Array 1 2-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJW01000315.1 Escherichia sp. TW09231 contig_315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 32 ............................ TGCTGCCGTACCGCGATTACAACCAGGAATCC 62 28 100.0 32 ............................ GCACGAACTGCGCCCGGATTTATACCCGAACC 122 28 100.0 32 ............................ GATCAATGCGGCGCTGATTTCTCGCTGCGCCG 182 28 100.0 32 ............................ AGGTCTGTAGCGTCCTTGTAATCTCTCGCTTT 242 28 100.0 32 ............................ ACCAAACTGTGCGGCAGCTTTGCGGGAGATGT 302 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACGGCCT 362 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 422 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 483 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 543 28 85.7 0 ...........A........T...C..T | C [566] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TG # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27046-26834 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJW01000094.1 Escherichia sp. TW09231 contig_094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27045 29 100.0 32 ............................. GAGGCCGAAAAACATGAGCATCATGAACTCAA 26984 29 100.0 32 ............................. CTTTGCACAACGGCACCCTGAGTGGATTGTTA 26923 29 100.0 32 ............................. GGGCAGATCGCCCGCCGCGATACGCTGGCAGA 26862 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTACCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAACAACATATCCAGGTAGTTCAAAATAACTCTCTACCCCCGAGAATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAACTGGCATTTGTATAATTACTTAAACTATTAAAACCTTCTACTATCTTGTTTCATTTTCAGCAATATATCCGGCTATTAATTAATTTTTCAGAATAAAACTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGGAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTAGTTTTGCATAACCCATTTTATGCACTATTGATAAATAGTTCTTATGGGTAAAGATATTCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTCCTTTATTCTAAGGATATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 391-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJW01000424.1 Escherichia sp. TW09231 contig_424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 390 28 100.0 32 ............................ TTGTATGAATCAGCCAGGATTTCGTAGGGTTT 330 28 100.0 32 ............................ GAATTTTGGTGCAACAGCACCGGCCACCGGCG 270 28 100.0 32 ............................ TCGCGGAAAGCAAAGAACTGGTAGCGACAAAA 210 28 100.0 32 ............................ GCTCGCGTAAATCGCTGCCAGCGGCAGAATGT 150 28 100.0 32 ............................ AATCTGTATACACGAATGAGCAGTCCCCTGAG 90 28 100.0 32 ............................ GGATGTTGAGTTCGTTCGTAACAACGCGGGTC 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGGGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCC # Right flank : AAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //