65962 29 100.0 32 ............................. CCAAGACCTTCCCGCATTTAGGGAAAGTGTTT 65901 29 96.6 32 ............................C CAAGAAAAATTTAAAGCACCTGTTAGCCCTGG 65840 29 100.0 32 ............................. AATTTGGCCTCATGGTATGGTTATAGAGATAC 65779 29 100.0 32 ............................. CTAAATCACTTACTAAGCTAATTGAGTTACTT 65718 29 100.0 32 ............................. TGGCCCCAGAGGCGTGTTTAAAAGTCAGATCC 65657 29 100.0 32 ............................. AATCGTTCGGAGCGTTTCCATATAATCATTAC 65596 29 100.0 32 ............................. GATTCCGAAATTATTGCTAACCTCAAGGCGCT 65535 29 82.8 0 ..................A......ATTG | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTACTCCCCACGTATGTGGGGATGATCCT # Left flank : ATTGAAGATGAAATTATGTCGATCGGTGCCGTTAAACAGGTAAAGGGCGAAGCCATTGAGAGCTTTTACCAATTAATTCAGATTGATAAACCAATTCCTAAAAATGTGGTGAGCCTAACTGGACTAACTTCTGAATTATTAAATGAAAAGGGAGTTAGTTTGGCTGCCGGTTTGCGGGACTTTAAGGCGTTCATTGGTGATAGGCCACTGATCGGGTATAACCTACACTTTGACGAAACTTTCTTGACGGCTGGTTTTAAAAGGATTGATTCAACAGATCTAGGTAATCAAATGGTAGATCTGATGCCGGTAGTTAAGAAAGCTAACAAGTTTTTGGATAATTATCGGTTAGAGACGGTGCTGGATGATTATGGTATTGAGAATAAGACCCCTCATCAAGCGTTAGCCGATGCTCAAGCGACTTTGGATTTAGCAACCAAACTGAATGAAACAGGCGTTTTGAAAATTTGAGAACCGCGGTATGACTGCGTTTCTTTAGT # Right flank : AAAAGTAACAGCTTTTACCGGTAAGAGTTCCTTGTTGATGAGGAATTTTTACCGGTTTTTATATGTACCAATAGATGATGAATATCTAGTGGAGAGTATAGATAATGACACATGATCACCTCAAATCACAGTGAGTGAAACAATGATGATAAAAAATTGAGACTTAGAAATAAACACTATAAGGACACTGTTACACCAACACTTTAGGCTCAATCTATGACTGATATTACATAACACCTAATTTAAACCAAAATTATCTGAAATTCCTGCTATCCCTTGGCACAGTAGTGCTGGATTGGTTTCATGAAGAAAAAGTGACGTAGAATGAACGTTCACAGTATTGTTAAAAACAATTAACGGTGTTATATTAAATGTGACCATTAAATAAACTACATATTGCTGACTAATAACGACTAGGGAATTGTCATTAACGACAGGGGACTTAAAAATGAAAATGGATCAGAAACTAACAAGAAAACAACATCAAAATCGGTGGCTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCACGTATGTGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76545-75965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQCA01000043.1 Levilactobacillus paucivorans strain DSM 22467 NODE_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================== ================== 76544 29 69.0 155 T...T.G.T.G.....T.A.A...A.... TATACGATCGATTCTAGGGTGAAGGACCAAATCAATTATTGTTGGAGAGTTATCGCTAAGGTATGCTTAAAAAAGCAAGTAAAGGTTGAGATGCAAACTAAACAAAACGGACTGTTTCAGAAAATTGAAACGTTGGTGTAGCAGGGATTCTTTAG C [76521] 76359 29 96.6 32 T............................ TATGCCAATAGTGATCGCCTATTACTAGAATG 76298 29 100.0 32 ............................. TCGAGGCGATGGGGATCGAGCATGCAGAAAAG 76237 29 100.0 32 ............................. TCATCTTAAATGGCGCTTCATCAATATAGTCT 76176 29 100.0 32 ............................. CGCTTGTCCTCATCGCTCAGATCTAACTGATC 76115 29 100.0 32 ............................. TCACAAAAAACGATTATCCTTCTTCGATCTTT 76054 29 100.0 32 ............................. CATGAACTTCCAGTACCGAATGGTGGCCAGTG 75993 