Array 1 2725179-2725633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853997.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2725179 29 100.0 32 ............................. ACGCACCTTCTCGGCCCCTTCCCGGCGAGTGA 2725240 29 100.0 32 ............................. GCCCTGTCCACCAGCCTGCGTTCGCTGCTGCT 2725301 29 100.0 32 ............................. TCTCGTGCGCCACCTGCTTGCTGACCCACCAC 2725362 29 100.0 32 ............................. TTTCGACCAGCGTGCACTTGATCTGAAACGCA 2725423 29 100.0 31 ............................. ATATGGGAACCGGCATCCAGAGCGGCTCGTC 2725483 29 100.0 32 ............................. AACGACAAGTGGTCGACAGGCAAGGAGTACAC 2725544 29 96.6 32 .................T........... TCCTGTGGCGCCGGCGAGGGCGAGTCCTGCCG 2725605 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTCCGGCCCGGGCGCGCAGGGGCTGACCG # Left flank : CGTCGAACAACCCGGCAGCCGCGTCCGACAGAAAGCCGGCCTCAACCGTGGCATCCTCGATGCCGCCCCCGGCGAACTCCGACGCCAACTCACCTACAAGACTTCCTGGTACGGCTCCACCCTCGCGGTCCTCGACCGCTGGCACCCGTCCAGCAAGACCTGCTCCTCCTGCGGAACAGCGAAACCCAAGCTGACCCTGAGCGAGCGGGTGTTCACCTGCACCACCTGCGGCCTGACGATCGACCGCGACCACAACGCGGCCGTCAACATCGCCAGACACGCCGTCGTCCCCCTGGTAGAGGGGGACGCTAACGCCCGCAGAAGTCCACGCCCGGCCGATGCAGGCCGGGACGGACACGCCGAAAGGCAGAAGCGGGAAGGCCCACCACCCGGTGGGTCACCTCGGCGGGAGTAATCCCCCCGACAGCCCCCACACCCCGGACAACTCCACAGAGGGTCAAGAAAGCGCAAAGCCCGGACAACATCCCAGGTCGCAAAGG # Right flank : GGCAATCCGCTTCAGATCTACCGGGTTCCAAGGTGCTGTACCTGCTGCTCGGCGACGTCTCGGAGGGTCACCGAGCAGCAGGCGGCTCAGCTGGTGGCGAGCACGCCGAAGTGCTGGTCGATCAGCTCGGCGACTTCGACGTCCCAGCCTTCGGGGAAGCCCCGGCTGTCCACATTCACCACACCGGCGACGCCGAGGTAGGCGTATGCGCGATCACGGGCGACAACCGTGGGGAGTTGCTTCACGAGGAAGCCTCGGATGGCGTGCACGGAGGCGTCGCCGAAGCCCGAGTCCTCCAGGGCGCCCCCGAGATGATTGACCACGCGGCCTACGGTGGCGTGGCGGGGAAGGGAGCAGCGGAGTGGACCTTGGTCGTGCAGCTGTCCGCCAGTCAGGTCCTGGAGGGCTTCGCCGACCAGCTGTGCCACGGCGATAGTCCGGGGGCGCTTTCCCCTGAGCACGGTGACGTACCAGCGGGAGCCCTGGCGCTCTACGGACCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGCCCGGGCGCGCAGGGGCTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGGCCCGGGCGCGCAGGGGGTGACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9868-9473 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9867 29 100.0 32 ............................. CTTCGACCGGTGAGGATGCTCGCCCACTCGAT 9806 29 100.0 32 ............................. CTGCGCCCGCACGGTGGCATTGACCTGACTGG 9745 29 100.0 32 ............................. GACGCATGCCTGCCCCCGACGACCTGACCGTT 9684 29 100.0 32 ............................. GCCTGGGCCCAGGATGCCGGCATCCGCCCTGA 9623 29 100.0 32 ............................. CAGGCGGCGATCGCGTCGCGGATCTGTGCGGA 9562 29 96.6 32 ............................T ACACGGCGACCTGGGTGGCCCAGATGAAGCCC 9501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTCCTCCCCGCGCGAGCGGGGGTCTGCCG # Left flank : ACGCCTGCTCGCACCCGGCGCCGACATCGCCGCCCCGGACCCTGACGAGCAGCTCGTCGACCTCTGGGACCCGGTCGTCGGAGTAGTCCCCGGCGGCGTCAACTACTCCGCCGGGGAAGGCCCGTGAACCGTCCACAGCCCGCAGGCAAGGAGCCGCTGTGGCGTCCCTGACCGTCCTGTCGATGACCGCCGTCCCGGACCACCTACGAGGGGCCCTGACACGATGGCTGCTGGAAGTCACACCCCAGCTGTACGTCGGAACCATCTCCGCCAAAGTCCGCGAAGAACTCTGGGCATCCGTCAGCAACTGCATCGCAGACGGAGTAGCCGTCCTCGTCCACCCCGCCGCCAACGAACAGGGCTTCGCACTGCGGACAGCAGGAACCCAACGACGCCAGCCCGTCGACTTCGACGGACTGCTGCTCATCGCCCAGGCACGGCCAACTGCACCAGAAAGTCAAGAAATCGCAAAGCCCTAGAGAAAGCGCAGTTCAGAAAGG # Right flank : CCGCACGCCATGGCCCGGATCGTCCTCGCCGACCAGCCGCGCCCGCACCCGTTCGGCGACGGGCCCGGTGCCAGTCAGCAACTCGACCGTGGCGCTGGCGTCGATCACGATCACCGCGACCCGCCCTGCTGTTTCTCCGCCCAGGCCTCCAGCAGATCGGCCATCGTCAGATCCTCGGGCAGGCCGGCCAGTTGTTCCGGGGCCGCGGCACCGGATTCTGCCAGAACCGCGCGAACTGACCGGAACGCCCAGACGACATCCGCCGCCCCGGCGTCGGGCTGCGCCACGGCGCGGAGCTCCTGCAGAAGTGCATCGAGCCGGCTCTCCAGCCGGGTGAGGTAGGTGGGCAAGGCCTCGGCCTGGCTTTCCGCGCGGACGTCCTGGAGGGCTTCGTCGATCTGGTCGCTGGTGGGGCGGCGGCTCGCGGACCGGGCTCGTTCGGCGATCCGCTCAAGGTCGGTGGCCTCCATGGGCCTGGGGCCCAGGTGCGCGGGGGCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20132-21500 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20132 29 79.3 32 CCT..........A..........CT... GAGGTGCCAGCCCCCACTGACAAACCGCGAGC 20193 29 82.8 32 ............GA....A.....CT... CTCTCGCGATGCCCGAAACCGAAGCCGGAGCA 20254 29 96.6 32 ................T............ AACCAGTCGTTCGCGATGTCCACCGGCCGCTC 20315 29 89.7 32 .............A...........C.T. CCTGAGCCGGCCGACGACCGGGCCGGTGCGCA 20376 29 86.2 31 C............A........G..C... CTCATCTCCACCGACCCGCCGCCCCCACCCC 20436 29 96.6 32 C............................ CCTGACGGTGCGGCGTCGGATCGTCGGCGACC 20497 29 100.0 32 ............................. CAGAACCACCGGGTGCCGGGGATCATCCCGCA 20558 29 93.1 32 ..........T...........G...... TCGTAGGCCAGACCGCCGTAGGCGCGGCGGCC 20619 29 93.1 32 C................A........... CCGCGCGAGGACGTCATCGCGGTGATGAAGAA 20680 29 93.1 32 C.T.......................... CGGGCGAGGCCGGTGGCGAAGCTGGGGAGGAG 20741 29 89.7 32 .........AT..A............... ACAGTAGCGGTGGCGCTTTGTGGCGTCGCGGC 20802 29 93.1 32 .C...........A............... TCGGCGTCGGCAAACAGCTGCGCCTCGGTGTC 20863 29 89.7 32 ...G.........A..............T CCACCGAGCTGTACCTGGAGGCTGCCTGATGG 20924 29 82.8 32 ..TG.........AG....A......... GCACCCGGCCGGCTGTTCAACAGCGTTCCGGC 20985 29 82.8 32 .........A..A.....A...C..C... GAGAGGGCCACCGGCAAGGTCCTGCCTTCGAC 21046 29 93.1 32 ......................C..C... GCTCGAACTCATCGGTGATGCCGAGCTGGGCA 21107 29 89.7 32 .............A...........CT.. ATCACCGCGACCGTCCTGCGTTACTCCACCGC 21168 29 96.6 32 C............................ CCGGGCCAGCGGCCGGCCTGGGTGCGGCGTCC 21229 29 100.0 32 ............................. CACCGCCCGATGTAGACATGGCCGATGAGGAA 21290 29 86.2 32 ............TAG.......G...... AGCGCGCCCAGGGCGGCCCGCACCGTCTTGAG 21351 29 96.6 32 ............T................ GCGGTGCTGCGGGAGCTGCGCGCGGGCGGCGA 21412 29 100.0 32 ............................. TAGTCCTCGACGTCCCCGGTCACCGCGGCGGC 21473 28 93.1 0 C.....................-...... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 91.5 32 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CGCATCGTCAGAGTGGCTGGGAAGATCTCGGAGACCGTCAAGACGGCACTGATGATCGCCTACTACCTGCTGGAGATGATCGAGAAGCTGTAAGCCAACTCAACCATCCCCAGCGGGAAGCCACCTCGACGGGAAGGAAGGGTCGCCTCACCTGCTGCACGCAATAGCGCGACCCTTCCTTCTTTAAAGCCAGGATCACGTCGAAGACGCAAGCAAAGCCGGACCCGGCAGCCATCCGACTATCCCCAATCATATTTCCCGTAGCGCCTTCAATGCACCGGCCCGAGCGGCCATCACCAGTTCCAGCGATGACACAGCCGCCCCAGGCGAGCAATCACTAGCAGGCCACGTCAAACGGTGGCACCACTTTCATTTCGCCGTCTGCCACTGCTGCGCTGCGCGTCTGCGTCGGCCTGAATAGAGGCTTGGTAGCATCGACGAGCCCCGCAACAGCGGGGGTGGGCCCCCTCTCTTCAGACCGGGCCAGACACGCAGCAAAT # Right flank : GGTCCTTCCCCGCGGCGGTGTTGGAGGTTCAGGGTGTCGGCGGTGGCGTGAGCTGGCAGACCACGACGAGCTCCAGGCGCGGGACGATGTAGTAGGCGACCAAGCCGCCGGCGACGTCGAGGTAGCGCATCGGCTCGCCGCTGCCTTGGTAGGAGGTGCCGTCCAGGTAGAGCGCTTCGGCAGCTCGGACGAGTTCGGCGGCCCGCTGCTCGACGGCGGCAAGGAAGTCGGTCGGGGTGCCGGCGGTGACGTGCTGCTCGTTGGGCAGGTACTCCCAGCTCCAGGTCACTCGTTCACCGCTGCAAAGGCGGCGCGGTAGAGCTCGGCAACGGTGGTGGCGTGTTCCCGGCACTCCTGGATGGTGACGGCGTGGTTGGCGAGGTAGTTCGCCCGGTGGTAGGCCTGTGCGGTGGCCGGATGCCGCTCGATCTCCACGACGGCGGCCCAGTGCGCGACGAACGAGCGGATCGGTTGGACACTGCCCGTGGCGATGGCCTCGG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23487-27500 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 23487 29 93.1 32 .............A......C........ GCGGCGGAGGAGCTGGCGCGGGCGCAGGAGCA 23548 29 100.0 32 ............................. ACCCCACGACCCGCGACCGCGACCTGGCCGCC 23609 29 96.6 32 .....T....................... GAGTGCTTACGGCTCGCCCCGGGAGTGGCGGT 23670 29 100.0 32 ............................. CACGAGGCGGCGCTGCTGCAGGCCGCGATCCA 23731 29 100.0 32 ............................. GCCCGGGGTCAGCGCATCCGCTACCACGACGC 23792 29 100.0 32 ............................. GAGCGCGAGATCTACCGCCAGCTCATGACGCA 23853 29 100.0 32 ............................. TCGTTGAACGAGCTCGTCGCCGAGGCGGTTGC 23914 29 100.0 32 ............................. TCGGGTGCGGCCCGGTCGGTGGTGGTCTCTTC 23975 29 93.1 32 .............A...........C... TTCCGACTGCTGCGCGTGGCGATCCTGGCCGG 24036 29 96.6 32 .............A............... ACGGTGCAAGGACAGATCAACGCCGTGATGCG 24097 29 89.7 32 G............AG.............. GCGTTCGGCGCGTGCGTCACGTTGGCCAGCGC 24158 29 93.1 32 G..G......................... CGCCTCGTCCTCCAGTACGACGACCTTGCCAA 24219 29 100.0 32 ............................. CTCACCCCGGAGCTGAACGATTCCGTGGCGGC 24280 28 79.3 205 G..........T...T.....C.-G.... TCGGCGGTCCTCGGCGCCGCCGCGGCGGCCGGATCGTCCCCGGGGTTCAGTGGGCGTGGGCCTTGAGGTCGGCGCTCACCGGGGGCATCGTCGTACCGCCGTGACACGATGCCCCGCGCACCGGTCCTTGATATCTGAACCTTCCTCAACAGCCAGGCGTGGCAAAGAAAGTGCAAAGTCGCCATAACGCTGCAGGTCGTGAAGC 24513 29 93.1 32 A..G......................... TTCCCCGTGGTCGTGGTGGAGCTCCGGGGGGT 24574 29 93.1 32 G..G......................... TTCCTTCAGGCCAACCCGGGGCTGATCGAGGC 24635 29 93.1 32 G..G......................... CTGGACCCGGTCTGGCGCGAGGACCTGGCGAT 24696 29 93.1 34 G..G......................... ATCCGATTCCGTCTGGACACCACATCCTGGCGAT 24759 29 72.4 25 G.T......T...AG......C.T....C GGCTCTCCTAAAGCCGGTGTCGCAG CCC [24780] Deletion [24813] 24816 29 86.2 32 G.G..........AG.............. TCCGGGTCCGAGCAGAGTCGGCGTCCCAGCTC 24877 29 79.3 32 G..G.....A.A...A...........T. TCGGCCAGGAGGACAGCGAGGAGATCCTGCTC 24938 29 96.6 32 .............A............... GAGAGGACCCGCCGATGCCCACGCTCACCGCC 24999 29 93.1 32 .............A....T.......... GTCGACCTGGAGCGGGTCCCGCTCGGCCCGTC 25060 29 96.6 32 .............A............... ATCGCGGCACCGTTCCGGGCCGGGTTCAGCTC 25121 29 93.1 32 .............A..............C CTTTACGGCGTAAAGACCGGAGATCGAGAGAC 25182 29 82.8 32 G........A....G....T.A....... CCGGGATGTAGGCCCTCGCCCCGGAGTCCCGG 25243 28 72.4 204 G.T.....T.TT...T.-....C...... TCGGTGGTCCTCGGCGCCGCCGCGGCGGGCGGGTCGTTCCCGCGCTTCAGTCGGCGCGGGTCTGGAATCTACATCACCGGGAGAACCGTCGTACCGCCGTGACACGATGCACCCGCACGCAGCCCCTTGAGATCTGAACCTCCCTCAACCGCCAGGCATGGCAAAGAAAACGCAAAGCCGCCACAACGCTGCAGGTCGCGAAGC 25475 29 100.0 32 ............................. AACATCATCTTCCCGAACTCCGGCAAGGCGGT 25536 29 100.0 32 ............................. AACATCGAGCAGCGGCACGGCGGGATCAACAG 25597 29 100.0 32 ............................. CACGACGTGGCGGACATCCGGATCGCGGCGAT 25658 29 100.0 32 ............................. TCGGCAGGAAGAGGCCGCGATTCTGGCCGCCG 25719 29 100.0 32 ............................. TTGTCGAACCGCGTGCTGATGCCGACGAACCA 25780 29 100.0 32 ............................. TGGCAGCTGTACGGCGAGGTCGGCCTGGAGTA 25841 29 100.0 32 ............................. CTGGTGGCGGTCTCGTTGATCAGCAGCGGGGC 25902 29 100.0 32 ............................. GAGTTGGTCGAGGCTCAGCTGCGGGCGCACCG 25963 29 100.0 31 ............................. GTGGTTGGTGCCGTGCCGTCCGGGCCTGGGG 26023 29 100.0 32 ............................. GCGTACGACGCCCTGGTGGCCGAGCGCCTGTC 26084 29 96.6 32 ............................A GCACCGCGCACGCCTGCACCGGGATCTCGGCG 26145 29 100.0 32 ............................. GCGCTGGCCGCCGAGTCCGTGGAGGACCCGGA 26206 29 100.0 32 ............................. TTGCCGGAGGACGAGTACCGGGACAAGCTGCG 26267 29 100.0 32 ............................. CGCGCGCCCGCGTCGCCGAACTGGAGCAGCAA 26328 29 100.0 32 ............................. GATAATCACCGTTATCCTTCCCTCTCCGTCGC 26389 29 96.6 31 ........T.................... TGCCTTGGCGTCGGCCTCCAGCTCCTCGGCG 26449 29 93.1 32 G.......T.................... ACCTTCGCCGAGGCCCTGCTGCTGGCCGCGAG 26510 29 96.6 32 ........T.................... TGGCTCAGGTAGCCGCCGGCGGCCGGGTCTGC 26571 29 96.6 32 ........T.................... CTGACGTCGCCGCCCGGGCCGCGGGAGGAGAC 26632 29 100.0 32 ............................. CTCGGCGGTCTGTCCGAGCACGCCCGCTGGAC 26693 29 100.0 29 ............................. AACGTCTCGGTGCGGACGTAGGCGGCGGC 26751 28 93.1 144 ......................-....T. GCGCAGGCCTCGAGGTCCTGGGGCATCGTCGTATCGCCGTGACACGATGCCCCCGCACGCAGCTCCTTGAGATCTGAATCCCTCTCAACCGCCAGGCGTGGCAAAGAAAGTGCAAAGTCGCCATTACGCTGCAGGTCGTGAAGG 26923 29 86.2 32 G..A.........AG.............. TCCTGGCCGGTGTACTTCCGGACGCGGGCGGA 26984 29 86.2 32 G..A.........AG.............. CCGCCCACGCAGCCGCAGCACAGCAGGCGCCC 27045 29 86.2 32 G..A.........AG.............. GAGCTCCCGCGCCACAGCCAGCGGTTCGCGCC 27106 29 89.7 32 G..A.........A............... GCCCAGGCCGCGTGAAGGACCGCCTCACCGCC 27167 29 89.7 32 G...........TA............... GCCCACACCGCGGGCGAAGTGGTGTGCGAGGC 27228 29 93.1 32 G............A............... GCGGCTTCGGGCAGGTCTGGGAGGCCTACGAC 27289 29 89.7 32 .......T..............G.....A GCGGCGGCGACGTCGCCGTAGTCGGCCCGGTG 27350 29 96.6 32 .G........................... ATGGGCTCCGACACGTCGATCCGCGACAACAT 27411 29 93.1 32 G..G......................... TTGTACCAGGCCTACTCCGGCGGCCGAACCTG 27472 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 59 29 94.3 40 CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : AGCCGCTGTAGCGCAGGAAAACGCGCATGACCACTCCGTCGTCCCCGCGCGAGCGGGGGTCAGCCGCCCTCCTTGCAGGGGATGTCCGCGCACGAGTCCTCCTTCCCGCGCGAGCGGGGGTCAGCCGTCCCGGGGAGCGGCCAGCGGAGCAGACCCGTGGTCCTCCCCGCGCGAGTGGGGGGCAGGCGCCGGCCAGCGGGCCCAGACTGCGTCCTCCCCGCGCAGGCGGTGGTCAGCCGGCGGGATGCAGGCCCTCGCCCCGGAGTCCCGGGTTCTCCCTGTTCGATCGGGGCCGGCCGTCGGCGGTCATCGGCGCCGCCGCGGGCAGGTGGTCCCTGGGGTTCAGCCGGCGCGGGCCTGGAGTCTGCACTCCCGGGAGAACTGTCGTACTGCCGTGACACGATGCCCCCGCACGCAGCCCCTTGAGATCTGAACCTCCCTCAACCGCCAGGCATGGCAAAGAAAACGCAAAGCCGTCATAACGCTGCAGGTCGCGAAGC # Right flank : GCTCGTCGGCTGAGGTTCTCGACGGGATCCGCGTCCCTCGCGCCGGCACCGGTCGCCAACCAGCCGGATGATCACTCAGACAGCCCCTAGCAGGCTCCGGACAACGCAAAGGTCTGAATGTCTACTTGTGGGTTTGCCCAGTTCATCTTGAACACGAAGCGAGGGTTCTGCTGAGCCTCGGCATGACGATAGAGCATGCCGATGGTGCTGGTGCCGCCGACTTCTTCCTTCTGATCCTCAGAGGCAACTTCCTGGGAAGGGGAGAAGGACGTGAACTTGAGCTCCCCTGTGTCAGGCCAGTAGATGGCTACGACTACAGGCGGAGAGTATCGGCGAAGCCTGGCAAAGACATCTTGGATGAGATCCGACTCGAGCGCGGTTACGACTTCGTCCCCTGAGCGGTAACCGTGCTGCTCGAAGAGCTTCCGCATGTCGCGATCGCCGAGGGCCTTGGCCAGAGCAAATCCGGCCTTCAGTCGCAGGGCCCGGTCACCGGCCAT # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 28566-31068 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 28566 29 79.3 32 GCTA.........AG.............. AACCCCGCCCCGGCGAGCCAGCCGGCGCCCGC 28627 29 96.6 32 .............A............... TACGCGCAGCAGCAGGTGTGTACGCGGGCACC 28688 29 89.7 32 G.......T....A............... GTGCTGACGGAACCGGAGCGGGAGGCGCTGGC 28749 29 96.6 32 G............................ GTGACGAAGACGATGCCCGCCCTGGTCGAGTA 28810 29 100.0 32 ............................. CGCGTCCAGATCCAGGCCGACATCGACCAGCT 28871 29 100.0 32 ............................. TACATCGACATCGCCTACTCGGCGATGGTCTG 28932 29 100.0 32 ............................. GCGAGGAGCGCGAGTTGACTCCGGATCAGCGG 28993 29 96.6 32 G............................ GTCTTCGGGTTGAGGCCGGCACCCGGCAGCTT 29054 29 93.1 27 G............A............... GCCCAGCCGTGGATGGCTTCGACGCGC 29110 29 86.2 32 A............AG.............C CTTTACGGCGTAAAGACCGGAGATCGAGAGAC 29171 29 75.9 32 G....TTTT.T........T......... CCGGGATGCAGGCCCTCGCCCCGGAGTCCCGG 29232 28 69.0 207 G.T.....T.TT...T.-....C.G.... TCGGCGGTCCTCGGCACCGCCGCGGCGGCCGGGTCGTTCCCGCGCGTCAGCCGGCGCGGGGCCCCTGGAATCTGCATCACCGGGAGAACCGTCGTACCGCCGTGACACGATTCACCCGCACGCAGCCCCTTGAGATCTGAACCTCCCTCAACCGCCGGGCATGGCAAAGAAAACGCAAAGCCGCCACAACGCTGCAGGTCGCGAAGC 29467 29 100.0 32 ............................. TTCCTCGGGCTGACGCGCCTGCTGGAGCTGAT 29528 29 100.0 32 ............................. TCACTGGGGTCCTTCGGGTCGGGGCTGTCGGC 29589 29 100.0 32 ............................. ATCACCGACGACCTGAAGGACGCGTTCAAGCG 29650 29 100.0 32 ............................. AGGGTGGCGTAGCGCAGGTAGTACGCACGGCG 29711 29 100.0 32 ............................. CCCGCAGTCCGGGCCGAACCGTTCAGCGCGTA 29772 29 100.0 33 ............................. GTACTGGCTGGCGAGGATCACGCGGCCCTTGGC 29834 29 93.1 32 .........C..................C CGGCCGGACGCCTCGACGGCTACCGGTTCCGC 29895 29 100.0 32 ............................. TGCTCGGTGACGTCGTACTCGGGCATGCCCAT 29956 29 100.0 32 ............................. CGCCCCTCGGGCCGGTTCTCCCCGGGCTCCAG 30017 29 96.6 32 .............A............... TCGCCGGCACGGAGGGCACGGAGGAAGGACGG 30078 28 82.8 32 G............AG.......-.....T CAATTTTCCCGTTTCCCGCATCCGAAGTGCCC 30138 29 79.3 32 G.T........C.AG.......G...... GGACTCGGCCGACTTGCCCAAACTGGGGCCGT 30199 29 82.8 32 G............AG.T.....C...... GTGACGTACTGGGTGCAGACGAGCTGCGGGTT 30260 29 96.6 32 G............................ GACCGCGCGGCAGTCGCCGAGCGCCCGGTGCC 30321 29 82.8 32 G............AG..C....G...... CAGCTGATCGAGGCTCAGCTGCGGGCGCACCG 30382 29 89.7 32 G............AG.............. GTGCGGCGCCGGGAGTGCCCGGGGACGCAGGA 30443 29 89.7 32 G............AG.............. TCGCCAGCGGTGCCGGACGTCCAGGCGATGAG 30504 29 89.7 32 G............AG.............. CTCATCCGCAAGGACAACGTCGAGCTGTACGG 30565 29 89.7 32 G............AG.............. TGGGGTGGCTTCAACCTGGGCGAGCCCCGGCA 30626 29 93.1 38 G.......T.................... ACACCCAGCCCGGCACCTGGGCCTGGCCGCCCCGAGTC 30693 29 89.7 29 G..G..................G...... GACTCCGAGACCGCGAACTGCAACTGCCA 30751 29 79.3 32 .CT..........AG..C...A....... AACGCTTCGACCGCGGGCCGTGACTCACTGGT 30812 29 96.6 17 G............................ GCGATCGAGCAGCGCGT Deletion [30858] 30858 29 93.1 32 G............A............... TAGGCGGCGGGTGTGCCGCTGCGGGTGCCGGG 30919 28 86.2 32 G............AG.......-...... AGGTCCGGCCGGGTCGGTCTGGCCTTGGGTCA 30979 29 93.1 32 G..................A......... CGCCGGATCCGGGGTCGGGCACGTCGACTGAT 31040 29 69.0 0 G..G....T.TT...T...A....T...A | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 39 29 91.2 36 CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CGTTCACCACGCTCCAGCGTTCCCCGCCATCGGGCGGGATCTCAACGATCAGCTGGTGATCGTGGATATCGCGGCCGTCAGGAAGGACAAACTGATGCCGGTGGATCGTGCTGTGGCAGCAGTCGATCCGGGCGACTTCCTTCCATTCTCCGTCATCCCACACCATCTGCATGATGGCGAAGAACGTGATCAAATCCTTGTAGACCTGCATGCGGATCCGGAGTTCATCCGTGTCCGTGATCTCGATGCGGGTGTTGGACTCGACCGCCGGAGGGCATGGAGGCGGCTTGTAGTGTGCCGGTTCGCCCGCACTCATGTCCACGACGCGGCCGCGCCGCTTGCCGCCGTTGTTTGCCATCCCACCGCCTGCCCTTGCACGTGAAGCTGGTGGGTCCTTGTTACACCGGGATCCAGTACCCTTCCGGCAGTTCACCCAATCGTGACGAACGACTCACCCCTTCGAAGGTGCCGTCGAGCTTGCGTTCTAGACCTGAGCACCG # Right flank : ATCGGCGGTCCTCGGCGGCCGACGTGGCGGCAGGGTCGTCCCCGCGCTTCAGCCCTGGAGCCTGCGCTCACCGGGGGCGTCGTCGTACCACCGTGACACGATGCCCCCGCACGCAGCCCCTTGAGATCTGAACCTCCCTCAACCGCCAGGCACTGCAAAGAAAACGCAAAGCCGCCACAACGCTGCAGGTCGCGAAGCCTCCTCCCCGCGCCAGCGGGGGTCAGCCGCCCCATTGGGGACCGGCCCCCGCTGGCAGCGACTCCTCCCCGCGCCAGCGGGGGTCAGCCGGGGGTGCGGAGGGCTCTGCAGGGCGTCCTGGCCTCCTCCCCGCGCCAGCGGGGGTCAGCCGGGCGCCCCGGCCGGGCAGAGGCCAAGGGCCTCTCCTCCCCGCGCCAGCGGGGGTCAGCCCCGGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTGCTCCTCGTGCTCTCCTCCCCGCGCGAGCGGGGGTCAGCCGGACCTCGCC # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.45, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [26-26] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 36383-39027 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================== ================== 36383 29 86.2 32 ...G..T...T..G............... TAGATCCGGGCCAGCTCAGCACGCAGCGAGAT 36444 29 96.6 32 ...................T......... CTGACGGCGCCGACGCCGCAGGCGCTTCTGTT 36505 29 89.7 32 ...T..........T.........G.... TCCGGATCGCCGGCGCGCTCGAACGCCTCCCG 36566 29 72.4 206 A.....T....T.GGT........G..T. TCGGCGGTCCTCGGCACCGCCGCGGCGGCCGGGTCGTCCCCGGGTTCAGTCGGGTGCGGGCCTCGAGGTCTTCGCTCACCGGGGGCATCGTCGTACTGCCGTGACACGATGCCCCCGCATGCAGCCCCTTGAGATCTGAATCTCCCTCAACCGCCAGGTACGGCAAAGAAAGTGCAAAGCCGTCATAACGCTGCAGGTCGCGAAGT 36801 29 100.0 32 ............................. CTGCTGCTGCCGATCGCGTTCCGCGGCTCGGA 36862 29 100.0 32 ............................. TTGCCGGTGATCTGGAGGACGGTGCCGGAGAC 36923 29 100.0 32 ............................. CCCGACGCCGCCTTGAACGTGAAACCGATGAC 36984 29 100.0 29 ............................. CCCATCGCCCACCGGACGCCCACGCCTGC 37042 29 100.0 32 ............................. ACCCTCGACCCGAACCGCGCCGTCCTCATCCA 37103 29 100.0 32 ............................. GTCACCGGTTCAGAAGTGCACACGACGTCCAC 37164 29 100.0 32 ............................. GCACTGCGGGCCGCCCGGGACGCGGAGCGCGA 37225 29 100.0 32 ............................. CTGGAGGCACCCGAGGCCGACGAGGACCAGGC 37286 29 100.0 32 ............................. AGGTGATGCACCGAATGCATGCGGCCGGCGTC 37347 29 100.0 32 ............................. TCGATCCGGATCTGGGCCCCGAGGCCCGGCAA 37408 29 100.0 32 ............................. ATGAACTTCACGCCGAGTCACGACCGGTGGCG 37469 29 100.0 32 ............................. GTCATGAGGTCGCCGTCGAGGTCGTTGACGGT 37530 29 100.0 32 ............................. CTGAGCCGGACGGTGCGGACCGCGCCGGCCAG 37591 29 96.6 32 .............G............... GTGAAGGGGTAGCGGGGCTGGTCGGTGCTGTC 37652 29 89.7 32 CC...........G............... GTGTGCAGGACGTCAGACAGAGTGGCCATGGT 37713 29 96.6 31 C............................ GAGACTGCTGATGCCCCCGGCCCTTGACCTC 37774 29 96.6 32 ............................T AGGTCGGCATAAAGTTCGTCGGGGCCAATTTC 37835 29 96.6 32 C............................ CCACTTCCCGAGCGGGAAATTACCGTTCTCGC 37896 29 96.6 32 C............................ CTATTCGGCGCGCACACCCCCGACGACGTGGA 37957 29 96.6 32 C............................ ACTCCGGCGTCGCTGGCAGTGCGGATGCGCTC 38018 29 96.6 32 C............................ ATCCCCGAGGCCTACGAGACGATCGAGTGGGC 38079 29 96.6 32 C............................ CCCTTCTTCACCGCGAGTCCGTAGACCGCGTT 38140 29 96.6 32 ..............G.............. GAGGGCCGGAAGGCCGGCCAGCGCACCCCGCA 38201 28 93.1 32 ..............G..-........... CCGCCACTGAGGCCGATGGGGATGAAGCGCAG 38261 29 96.6 32 ..............G.............. CCGAGCGCTATTTGTTCCCCATGTTCGGGGAC 38322 29 89.7 39 .....TT.......C.............. CTGGCGCCGGAGCACCTGCTGACCCGCGGTCAGCTTCCG 38390 29 93.1 32 ...G..................G...... GCGGAGTCGATGCGCGTCAACTCGCTGGCCGC 38451 29 93.1 32 C............G............... CTCGCAGATCTGCTGCCGAGCCCGGAGAACGG 38512 29 93.1 32 C............G............... CCCACCGGCACCTGCCCCACCTGCGGGCGCAC 38573 29 93.1 32 C............C............... CGCACGACCCGCGGGTGAAGCTGCGCACGACC 38634 29 96.6 32 C............................ TCGAACTTCGCCGGGTCCACCACGAAGTAGTT 38695 29 93.1 32 C............G............... CTGCCACACGGTGCCGTCCCACTGATGGTGGC 38756 29 93.1 32 C............G............... GCGCGGTTCGCACAGTTCCGCAACGTCCCGGA 38817 29 93.1 32 ...G.........G............... CTAGTCGGGAAGTCGTCACTGGAGAAGTACCG 38878 28 89.7 32 ...G.........G...-........... GCGGCCCGCGCGGCCGGCTACGAGTGGACGGA 38938 29 89.7 32 C.....A......G............... CAGTCGTACACCGTCAACGCCGGCAACATGAA 38999 29 93.1 0 C............G............... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================== ================== 41 29 95.2 36 GTCCTCCCCGCGCAAGCGGGGGTCAGCCG # Left flank : CTCGGTGCCGGTGGCGGTCACGGCCCAGCACAGGTCGATCCGGGCGCGCTCGAGCGCGGCGCGTCCCCACTCCCGGATCCGCGAGGCGCGGCCGGATTCTGCCTCCGCGAGCCGCTCGCGCAGCCACTTGGGGTCGGCGAGTGCCTGGTCCATGGCCGCCTCGCCCAGTCCGGACGAGAGACCGCTTGTGTAGACGCGTAGTCGGCCTCGGATCCCCTGACCGTTGCGAGGTCCGGCCATCCCCACGTAGATGAGCGGCCCGGCCGGGCCGGAACGGGCGAGGTAGACACCGGGCTCGCGCGGCGCGACAGCCAGCGCCTGGTCCCAGGACACCCACGGTGTCCAGGCGGCCATCGACCACACGTCCTCCTGCAACGGGCCCGCTCTCCATTCACCGGTCGACTCAGTTTCCGTGGGCGAAACTCTACGGCCCGGGGAATGTCGAGGGGCAGGGGCCGGTGATTGGATCGCTGGTGGATCATCCAATGGCCTTCCTGAGC # Right flank : GGCCTGAACCTGCACGGCTTCGGCGTTCTCTCCCCCCAGCCGACACCTGTCGAGGCCCTGGTGCTGGGCATGCCCGGCAACCTTGATGTCTGGCCTGTCGCAGCCACCCAGTCCGGAGCTCACGGGTGCCCATCGCTGAGGCTTGCCCCGCGCTTGTGTATATAGAGGCCGACCCCGTCGCCCAACTGGCTGGGCGCCGCCGCGTCAGCGCGCTCCACTCACAGACCCCTGCAGCTCTCCGGCCCACAAGGCGGGAGATGCAGCCGGCATCCGGCGGGAGACCGCCAGTACGTGGCTTCGAAACCGCCGTACCACCTCATTTACGGAAGTTGGGGACACACGACCCCGACCCCGCATAGCATCGGCCTCGCCTAAAGGCACCATCGAGCACAGAGCGGAGTGGCCGAGGCATGAACGAAGCGCGCGCGTTGACAAAGGTCGAAGTAACGGGCCTGTTGGACCGATTCCACCACGAAGTTCCATTTCCCGAATCAGACTCA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [15-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 42443-43500 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK853998.1 Kitasatospora cheerisanensis KCTC 2395 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 42443 29 82.8 32 ...GAT.......AG.............. CCGGGCCCGGCCTGCACGTTGGTGACGGTGCG 42504 29 100.0 32 ............................. CCCTGCGGCCGGCCGCCGCGAACCTTGCCGTC 42565 29 89.7 32 G..G........T................ CCGGCCCGCCGGGGCGGAGAACCGTTGCTGCT 42626 29 100.0 32 ............................. GCGGGATGCAGGCTCTCGCCTCGGAGTCCCGG 42687 28 72.4 209 G.T.....T.TT...T.-......G.... TCGGCGGTCCTCGGCGCCGCCGCGGCGGCCGGGCCGGGTGGTCCCCGCGCTTCAGTCGGCGCGGGTCTGAAATCTGCATCACCGGGAGAACCGTCGTACTGCCGTGACACGATGCCCCCGCACGCCGCCCCTTGAGATCTGAACCTCCCTCAACCGCCAGGCACTGCAAAGAAAATGCAAAGCCGCCACAACGCTGCAGGTCGCGAAGC 42924 29 100.0 32 ............................. TACTGCGGGGCGCTGGTGTTGGTCAGCGACCA 42985 29 100.0 32 ............................. CGGTAGCCCAGGCCGCGCGGCTTCTCCCTGAA 43046 29 100.0 32 ............................. CTGCAGCGCTGGGACGAGTACATCGCTGGCGT 43107 29 100.0 32 ............................. CCGAAGCGGCGCGTCCTGAACCGGGTGGGTCG 43168 29 100.0 32 ............................. CCGACGCCGAAAAACTGGCCACGTGGATCATC 43229 29 89.7 32 G............AG.............. CGAGCCCACTCCGGCAGCATGCCCTCCAGGTC 43290 29 96.6 32 .............A............... GAGAGTGCCACCGGCAAGGTCCTCCCTGCGAC 43351 29 96.6 32 ..........T.................. GCGTGCCGCCGAAACGACGGCCGCCCGAATCA 43412 29 100.0 32 ............................. GGCACACTCGCCTCCTTCCTGGGCCGCAAGGG 43473 28 96.6 0 .................-........... | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 15 29 95.0 45 CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : TCGTAGAGTCGCTGCCGCGCGATGGCGGCCTCGGCCGCGAGGACGGAGACGGTGAGCTTGCCGTCGCTGCGGATGGGCTCGCCAGCGAGCAGGCGTGAGATCGCTGCGGCGAGGTCACGGGTCTCGGCCTGACAAGGTTGCTGGTCACGGGGCTGTTCCTGGGCTGGGGAGTCCTGGCCGGGCAGAGTCGTGCTCGGCAAGGCCCGTTCGTGCTCGGCAAGGTTGCTCTGGATGTTCTGCCGCAGCGGCTCGGGCATCCCTGGCATGCTGAGGTCCACTCGAAGCTGGTGGACGTGGCCGCTGTGATTTTGTCGGGTCATATGAGAGCCACTACTTCGGTGTGAACGGGAGCCGGGTGTAGACCGTTCGTGGCGGTGGGGTGCTCGCCCGGGACGGGTGCTCTTCGGTGAGTTCGGGGGCCACTTCGGCGGGAATGGGAGCCGCTGATCGGGTGACCGGGCGGGTCTGGGCGAAGTGTCCGAGAAGACCGGGTCAGCGTC # Right flank : GGGCGCGCTCGGCGCGTTCCTCGGTCGCGCCGAGTCGTCGCCGCGCGAGCACCCGACCCTGCGTTGGGAGGAGCCGCCCAGCTCCGCAACCGGCTGCGGCTGCCCGACGTTCTGGCGGGCGTCACCAATGGACTCAGCACGGGTGGTGACCGACAGCAGGTCACGCGGCGCCTCGCACGGCGGCCGGTGCCTTGGCCGCACGGCGGGCGGTGGTCAGCGGGGTGGCTCCGGCTCGCTCGGCGCGGGCCCGCAGGAGTGCGGCGCGGTGCCGCTGGCGCTGCTCGCGGGCGTGGGCGGTCGCGGCCGCCAGCTGCGGGTCCTCCTCGACCGGCAGCCAGTCGGTGGTCTCCGGCTCGCGGAGGCGGTTGTAGTGGCGGCGCAGTATCTCCTCGCGTTCCGCGGCGGCCTCCTCGATGGCGGCCTGGCGGTCGGCGGTGAACTCGGTCATCTGCTGGCGCAGCTGCCGGTAGACGCCGCTGTCGGCCACGGGGTGCAGGGCT # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //