Array 1 918-535 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZYG01000047.1 Neisseria meningitidis strain Neisseria meningitidis isolate R035, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ======================== =============================================================================================================================== ==================
917 24 100.0 44 ........................ TCCAGACCTTGGGATAACAGCAATATTCAAAGTTTATAAAAGAC
849 24 100.0 44 ........................ TCCAGACCTTGGGATAACAGCAATATTCAAAGTTTATAAAAGAC
781 24 100.0 48 ........................ TCCAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG
709 24 100.0 127 ........................ TCTAGACCATTGGACAGCGGCAATATTCAAAGATTATCTGAAAGTCCGAGATTCTAGATTCCCACTTTCGTGGGAATGACGGGATTTGAGATTGCGGCATTTATCGGAAAAAACAGAAACCGCTCCG
558 24 95.8 0 ..............T......... |
========== ====== ====== ====== ======================== =============================================================================================================================== ==================
5 24 99.2 66 CCGTCATTCCCGCGCAGGCGGGAA
# Left flank : AGCTTCAAGCTTGGGGCGAACGCAACAACGTAACCGTGATTTCGCAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATTGTGCTGGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCACTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCACACGAAATCATCGTCGTGCTTGATGCCAATATCGGTCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACCGGTTTAATTGTTACCAAGCTAGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCCTCCGACCGCCCCGTCCCCGTCCGCTATATCGGCGTGGGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGAGCCGAAATGCCGTCCGAAAACAGCAGACCGATG
# Right flank : TCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAGCATTTGATTGAGGGATTTACATTACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGTGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGCCCGTCATTCCCGCGCAGGCGGG
# Questionable array : NO Score: 2.66
# Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : CCGTCATTCCCGCGCAGGCGGGAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: NA [-1.40,-1.30] Score: 0/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.27,0.37 Confidence: LOW]
# Array family : NA
//
Array 1 45-213 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZYG01000097.1 Neisseria meningitidis strain Neisseria meningitidis isolate R035, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= =========================================== ==================
45 29 96.6 39 .............T............... CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACC
113 29 96.6 43 .........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC
185 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= =========================================== ==================
3 29 97.7 42 CGTCATTCCCGCGCAGGCGGGAATCCAGA
# Left flank : GGTTCGTGGGAATGACGCGGTGCAGGTTTCCGTGCGGATGGATTC
# Right flank : ACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAACCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGCAGGCGCAAGCGCAAGCGCATAAATACGCTATTGTAATGAACGCGCAAAATCTGCCCGAGGTAAAGTGGGGGAATCAATATCAGTCATTGACGCACAAAAGCAATGAACGCGAAGTTATCCATACGAGTGGTTTTAGTTTGGCAAAAAAGCACATTAGTTTCTCATTCAATAATACCGATGAAGTTGTTGCTGAAAAAAAAGATGCTGTCGTTTTCGGCGCGGCGACT
# Questionable array : NO Score: 2.56
# Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : CGTCATTCCCGCGCAGGCGGGAATCCAGA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-12.60,-11.30] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [0.74,0.68 Confidence: LOW]
# Array family : NA
//