29 82.8 0 A.C...............A........TT | ========== ====== ====== ====== ============================= =========================================================================================================================================================== ================== 8 29 93.5 50 GGTACTCCCCACGTATGTGGGGATGATCC # Left flank : GTCTTGTAGCGCTTGTCAGTCATGTATTGGCGAACTAGTTCCATCAGGACAACCGACTTCCCAGTTCCTGCAGCACCTTCGATAATGGCGACGGAAGAGGTGTTGCCTTGCAGGCCTTGCTTGATGTAGTCGTTGATGTTGGTGATGACCCGTTTCTGGTCGTCGGAAAGGTCATCGACGAAGAATTGGGCTTTTAGAATTTCATTCATGGTAGGGCTCCTAATTTAGTTTTTTTAGCGTCATTTGGGCATTAGGCGCCTGGTAAACCTCGATAAATGGGGCATCCGTTTTGACGGCGAATGGACCATTTTGAATTTACTTTCAGCGGTGATTATATCATATTTTGGGGGTGAATAGAGAGTGGGGGAGATGGGTGTTGGCAGGAAGCCGTTGTTAAATGAGCTTATGGGATTTGGGTGAAAAAGGATGGACATATGTTATTTGTCTAGAGTATTTCGTTTGAAAAACCATGTAGGGATTAAATCAGGAAATTTAAGGTG # Right flank : TTTACGATCCCTTTCGAGTCACAAGAGAGTTACTCACATATGTGGAAAAGCTTAAGAGTATTTATTCATTAAGTGAGAGATGTTTCTAAACAGAAATGTGTAGAAATAGAAGCTAGGTTAGTTGGTACGCTAAATATCTAGAAAGGTGCCGCTACTGTTTAAGGTGTGAGAATGCTCAACCGGGTATCTCTAGATATGATAAAATGAGTGCACATGCCTACAGTGGTTGATAATACTGGGTTTAAGGCTACAAATTTCGATATTAAAATAATTAGAAAACACTACTTATTATTTCGTAAGACGTCTATATTGACTTAAACCGTCTTTATCTGTATCTTCAAAGATACGATGGCATCAGGCTTTCGACGTCTTATTGAACGGCCTACAATCGTTAAAAAGAAATAGTTAAGAGGATGTACATATGGCGATAAAGATATCTGATCGAACATCGGTACTTTGGGCTAAGAAACGTACTGAGGACGGGCATCAATCCTGGTTGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTACTCCCCACGTATGTGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1090-1253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQCA01000006.1 Levilactobacillus paucivorans strain DSM 22467 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1090 31 100.0 35 ............................... TTATTAGGCATAATTCTAAAGTTTATGAGTTTTAG 1156 31 100.0 35 ............................... AGTTTAACCATGAAAGTATTTCTGATGAGTTTTAG 1222 30 77.4 0 ..............C.CT...G..T....T- | GG [1235] Deletion [1252] ========== ====== ====== ====== =============================== =================================== ================== 3 31 92.5 35 AAGGATGTTAAATCAATAAGGTTAAACCCCA # Left flank : AACTTATATTCACACCAAAGCCAATGGCTGGTGTTATTTATCAAGCATTCAGGATTTATATTCACGTAAAATCATTGCCCATAAAATCAGCCGTCATATGACTGCTGATCTTGTGATCAGCACTTTTCAACAAGCCTTTGAAACTAGAAAGACGACTAATAACTTAATTGTGCATACCGATCTGGGTAGCCAGTACCGCAGTGCTGGCTTTGAACAGATCTTAACGCAACACCATATTCGCCATTCTTATAGCAAGCGTGGCTGTCCCTATGACAATTCATGTTTGGAATCATTTCACGCCAGTTTGAAAAAAGAAGAGGTTTACCAACACCATTATCAGGATTTTGAAGAAGCAAATGCTGCAATATTCAGCTACATTGAGAGCTTTTATAACAGTGCTCGAATTCACAGTAGCATTGATTATTTAACTCCAAATGAAAAGGAAAAATTAGTCGCTTAAATTATACATAAAATGTGTCCAGATTCTTGACCTAAATCCA # Right flank : AGTGGTCTTTTTTGATTCTGTGCTATACTAGGAATTACAA # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGGATGTTAAATCAATAAGGTTAAACCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //