Array 1 249180-253046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFCK010000003.1 Klebsiella pneumoniae strain 9-77 NODE_3_length_345602_cov_69.821558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249180 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249239 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249300 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249361 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249422 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249483 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249544 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249605 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249666 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249727 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249788 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249849 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249910 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249971 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250032 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250093 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250154 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250215 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250276 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250337 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250398 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250459 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250520 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250581 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250642 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250703 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250764 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250825 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250886 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250947 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251008 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251069 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251130 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251191 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251252 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251313 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251374 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251435 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251496 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251557 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251618 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251679 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251740 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251801 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251862 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251923 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251984 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252045 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252106 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252167 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252228 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252289 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252350 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252411 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252472 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252533 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252594 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252655 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252716 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252777 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252838 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252899 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252960 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253018 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //