Array 1 884-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000186.1 Fischerella thermalis WC439 NODE_569_length_2328_cov_43.131874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 883 36 100.0 54 .................................... GCAGCCGCCACATCTTTCGTCGATACCAAAACATCNNNNNNNNNNNNNNNNNNG 793 36 100.0 43 .................................... TCCAGGAGGATCACCTCCTGGAGGATCGTCTCNNNNNNNNNNG 714 36 100.0 47 .................................... TGCAACGCCTTCGGTGTAGGCCGGGATGCCTAGGCGANNNNNNNNNN 631 36 100.0 34 .................................... ACTGGCATTGAGGTAGGGCGCGATCGCAAAGATG 561 36 100.0 34 .................................... GCCAAAAAAGATTGCCGAGAAAATCGGCAATCTG 491 36 100.0 42 .................................... ATCCCAATCGAAGACTATTACCTCGAACTGGNNNNNNNNNNG 413 36 100.0 34 .................................... GCTAGTTCCTGGCAGAGGCGAGGGAAGCTTTGCG 343 36 100.0 36 .................................... GAGATCTCCATCGCCGATGGCTGCGATCGNNNNNNN 271 36 91.7 51 NNN................................. ATCGGCAAAGATTCTCTCCAGCCCCCTAGGTAGCGCCANNNNNNNNNNNNN 184 36 97.2 38 N................................... TTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAGG 110 36 100.0 38 .................................... ACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCAG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 12 36 99.1 41 TTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTTCAATTAATCCCTATTAGGGATTGAAACGCTTTGTTTCACAAAAGGCGATCGCGTCCCTAGTNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCAAACCAGTGCCAGCACATGCCCGATCGCCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCTTGCCCAAATCGGGTATGTGGGGGAGTGGCAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTATTATTAATATTGATATTAAGCATATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1755-1129 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000186.1 Fischerella thermalis WC439 NODE_569_length_2328_cov_43.131874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1754 37 100.0 35 ..................................... TCATATAGGGTAGATGAGAGGGTACAAAGCCAGCT 1682 37 100.0 39 ..................................... AATGCTTCCCTCTCAAAACTTTGTCAGCATNNNNNNNNN 1606 37 97.3 34 N.................................... GAATTCCGACATCGCATTCAGTTAGCGCTCGCGG 1535 37 100.0 33 ..................................... CAGTATTCTCTCTCCGGAGAAATCTGCACACTT 1465 37 100.0 41 ..................................... TTGCCGATGACTATGTCGTAGCTCTCCCATCNNNNNNNNNN 1387 37 100.0 44 ..................................... GCTTTGTTTCACAAAAGGCGATCGCGTCCCTAGTNNNNNNNNNN 1306 37 100.0 33 ..................................... TCAAACCAGTGCCAGCACATGCCCGATCGCCTG 1236 37 100.0 34 ..................................... CCTTGCCCAAATCGGGTATGTGGGGGAGTGGCAG 1165 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 99.7 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCAAATCTCCAGGGAACCGGCCCCTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCGCACCCTGTGCCAGAGCTTGGGCGTGGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTCGAACTGGTTTATCACCAAGGTCGCCGCCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCAACGAATGGGGATTGGGATATTAGCCAGATATTCTTTTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTAATCGGATGTCGCTGGCACAATGCGTGGNNNNNNNNNNTAGATAACCTCAATTCATCCCTCTATTATGCAACGCCAATCCCTATTAGGGATTGAAACGAGGTATTTTAGAAGTGACTTCAGGATCTTCAAGGTANNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTCAGACAGTCCATGATGTCAAAGAGGCTCTTTGG # Right flank : ATTATTATTAATATTGATATTAAGCATATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCAGCCGCCACATCTTTCGTCGATACCAAAACATCNNNNNNNNNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCAGGAGGATCACCTCCTGGAGGATCGTCTCNNNNNNNNNNGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCAACGCCTTCGGTGTAGGCCGGGATGCCTAGGCGANNNNNNNNNNTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 2369-1973 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000186.1 Fischerella thermalis WC439 NODE_569_length_2328_cov_43.131874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2368 37 100.0 34 ..................................... CTAGAATACATAGCCGGAAAAGCTGGGGCTAGGA 2297 37 100.0 33 ..................................... ATCCTGCCAAATCTCCAGGGAACCGGCCCCTTG 2227 37 100.0 31 ..................................... TCGCACCCTGTGCCAGAGCTTGGGCGTGGTG 2159 37 100.0 33 ..................................... GTCGAACTGGTTTATCACCAAGGTCGCCGCCTT 2089 37 100.0 43 ..................................... GCCAACGAATGGGGATTGGGATATTAGCCAGATATTCTTTTTC 2009 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : TTAATCGGATGTCGCTGGCACAATGCGTGGNNNNNNNNNNTAGATAACCTCAATTCATCCCTCTATTATGCAACGCCAATCCCTATTAGGGATTGAAACGAGGTATTTTAGAAGTGACTTCAGGATCTTCAAGGTANNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTCAGACAGTCCATGATGTCAAAGAGGCTCTTTGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCATATAGGGTAGATGAGAGGGTACAAAGCCAGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATGCTTCCCTCTCAAAACTTTGTCAGCATNNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAATTCCGACATCGCATTCAGTTAGCGCTCGCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAGTATTCTCTCTCCGGAGAAATCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 1-1105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000188.1 Fischerella thermalis WC439 NODE_636_length_4075_cov_40.300858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================== ================== 1 36 100.0 35 .................................... CCAGTGAGATAGGGGTGGGAAGATTATTCAGTATA 72 36 100.0 37 .................................... CTATTTGATTGCACATTCCCCCAACCAAACTAGTCTC 145 36 100.0 56 .................................... NNNNNNNNNNGATTGAAACTGCTTCACCTCCATCATCATTATTGGCGCTGAATCGG 237 36 97.2 39 ...................................N NNNNNNNNNGTACCTTGAATAAGAATGGAATAGGAAAAG 312 36 100.0 34 .................................... CTCAGATCCTAGAAGTATTCCGGGATGCTGGGCT 382 36 100.0 37 .................................... CAGCGCGTGGAGAAGCGCCGCCACGGCATCATCGCCA 455 36 100.0 43 .................................... CNNNNNNNNNNTTCAATCTGCAATCATGATTTTGAGATAAGAG 534 36 100.0 42 .................................... NNNNNNNNNNAGGTCACCTCAGTGAGTGGACTGACTCTCCAC 612 36 100.0 33 .................................... CACAGGCAGCACAAAGGCATTTAGGCAAGTCTT 681 36 100.0 41 .................................... NNNNNNNNNNACGAACATATTCCATGTTCGGCGACTTTAGT 758 36 100.0 42 .................................... CTGTCTAAGGCGTTTGGCGGCTTTTTTACTTATCTGGCTAAT 836 36 97.2 45 ...................................N NNNNNNNNNTAACAGCCCGCTCTATTTCTTCATTTTGGTTTTGAG 917 36 100.0 36 .................................... CATCGGTATCTGGACGGTATAACCCGAATACCGCCT 989 36 100.0 45 .................................... NNNNNNNNNNCTTGTTCGGCGAGTGAGAGACCGAAGCCTTGGGTT 1070 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================== ================== 15 36 99.6 40 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : | # Right flank : ACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCTGTTTCGGGGCAGCCGTGCCCCCACAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCATGCCGTCGTCGCGCACAACCATAGAATTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGCTCCACAGAACACCGCCCCAGACCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTATGGATTTGCGATCTGCGATCGCGGTATAGGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGCCCCCATCTATAAAGATTTATCGCGCATCCAGGTTGCAACTTAAATTAATCCCTATTAGGGATTNNNNNNNNN # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 1280-1743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000188.1 Fischerella thermalis WC439 NODE_636_length_4075_cov_40.300858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1280 36 100.0 34 .................................... CGCCATGCCGTCGTCGCGCACAACCATAGAATTT 1350 36 100.0 36 .................................... NNNNNNNNNNGCTCCACAGAACACCGCCCCAGACCA 1422 36 100.0 34 .................................... CTATGGATTTGCGATCTGCGATCGCGGTATAGGT 1492 36 100.0 36 .................................... CTAGCCCCCATCTATAAAGATTTATCGCGCATCCAG 1564 36 88.9 34 ................................NNNN NNNNNNATGTTCGGGAGAATGAATCCCCAAAGAC 1634 36 100.0 38 .................................... CAAACTCAGCGACACTAAAAATACAGCAAATATACGCT 1708 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.4 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : ATTAGGGATTGAAACTGTCTAAGGCGTTTGGCGGCTTTTTTACTTATCTGGCTAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTAACAGCCCGCTCTATTTCTTCATTTTGGTTTTGAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCGGTATCTGGACGGTATAACCCGAATACCGCCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCTTGTTCGGCGAGTGAGAGACCGAAGCCTTGGGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCTGTTTCGGGGCAGCCGTGCCCCCACAG # Right flank : ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACTTAAATTAATCCCTATTGGCGTTGCTGAATTTGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGATTCAGCAACGCCAAATAAATCCTTATTAGGGATTGAAACTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 1-1239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000192.1 Fischerella thermalis WC439 NODE_690_length_3058_cov_44.672989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1 37 100.0 35 ..................................... CATTATTGCCGGAGCAAGAAGGACAACTCATTACT 73 37 100.0 43 ..................................... CTCCCTAAAAATCGGAAAAAGTCCCACGTTCTGGAAAAGAAAA 153 37 100.0 38 ..................................... CATGTCATTGACTATATCGACTCGACCCCTGTCGACCT 228 37 100.0 36 ..................................... TTGAAGGAGGCTTAAACCCTTACCCCACAAGGGAGA 301 37 100.0 40 ..................................... CATTTGTACTTGGAGTGCTTCCATCGAATTCGAGATGGCG 378 37 100.0 42 ..................................... NNNNNNNNNNGTCAGCGACTCGTCGATGATATAGCTCGATCG 457 37 100.0 36 ..................................... TTTCTACGCCCCAAAAAGAAAGCGTAGGACAATCAG 530 37 100.0 36 ..................................... GAGTATCTTGAAAACCACCTCACTGCCTTCGGAACC 603 37 100.0 40 ..................................... AGTGAAAATAACAGCTATATTGTGGACACCCAAAATTCAC 680 37 100.0 36 ..................................... CCCTGGCGCTCCGCTCTATCTGTTTAGATGATCGCG 753 37 100.0 37 ..................................... CTTGAGGACTTCTTGGGTGATGTTGCAGTCGGATCGG 827 37 100.0 43 ..................................... CAGCCTGCCGCCATCCGGCTCTATTTATCTCGGCATCGACCCC 907 37 100.0 33 ..................................... GGCTGGGCGGTGCAAGTATCCCGCCGGCACCAC 977 37 100.0 38 ..................................... TCTCAGTGACTCCATGTATTCCTGGACATAGTCTGGGA 1052 37 100.0 44 ..................................... CNNNNNNNNNNTCCTTGTATGTGCCGAAGCACACGGGTTCTATC 1133 37 100.0 33 ..................................... GCATTTTTTCTTTGCCAGTATCCGACCACTTCT 1203 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 17 37 100.0 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CNNNNNNNNNNATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 3-489 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000195.1 Fischerella thermalis WC439 NODE_928_length_6767_cov_41.567165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3 37 100.0 37 ..................................... AGCAGGTTAGCTCCAGCGGCGGCGCTGGAGCTTTTGT 77 37 100.0 37 ..................................... GGGATAGCGATCGCACCACCCGCGATCGCGTGCGAGA 151 37 100.0 35 ..................................... CTGTGCAGGCAGCGAACGCCACATCTGAGCAGCGA 223 37 100.0 42 ..................................... NNNNNNNNNNCCGCCTCCTCTAGCTCATCGGCGAAGTCCGGA 302 37 100.0 45 ..................................... NNNNNNNNNNTAAGGATCTGGAAGAGCAGCAAACCCGCTACTACC 384 37 100.0 32 ..................................... GAGCAGTTGTCCAGAATGCCTGCCGCGTTCCC 453 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGG # Right flank : CTTTCTTGTACAGCGACACGAATCTCTCCATGTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCTCCACGAGCTGATGCCATCCGGGCAGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGTTTCTCTTCGATAGTGATTAGCCCTGAACTCTGTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCTTCGATGGGAGGATAGCGAATGCCTCCGGCACGCTCCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCGCCCAATCCGTGGTGGAAGGTGCTTTGCGCCAAGGGAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAATTCAGACTTGATCTCAACCATCGAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 682-3550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000195.1 Fischerella thermalis WC439 NODE_928_length_6767_cov_41.567165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 682 37 100.0 39 ..................................... TTGTTTCTCTTCGATAGTGATTAGCCCTGAACTCTGTGA 758 37 100.0 42 ..................................... TTCTTCGATGGGAGGATAGCGAATGCCTCCGGCACGCTCCGC 837 37 97.3 48 ....................................N NNNNNNNNNCGCCCAATCCGTGGTGGAAGGTGCTTTGCGCCAAGGGAG 922 37 100.0 31 ..................................... CAATTCAGACTTGATCTCAACCATCGAACCC 990 37 97.3 37 ....................................N NNNNNNNNNCCCTTCGAGGTCTGGGCGATCGCACCAT 1064 37 100.0 37 ..................................... GATCGACTCGACGAATCTCTTTCTCGACTCCCCCATC 1138 37 100.0 43 ..................................... CACGGCTTGATCCACGCCGTAGTTCTGAGCCTGATCGAGCGAT 1218 37 97.3 38 ....................................N NNNNNNNNNGATAAGACTAAATATCATCGGCTCTCGCC 1293 37 100.0 36 ..................................... ACTGATCACCTCATCGATGAGTGGGATCGGCTCGAT 1366 37 100.0 34 ..................................... CGAGGCATTCAATCGCTTCAAGGAAGAGATTCAG 1437 37 100.0 33 ..................................... GCTCCCAAATCACCTGGATTCTGCCGGAGAGGG 1507 37 100.0 32 ..................................... GAACCGGACTTGACTGAAGGCGATCGCGTCGA 1576 37 97.3 43 ....................................N NNNNNNNNNATCCCCAGAGAGAGCGATGCCTGGATCCCATCGC 1656 37 100.0 38 ..................................... GAGGCGGTAGTTAGTTAGCTGCGCTGCCAGCCTTGGAG 1731 37 91.9 37 ..................................NNN NNNNNNNGATCGCGCACTAACTGATTTAAACCAGCAC 1805 37 100.0 35 ..................................... TTGCGATCGGCTGGGGGCAAATCGAGGCACAGATC 1877 37 97.3 39 ....................................N NNNNNNNNNTTCATTTCGCTATTCTTCCCGGAGAGGAAA 1953 37 100.0 35 ..................................... AAGCGAACCCAAGGACACGCTGGAAACGACTACTC 2025 37 100.0 47 ..................................... TCANNNNNNNNNNCTGGAGTCCTACAAGACCGCCGAACGCAAACAAA 2109 37 100.0 40 ..................................... NNNNNNNNNNCTAGCCTAGCGCACCCAAAAGAAAAGCGCT 2186 37 100.0 35 ..................................... GCCTTGCAAGCAGAATCCCACCACATCGCCTACCT 2258 37 97.3 44 ....................................N NNNNNNNNNGTGGCACCACTTCTACTACCCCCATCACGAAGAGT 2339 37 100.0 33 ..................................... ACAATCCCGATCTGCCCGATGCCGAGAATGCCC 2409 37 97.3 36 ....................................N NNNNNNNNNCGACCATGATATGCGATCGCCCACCGC 2482 37 100.0 35 ..................................... AGATATCTCAACTAAGGAGCAACCATCATGAAAAA 2554 37 100.0 37 ..................................... GAGTCCCCAACAAAGATCAGGAAGATCGCGTGATGGA 2628 37 97.3 42 ....................................N NNNNNNNNNTCTGGAAGACTTAACGAAGAATGGGCAGGTATC 2707 37 100.0 33 ..................................... TGCCATCGACCAAGAGGCGATCGCTCACCCACC 2777 37 100.0 33 ..................................... TTTATCCTTCCCGGCTCGTGGCGCATCCGGTGG 2847 37 100.0 34 ..................................... GGGAGTCCTAGTTCTTTGCAGGCAGCACGGTAGA 2918 37 100.0 34 ..................................... CGGATCTTTCCCCAGAATCGCTGGGGGGAGGGGG 2989 37 100.0 39 ..................................... CAACCTCTACGACCAAAGCTCCATCGCCGAGCGCCTCGA 3065 37 97.3 41 ....................................N NNNNNNNNNAGTGTAGCGACGAGCGACGCGTCCGTCAATCG 3143 37 100.0 35 ..................................... TTTCTCGTCAGCGAACGCGCCACCGACAGTTACCA 3215 37 100.0 40 ..................................... NNNNNNNNNNCGGTCAGCGCGTGGAGAAGCGCCGCCACAG 3292 37 100.0 34 ..................................... CCGGAGCAGCGAAGCTCCGCGTTCGCTGGCTGCA 3363 37 100.0 41 ..................................... NNNNNNNNNNACCACTATCCGGTAGCACTCATCCGATTTGA 3441 37 100.0 36 ..................................... TGAAGCTTAATGACAGTCATTGCTTGACTCCAAATC 3514 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 39 37 99.2 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGAAACCTGTGCAGGCAGCGAACGCCACATCTGAGCAGCGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCCGCCTCCTCTAGCTCATCGGCGAAGTCCGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNTAAGGATCTGGAAGAGCAGCAAACCCGCTACTACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGCAGTTGTCCAGAATGCCTGCCGCGTTCCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTCTTGTACAGCGACACGAATCTCTCCATGTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCTCCACGAGCTGATGCCATCCGGGCAGCA # Right flank : CCACACTCCGGCAAGTTCTACCGCGTCCGGTGCGGCGATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCATGTGGCTCTCGCTCATTGCCACGCCTGCAAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCGGAGCGATTACGCAACTGGTCGGGATGCGCCCCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTGGACAATCAATCATCATCATCCCAAAAGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCAAGGTTTGGCAGATCCTCTCCTAGGAAGGCTTGTTGCAACTTCAATTAATCCCTATTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 3800-4791 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000195.1 Fischerella thermalis WC439 NODE_928_length_6767_cov_41.567165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3800 37 100.0 38 ..................................... TTCGGAGCGATTACGCAACTGGTCGGGATGCGCCCCTG 3875 37 97.3 40 ....................................N NNNNNNNNNTGGACAATCAATCATCATCATCCCAAAAGAA 3952 37 100.0 35 ..................................... GCCAAGGTTTGGCAGATCCTCTCCTAGGAAGGCTT 4024 37 100.0 34 ..................................... CCGTCTTCGGTCACCCAGCAAGAATCAGAAAGCA 4095 37 100.0 31 ..................................... CTGCCACTTTATGTGCTGAGTATCCAGCCGG 4163 37 100.0 32 ..................................... CCAGACCCCCAACCAGGACAGGAGCCATCACT 4232 37 100.0 39 ..................................... GACTGGATCCGCTTCACAAATACATCGACGCGATCGCCC 4308 37 100.0 40 ..................................... CTAGTTATGGGGGCGATCGCGCTTTTCTTTTCTTTTGGAG 4385 37 100.0 36 ..................................... ATTCTCACGTAGCTTTTCCCTGACCGCGTCGAAAAT 4458 37 100.0 34 ..................................... CAACCGCCTCTATTTAGATGAGAAAGACCCAGCG 4529 37 100.0 37 ..................................... TTGGCTTCTGAGATAGTGGTACAGGTCTAGAAATTGG 4603 37 97.3 40 ....................................N NNNNNNNNNCGCTCCCTTGGATTTGGGCGTAGTACACCTG 4680 37 97.3 38 ....................................N NNNNNNNNNCTCCTCGGCTCCCCGCCGAATGGTACCCG 4755 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.4 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTCAATTAATCCCTATTAGGGATTGAAACCCGGAGCAGCGAAGCTCCGCGTTCGCTGGCTGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNACCACTATCCGGTAGCACTCATCCGATTTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGAAGCTTAATGACAGTCATTGCTTGACTCCAAATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACACTCCGGCAAGTTCTACCGCGTCCGGTGCGGCGATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCATGTGGCTCTCGCTCATTGCCACGCCTGCAAAG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGCGATCGCTCCCCTACCTATTCTCCGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCTCTTTCTCGTAGTATCTCAGAACCGACTGGGAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCACCTCCCTACGCCGAGATCTTTATCGATCTGGCACAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGGGCGGGGACAAAGCGCGATTCGGCAGGGACAAAGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGATCGTTGCAACTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 4 4989-6273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000195.1 Fischerella thermalis WC439 NODE_928_length_6767_cov_41.567165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 4989 37 100.0 37 ..................................... TTCTCTTTCTCGTAGTATCTCAGAACCGACTGGGAGG 5063 37 100.0 40 ..................................... GCACCTCCCTACGCCGAGATCTTTATCGATCTGGCACAAG 5140 37 100.0 103 ..................................... CCAAAAAGTTCGCGCAGCGTGCCGGAACGGGCGGGGACAAAGCGCGATTCGGCAGGGACAAAGATTGAAACCCAAAAAGTTCGCGCAGCGTGCCGGAACGATC 5280 37 94.6 35 ...................................NN NNNNNNNNCGCTTTTTAGAGAGTCGAGGGAGACCC 5352 37 100.0 34 ..................................... GCGATCGTAGGCGGCGTAGATCTCCAGTTCCGGC 5423 37 100.0 39 ..................................... GAAAGAGCTGAGCGAAGATTTGGGACAATCCCAGCAGAA 5499 37 97.3 40 ....................................N NNNNNNNNNGCCTTTCCCGCTTCCCGTCTTTGTGATGATG 5576 37 100.0 34 ..................................... TCCTACGGAAATCTCTGGATGAGCGGTCGAGCTA 5647 37 100.0 36 ..................................... AAAACTACCACCGGGTGCTTCCTTTTTGAGTTGCGT 5720 37 100.0 38 ..................................... ANNNNNNNNNNGATCCCTTCCCCCTGCCAATGACACCT 5795 37 100.0 42 ..................................... GAAGCCATCTTCCTGCCATTCGATACGGATGGTCGATTGCAG 5874 37 100.0 35 ..................................... GCGATCGCTGGAGATGGAGTACATCTCCGGTGGCG 5946 37 100.0 34 ..................................... CCATTGTGGGTGGCACGCGATTTCTCTAATAGGG 6017 37 100.0 34 ..................................... GTTGCAAGCGATCGCCTTGGCGAGGGAACCGAGT 6088 37 100.0 40 ..................................... TTCCGAAGAGACTATGTCGGCGACTCTTTTCGCCAGGGAA 6165 37 100.0 35 ..................................... TTGGCTTCTGAGGTAGTGGAATAGGTCAAGGAACT 6237 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 17 37 99.5 41 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGAAACCAACCGCCTCTATTTAGATGAGAAAGACCCAGCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGGCTTCTGAGATAGTGGTACAGGTCTAGAAATTGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCGCTCCCTTGGATTTGGGCGTAGTACACCTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCTCCTCGGCTCCCCGCCGAATGGTACCCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGCGATCGCTCCCCTACCTATTCTCCGGG # Right flank : CGCCTCCATACCACGTAGTGCCCACCAGCAGCGGGCACCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTGCATCGAGAACCCCGATGGGCTGCGCCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTATGTCAATGACCTCGATCGTTCTTAGCTCTGCCGTTGCAACTTCAATTAATCCCTATGGTGTTGCATAAATGCGGGATGAATTATGCAAATACTNNNNNNNNNNTTGTAGGCTGGAATACATTTAGAAAAATCGCGTGCCGTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 5 6592-6793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000195.1 Fischerella thermalis WC439 NODE_928_length_6767_cov_41.567165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================================================== ================== 6592 24 100.0 47 ........................ TAGGGATTGAAACTATGTCAATGACCTCGATCGTTCTTAGCTCTGCC 6663 24 100.0 83 ........................ GGTGTTGCATAAATGCGGGATGAATTATGCAAATACTNNNNNNNNNNTTGTAGGCTGGAATACATTTAGAAAAATCGCGTGCC 6770 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================================================== ================== 3 24 100.0 66 GTTGCAACTTCAATTAATCCCTAT # Left flank : CAACTTCAATTAATCCCTATTAGGGATTGAAACTTCCGAAGAGACTATGTCGGCGACTCTTTTCGCCAGGGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGGCTTCTGAGGTAGTGGAATAGGTCAAGGAACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCTCCATACCACGTAGTGCCCACCAGCAGCGGGCACCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTGCATCGAGAACCCCGATGGGCTGCGCCAT # Right flank : TAGGGATTGAAACC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 143224-143942 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 143224 37 100.0 41 ..................................... TTGATCCTCCCCGGTTCGTGGCGCATCCGACGGATGAGTAG 143302 37 100.0 38 ..................................... TCCGATCGCGGCGAGAGACCACCCAGCTTCGAGCACGA 143377 37 100.0 34 ..................................... CCAAAAAAAGATGACTGTATCTCATCTATCGAAA 143448 37 100.0 52 ..................................... NNNNNNNNNNNNNNNNNNNNNNTTCTTTGGTACTACTACGACTAGTACTGCA 143537 37 91.9 38 ..................................NNN NNNNNNNTTTGGAGATAGGCAACAACTGCAATTGGCTG 143612 37 100.0 41 ..................................... TTCTACGATGAAGATTGGCGGGCAAACATAGTCCCCGTCGG 143690 37 97.3 28 ....................................N NNNNNNNNNAAGGCTTCTGAATTGAGCA Deletion [143755] 143755 37 100.0 37 ..................................... TGCCATGGCTTGACTCCTAGGTCTATTCCCACTAGCC 143829 37 100.0 40 ..................................... ACGATCGCTGCCCCAAATCTGCGTTTCCGCTCTGGGCATG 143906 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 10 37 98.9 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCNNNNNNNNNNCATTTAATCCCTAGAGGCAGAGCGGCGCGCTGAATC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCTCGAGAGCCGGCACTGAAATCGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATCAAGAGCATCGATACACCCCTCGTACGTAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNCTTCCGAGTGCGCTCCTCCTCTATGTGAGAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGATCGCATGAAAATGCCGTACCAAAATCGGCGTTGCATAATAGAGGGATGAATTGAGGTTATCTACNNNNNNNNNNTAATGAAGAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 144350-144168 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 144349 35 100.0 41 ................................... CTCTCACATAGAGGAGGAGCGCACTCGGAAGNNNNNNNNNN 144273 35 100.0 36 ................................... CCTACGTACGAGGGGTGTATCGATGCTCTTGATGGT 144202 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 39 TTCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Left flank : TAATTTAAGTTGCAACAGGCAGGGATCCCCAGCTTGGTTGCAGCTTGCCGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTCGGCTTTGAGCCGTGAGCAGTGGAATATTTCTGGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGGTACGCCAAGGTTCCGTGTTCGATATGCGNNNNNNNNNNAATCCCTAATAGGGATTAATTTAAGTTGCAACGCGATCGCGCTCGGACTATTCAGGCTGGTCGAGGAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGAAGAAAAAGATTTCTATCTCAGGTACCTAGAGNNNNNNNNNNGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTTGGAGCCTGCCACATCCGAGAGCGGCTCTTCATTANNNNNNNNNNGTAGATAACCTCAATTCATCCCTCTATTATGCAACGCCGATTTTGGTACGGCATTTTCATGCGATCGCAGT # Right flank : ACGATTTCAGTGCCGGCTCTCGAGCCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCATGCCCAGAGCGGAAACGCAGATTTGGGGCAGCGATCGTGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGGCTAGTGGGAATAGACCTAGGAGTCAAGCCATGGCAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTGCTCAATTCAGAAGCCTTNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCCGACGGGGACTATGTTTGCCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 144467-145540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 144467 37 100.0 43 ..................................... NNNNNNNNNNCTCTAGGTACCTGAGATAGAAATCTTTTTCTTC 144547 37 100.0 35 ..................................... TCCTCGACCAGCCTGAATAGTCCGAGCGCGATCGC 144619 37 86.5 35 ................................NNNNN NNNNNCGCATATCGAACACGGAACCTTGGCGTACC 144691 37 100.0 35 ..................................... CCAGAAATATTCCACTGCTCACGGCTCAAAGCCGA 144763 37 100.0 34 ..................................... CGGCAAGCTGCAACCAAGCTGGGGATCCCTGCCT 144834 37 100.0 39 ..................................... AGGGAGACCGATTCCCCTCGGCATTGCAATACCCCTCGG 144910 37 94.6 39 ...................................NN NNNNNNNNCTCTCTCTTCTTTGGCTGCATCGGCGATCGC 144986 37 100.0 36 ..................................... GAGAATACTGCACAGATTTCTCCATATATATATAGG 145059 37 97.3 42 ....................................N NNNNNNNNNATTCTTCCGAGGTTGCCTTCTGTGGACGGTAGG 145138 37 100.0 36 ..................................... ACCATCAGCGAGTTCGCGCATTCATTCCGCGCTGGT 145211 37 100.0 37 ..................................... TAGGAGGCGCTAGAAGGTGGGTGTGGGGTGGCGCGCG 145285 37 100.0 37 ..................................... CGTGATAAAGCTTCAACCAATCCACTACCCACTCATT 145359 37 100.0 34 ..................................... AGGTCTGTTTCCACCACACTAGCGCAATGGGAGC 145430 37 100.0 37 ..................................... TGATTCCACCGCAGTCCAAAGATCGAAGGGCTTGGAA 145504 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 15 37 98.6 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCTCGAGAGCCGGCACTGAAATCGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATCAAGAGCATCGATACACCCCTCGTACGTAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNCTTCCGAGTGCGCTCCTCCTCTATGTGAGAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCGATCGCATGAAAATGCCGTACCAAAATCGGCGTTGCATAATAGAGGGATGAATTGAGGTTATCTACNNNNNNNNNNTAATGAAGAGCCGCTCTCGGATGTGGCAGGCTCCAA # Right flank : CTCGATTTTCGACTCCTGCGAATCTAAGGAGGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGCGAATTCCTCAAGACCGAGGGAGGAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGGTACTTCTCCCAGAAGGATGCTCCGAGCTTTTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCGCCAGAGAGATACCTCAATCCCTCTGGAGCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 145765-145946 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 145765 38 100.0 35 ...................................... GCGGTACTTCTCCCAGAAGGATGCTCCGAGCTTTT 145838 38 100.0 33 ...................................... CTCGCCAGAGAGATACCTCAATCCCTCTGGAGC 145909 38 97.4 0 .....................................N | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 99.1 34 CGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGGGTGTGGGGTGGCGCGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGTGATAAAGCTTCAACCAATCCACTACCCACTCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGGTCTGTTTCCACCACACTAGCGCAATGGGAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGATTCCACCGCAGTCCAAAGATCGAAGGGCTTGGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCGATTTTCGACTCCTGCGAATCTAAGGAGGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGCGAATTCCTCAAGACCGAGGGAGGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCCAAGGAGGCGGGCTATCTATCTCCAGCGATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTGGTACAGGATAAGCCTATGGCTATGCCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCTACGTGGTATGGGGGTAGCTCTCCGGATACCTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTCCGGACTCTTCTCTCATTCGGCAGCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGCCCACAGTAATGGCGTGAATATCCAGCGCCGAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGCCCATGGCTCCCCAAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 5 146160-146789 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 146160 37 100.0 44 ..................................... NNNNNNNNNNCTACGTGGTATGGGGGTAGCTCTCCGGATACCTA 146241 37 97.3 39 ....................................N NNNNNNNNNTCCGGACTCTTCTCTCATTCGGCAGCGATC 146317 37 100.0 36 ..................................... GCGCCCACAGTAATGGCGTGAATATCCAGCGCCGAG 146390 37 100.0 33 ..................................... GTGCCCATGGCTCCCCAAGAAGATAGCTGAAAG 146460 37 100.0 34 ..................................... TCGAATAGCGATGATGATGGGGGGCGCTCACCTT 146531 37 100.0 43 ..................................... NNNNNNNNNNCGGATGATCAATCATGCGATCGCCGCTGCCCGG 146611 37 100.0 34 ..................................... ATCTTCTCCGATACGGCACCTAGTACGCCGATCG 146682 37 100.0 34 ..................................... TTCGGCACTTATTTGTGCCTCCCCATCGTGATAG 146753 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 99.7 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGCGAATTCCTCAAGACCGAGGGAGGAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCGGTACTTCTCCCAGAAGGATGCTCCGAGCTTTTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTCGCCAGAGAGATACCTCAATCCCTCTGGAGCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCCAAGGAGGCGGGCTATCTATCTCCAGCGATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTGGTACAGGATAAGCCTATGGCTATGCCC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAGGCGATCGCCGACCATGTATCCCCTAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTATTCTCCTCGCCCTACCGTGGCGATCTCCCAGCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGGCGCCGCACTAGCAAGTACAGGCACCCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCCCTCGGCGACAATCCCTAGGTCTTCGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNAGGAGGATGCCCTCGAAATCAAGCGCTCCTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATAGGCAGCAAAGATCTCCAACTCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 6 146930-148708 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 146930 37 100.0 36 ..................................... GTATTCTCCTCGCCCTACCGTGGCGATCTCCCAGCC 147003 37 97.3 39 ....................................N NNNNNNNNNGGCGCCGCACTAGCAAGTACAGGCACCCGC 147079 37 100.0 33 ..................................... GCCCCTCGGCGACAATCCCTAGGTCTTCGAGCA 147149 37 94.6 39 ...................................NN NNNNNNNNAGGAGGATGCCCTCGAAATCAAGCGCTCCTA 147225 37 100.0 34 ..................................... ATAGGCAGCAAAGATCTCCAACTCCGGCATCGGG 147296 37 100.0 40 ..................................... ATTTGGGAGCGATTGTGGGCTGGCTACGATGGGCAGCAGA 147373 37 100.0 34 ..................................... CAGTATTCTTCGGGCAGAGAAATCTGCACAGATT 147444 37 100.0 42 ..................................... TCCCATGCCCTTCGCCGATTCCGGCAAAAATATCCAGCTCGG 147523 37 94.6 40 ...................................NN NNNNNNNNCCGAGGCTTGCCGATACCATTCGGAGAATCCG 147600 37 100.0 36 ..................................... GAAGCTTTATCACGGACATCATCATCGTTCTCCTTG 147673 37 100.0 52 ..................................... TANNNNNNNNNNTTTTCGATTGGGATTATTTCGGGCAGCTGGCAGGGTAGGT 147762 37 94.6 39 ...................................NN NNNNNNNNNTCGATAGACTTGACACTTCGGATACAGCAA 147838 37 100.0 34 ..................................... AACTCCCATCGGCGCAGATCATTTCTAATAAGCT 147909 37 100.0 48 ..................................... NNNNNNNNNNTCAGCTACGCTCGCCGTCGGTAAAGGAGGGGGCTGATG 147994 37 97.3 43 ....................................N NNNNNNNNNCTTTAGAGTTTGTGCGAGCTGGGCGCGATCGCTA 148074 37 100.0 38 ..................................... CGCGCTAGCTGGGTGAGTGCCGAGAGTGAGCAACCCTC 148149 37 100.0 40 ..................................... NNNNNNNNNNGGGGGGGCGTACACCCGTGGTGTGCACATC 148226 37 100.0 41 ..................................... CAGATCCGGGACGATTTCTTGGGAGAGATCCTGGAATGGCA 148304 37 100.0 37 ..................................... CCGCTACGCGTCTACGCGCTCCATTGCAAACAAAAAG 148378 37 100.0 34 ..................................... AAAACGACTTTTTGCCAAATCGCAAACAAAAAAG 148449 37 100.0 32 ..................................... TGTCTAGCGATCGCTGGCTGCACAGAACTTCC 148518 37 100.0 38 ..................................... ATCGGGCATACTTACGTCGGGATCACGATTGTGCGAGC 148593 37 97.3 42 ....................................N NNNNNNNNNCCTCCTCTTCTCCATATCGAATCCGAGCAGCGG 148672 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 24 37 99.0 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCATGGCTCCCCAAGAAGATAGCTGAAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCGAATAGCGATGATGATGGGGGGCGCTCACCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCGGATGATCAATCATGCGATCGCCGCTGCCCGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCTTCTCCGATACGGCACCTAGTACGCCGATCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCGGCACTTATTTGTGCCTCCCCATCGTGATAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAGGCGATCGCCGACCATGTATCCCCTAGC # Right flank : CTTTCACACCTGAATCGAGGTGCCTCAAACCCTTGTAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCGCTGCCGGACTCCACGTATCGGAAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTGACTGTTGTTCTGCTTGGAGGGCGATGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNCTAGCCGAGCATCGAGGCATGGATTGGCAGTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGGCACAACTCGACTTGGGAGAGGACGACAGTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGAGCCACAGGATCCCATTCTCTCCCATCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCGGGAGAAGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 7 148873-149550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 148873 37 100.0 32 ..................................... TTCTGACTGTTGTTCTGCTTGGAGGGCGATGT 148942 37 91.9 39 ..................................NNN NNNNNNNCTAGCCGAGCATCGAGGCATGGATTGGCAGTG 149018 37 100.0 34 ..................................... GTGGCACAACTCGACTTGGGAGAGGACGACAGTG 149089 37 100.0 32 ..................................... GGAGAGCCACAGGATCCCATTCTCTCCCATCT 149158 37 100.0 33 ..................................... TTCGGGAGAAGCTGCCAGCATCTCCATCAGCAG 149228 37 100.0 39 ..................................... NNNNNNNNNNCGATTCGATATCGATATTCATTTTGCATA 149304 37 100.0 29 ..................................... NNNNNNNNNNCAAAATCTTTCTCCCTGTG 149370 37 100.0 37 ..................................... GTCTGCCGCCAGCCACCGGCACCTACCCGGCAGCATT 149444 37 100.0 33 ..................................... TAATGGGTCTTAGACAACTCTTGTGGGGTCTTA 149514 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.2 34 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AAAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAAACGACTTTTTGCCAAATCGCAAACAAAAAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGTCTAGCGATCGCTGGCTGCACAGAACTTCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATCGGGCATACTTACGTCGGGATCACGATTGTGCGAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNCCTCCTCTTCTCCATATCGAATCCGAGCAGCGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCACACCTGAATCGAGGTGCCTCAAACCCTTGTAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCGCTGCCGGACTCCACGTATCGGAAAA # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCTACTCAGAAAGTTTTTCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTAATGCGTGGTGCATCATCACTCTACTTTGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCTGCTCCCATTCTATCGGGAAGGGGAGCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 8 149767-149946 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 149767 37 100.0 34 ..................................... GTAATGCGTGGTGCATCATCACTCTACTTTGGTA 149838 37 100.0 35 ..................................... TTTCTGCTCCCATTCTATCGGGAAGGGGAGCGATC 149910 37 89.2 0 .................................NNNN | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 96.4 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNCGATTCGATATCGATATTCATTTTGCATAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNCAAAATCTTTCTCCCTGTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTCTGCCGCCAGCCACCGGCACCTACCCGGCAGCATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAATGGGTCTTAGACAACTCTTGTGGGGTCTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCTACTCAGAAAGTTTTTCGATC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGATGCCCGTCGAGGTAGGCGATATGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGCCTTTGTTTCACCTGCGATCGGATGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNCCCGATATCCACGCCAAGGCGATCGCTTGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCGTTGCCCAGACCTATGCCTCGCCTATCGCGATCGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACNNNNNNNNNNCCATGCCCCAATCCCCGAAAATAAGTCTAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACCGATACAGTTCCCCGAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 9 150085-151456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 150085 37 97.3 36 ....................................N NNNNNNNNNAGCCTTTGTTTCACCTGCGATCGGATG 150158 37 94.6 39 ...................................NN NNNNNNNNCCCGATATCCACGCCAAGGCGATCGCTTGCA 150234 37 100.0 39 ..................................... GGCGTTGCCCAGACCTATGCCTCGCCTATCGCGATCGCA 150310 37 100.0 43 ..................................... ACNNNNNNNNNNCCATGCCCCAATCCCCGAAAATAAGTCTAAA 150390 37 100.0 35 ..................................... ACCGATACAGTTCCCCGACAGGGATCTTGCTAGGG 150462 37 100.0 31 ..................................... AAGCTAGGTAAAACTCGGACACTTCCGCAGG 150530 37 100.0 34 ..................................... TTGATCCCTAAATCAATGCCGATGCTGTGGTTTG 150601 37 100.0 35 ..................................... CTCGACGCTCTTCATCAGATTCTTCAGCTCTTCCA 150673 37 100.0 40 ..................................... NNNNNNNNNNCCATGCCTCGAAGCTCGCCCAGAGTAACGA 150750 37 100.0 36 ..................................... GGGGCGCGATCGCATCGTTCGTGGCGCAGCGATTCG 150823 37 100.0 35 ..................................... GCGATGCTTCCCGAAGAGTCCTCGAAGCATCTTTC 150895 37 100.0 43 ..................................... GATCTGGTGTTGCGGATTACTGGCGATCGCACACCCGATCCCC 150975 37 97.3 43 ....................................N NNNNNNNNNCTGACCAGAGATCCTTTTGTGTAATCTGCCCTAA 151055 37 100.0 39 ..................................... TGGAGGATGCCTTAGTGGAACTGAATAGTCTTAGGATGG 151131 37 100.0 34 ..................................... TTCTCTGCATAATCAGCTATCTGCTGCCTATGTA 151202 37 100.0 38 ..................................... NNNNNNNNNNGCGCGAGTACTAGGGGTGCGATCGCTGG 151277 37 100.0 34 ..................................... TTCTCCTTTAAAGCTTCTAATATCTGGGTGGATG 151348 37 100.0 35 ..................................... TTTTGAGGCGGTGGTTTGAGCGATATGGGAAAAAT 151420 37 97.3 0 ....................................N | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 99.3 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCTACTCAGAAAGTTTTTCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTAATGCGTGGTGCATCATCACTCTACTTTGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTCTGCTCCCATTCTATCGGGAAGGGGAGCGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGATGCCCGTCGAGGTAGGCGATATGCAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGACCCATCATCGCTCTTGAATTGAGTCAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATGTACGAAGTACGACATTCGATTTTAAGATTGGCATCTGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGCGTACCCGATCACGAATACTCTAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGCGTGCCTCCGTCGACTGCGCTGACGGTAAATACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTNNNNNNNNNNCCTCCGCTCTGATTAACCACAGTATTAGATCAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGTAGATTCCTTCACATCTTCCAGGAATTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 10 151577-153322 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000198.1 Fischerella thermalis WC439 NODE_1240_length_153806_cov_44.544327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 151577 37 97.3 40 ....................................T GTACGAAGTACGACATTCGATTTTAAGATTGGCATCTGAC 151654 37 97.3 35 ....................................N NNNNNNNNNGCGTACCCGATCACGAATACTCTAAT 151726 37 100.0 35 ..................................... AGCGTGCCTCCGTCGACTGCGCTGACGGTAAATAC 151798 37 100.0 44 ..................................... TNNNNNNNNNNCCTCCGCTCTGATTAACCACAGTATTAGATCAG 151879 37 94.6 38 ...................................NN NNNNNNNNGTAGATTCCTTCACATCTTCCAGGAATTGC 151954 37 100.0 32 ..................................... CCTGTAGCATGGATCTCACACACTTGAGAGCG 152023 37 100.0 34 ..................................... GCGGGGCATCGTAGCACTTCAGGCGAGCGATCGC 152094 37 86.5 32 ................................NNNNN NNNNNTCTCCGACCAGAGAAAACTGCACAGAA 152163 37 100.0 36 ..................................... GTGCGATTAGCGCGATCGCACTTGGAAGCCGGCTAC 152236 37 100.0 41 ..................................... ANNNNNNNNNNATGTTCTTTCTGTCATCACAGTCATGTCAG 152314 37 100.0 37 ..................................... GCTAAGGCAGACGAGGCAGACCGAGAGGACTACCTGA 152388 37 100.0 34 ..................................... CACGCCTTTCCCTAGCGAGGGATCCCATTCGCGG 152459 37 100.0 35 ..................................... GAATGCTAGGTGAATCTCCCGCCCTGGAATGTATG 152531 37 100.0 40 ..................................... NNNNNNNNNNGAAATGTTACCCACCGGATGTGTATCTACC 152608 37 100.0 43 ..................................... AGGGCATTTCATCAGTCCAGTGGTTTCCAAAAGCATCGGCTCA 152688 37 100.0 31 ..................................... CCTTTTCGAGGGAGATCCCAAAACCTGGACT 152756 37 100.0 41 ..................................... NNNNNNNNNNACCGATAGAGTAACTTGCCAGCCACTATCTC 152834 37 100.0 40 ..................................... GCTGTGCTGCCAATAATTCCTGCTAGTTGCACAGAATCAA 152911 37 100.0 34 ..................................... ATCTAAACCTCTCTCAACAGATCTTCCAAATCAT 152982 37 100.0 50 ..................................... NNNNNNNNNNTGCTTCCTGCCTCCCAACCAAATCCAACTACAAGCAGCGG 153069 37 86.5 36 ................................NNNNN NNNNNCGATGATTGACATTTATTTTCGCTCCTTGGT 153142 37 100.0 33 ..................................... CTTTCGTACTGCTTCTTCAATGGGTTGAGTTTT 153212 37 100.0 37 ..................................... CGCTTCCTGGTAGGAGACTCCGACGCGACTATATCGG 153286 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 24 37 98.4 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATTAGGGATTGAAACTGGAGGATGCCTTAGTGGAACTGAATAGTCTTAGGATGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCTGCATAATCAGCTATCTGCTGCCTATGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNGCGCGAGTACTAGGGGTGCGATCGCTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCCTTTAAAGCTTCTAATATCTGGGTGGATGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTTGAGGCGGTGGTTTGAGCGATATGGGAAAAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGACCCATCATCGCTCTTGAATTGAGTCAGA # Right flank : CGATCTCCACAAAATGCTTCGTGGAGAAGCCACCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTCCCACCGCGAGGTCATCCCACCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTCAAATGGCGCGACTAGGCTGGGCATGATAGCTAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCTTTCCTGATCAGGGTTCCTTGGGGGCGGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCCAGCTGCGCTGCCAGCTTCGGGGTGAAGATTTGTTGCAACTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 5591-4496 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000092.1 Fischerella thermalis WC439 NODE_140_length_7467_cov_43.620060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5590 37 100.0 40 ..................................... GCGCTAACAAGCTCCAAGCACTTCTCCGGCNNNNNNNNNN 5513 37 100.0 45 ..................................... TTTTGCCCAAACTGGAAGAGCAGGAAGGAGGCGATGNNNNNNNNN 5431 37 97.3 38 N.................................... GCACAGAATCAACAACACCATCATCGTTGGCATCGTAA 5356 37 100.0 37 ..................................... GCTCGGCGATGCGATTTTGTTGGAGTTGTAAAGAATT 5282 37 100.0 41 ..................................... GAATGAAGTCATATTTCTCTCCTGGTGTGANNNNNNNNNNA 5204 37 100.0 34 ..................................... TGGCTGATTCAGGTACCAGACGGCGAGCAGTTTT 5133 37 100.0 45 ..................................... ATCTATTATTCGGACTCGGTCACCTACGGCTATCTCCGGATGTGC 5051 37 100.0 34 ..................................... CTCGTCGGAGACTACCTTTGCCTTGAATCCGGGA 4980 37 100.0 41 ..................................... CTTGTGCCACTGGACGACCGTTTCCAGGAATTCATCCTGGA 4902 37 100.0 40 ..................................... CGGCGATGTCATCGCTCTCCAGGCAGAGCANNNNNNNNNN 4825 37 100.0 37 ..................................... CACTCATTCCGGACTCTTCTGATTGCCTCTGGGAGTT 4751 37 100.0 33 ..................................... CGATAAGTTCTATAGTGTCCCAGAGTTCCCGGT 4681 37 100.0 39 ..................................... AACTCAGTGCTTCTTACTGATGCCCAAGATGTTCAGTGG 4605 37 100.0 36 ..................................... TCGGACGGAAACTTAGCACGACTCAGGATGCTGTTG 4532 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================= ================== 15 37 99.6 39 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCGGATGATAAAATGAGTGCAACTATTCCGGGAA # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGTCTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 1-969 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000199.1 Fischerella thermalis WC439 NODE_1688_length_2004_cov_42.750999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 1 37 100.0 35 ..................................... TACCGCGCTATGATGCATATATATCTGATATGGAG 73 37 100.0 62 ..................................... CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGAGACCCATCTCATCTACAATC 172 37 100.0 33 ..................................... GAGGAAGCTCGCCAGAGTATCCTCCCAGCCAAA 242 37 100.0 44 ..................................... GGGTGACAGATATGTTCAGGTCAGCGTACGCCCCCGTAGTCTGG 323 37 97.3 43 ....................................N NNNNNNNNNCGGTATCCTGTGGCGCGAGCGGAATACACCCATT 403 37 97.3 42 ....................................N NNNNNNNNNTTCCTACGAGCGAGGGCTTCGAGGCGGTACCAG 482 37 100.0 33 ..................................... GACATCCTGCCGCTGTATGTGCTGAGCATCCAG 552 37 86.5 38 ................................NNNNN NNNNNAGTCGGAGGCGCGATCGCGTATACTTTAGAGTT 627 37 100.0 42 ..................................... CCTCTGCCTTTGGCGATCTGATCACGTGTACGGGAGAACCCC 706 37 94.6 39 ...................................NN NNNNNNNNAGACACCGAGCGGGAAGAGGCGGAAACTCTT 782 37 100.0 38 ..................................... CATCAGCGATCGCGATCGCCCAAGTAGCGATCGCTCCC 857 37 100.0 39 ..................................... GAAATACAACCCGGAATTGGAGCAAATAGAGGGAACCCT 933 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================== ================== 13 37 98.1 41 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CNNNNNNNNNNTGTTGCCGTTTTCGATAGAAATGGTGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACACACGAATCTCTCCGCGTGTTCGGCTGAATGGAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAATTAGCACCCATGTCAGCAGGTTAGCTCCAGCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCCAGCAACTGCAAGCGATCGCCCTGGCGAGGGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAANNNNNNNNNNAGATTGGGAGGGGCAAGTTGTTATCGAGGCTCCCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACNNNNNNNNNNNNNTTTTTAGCCAAGGGGCAGTCAAGCCCGTGCCGTGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACNNNNNNNNNNGTGGAAGTTCTGTGCAGGCAGCGATCGCCCCCAGTTTCAATCCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 1415-1006 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000199.1 Fischerella thermalis WC439 NODE_1688_length_2004_cov_42.750999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1414 37 100.0 46 ..................................... ACGGCACGGGCTTGACTGCCCCTTGGCTAAAAANNNNNNNNNNNNN 1331 37 100.0 43 ..................................... GGGAGCCTCGATAACAACTTGCCCCTCCCAATCTNNNNNNNNN 1251 37 97.3 32 N.................................... CCCTCGCCAGGGCGATCGCTTGCAGTTGCTGG 1182 37 100.0 33 ..................................... GCTGGAGCTAACCTGCTGACATGGGTGCTAATT 1112 37 100.0 33 ..................................... TCCATTCAGCCGAACACGCGGAGAGATTCGTGT 1042 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 99.5 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGCTTGCAGTCGTCCATCGCGGCGAAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATATTCAATCGGCACTGGAAAGTGCGGTTGCANNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCCAAGATCCCGAAAACTTGCAGCGGATCAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGCTACGATCTCCACGAACTGATGCCATCATCCGGCAACGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAATTTTAGATGAAGATTTAAACATAAAAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGGGGGCGATCGCTGCCTGCACAGAACTTCCACNNNNNNNNNN # Right flank : CACCATTTCTATCGAAAACGGCAACANNNNNNNNNNGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAGGGTTCCCTCTATTTGCTCCAATTCCGGGTTGTATTTCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGGGAGCGATCGCTACTTGGGCGATCGCGATCGCTGATGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAAGAGTTTCCGCCTCTTCCCGCTCGGTGTCTNNNNNNNNNNTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGGGGTTCTCCCGTACACGTGATCAGATCGCCAAAGGCAGAGGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAACTCTAAAGTATACGCGATCGCGCCTCCGACTNNNNNNNNNNAATCCCTAATAGGGATTAATTTAAGTTGCAACCTGGATGCTCAGCACATACAGCGGCAGGATGTCGTTTCAATCCCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 3 2045-1628 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000199.1 Fischerella thermalis WC439 NODE_1688_length_2004_cov_42.750999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2044 36 100.0 43 .................................... CAATTCCCGCGAGAGCATCATCGTCGGAGNNNNNNNNNNTGAC 1965 36 100.0 43 .................................... TGGGGCGCGAACCTATGCTTGCAGTCGTCCATCGCGGCGAAAT 1886 36 100.0 40 .................................... TATTCAATCGGCACTGGAAAGTGCGGTTGCANNNNNNNNN 1810 36 97.2 34 N................................... CGCCCAAGATCCCGAAAACTTGCAGCGGATCAAG 1740 36 100.0 41 .................................... CCGCTACGATCTCCACGAACTGATGCCATCATCCGGCAACG 1663 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 99.5 40 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Left flank : | # Right flank : TTTTAGATGAAGATTTAAACATAAAAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGGGGGCGATCGCTGCCTGCACAGAACTTCCACNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACGGCACGGGCTTGACTGCCCCTTGGCTAAAAANNNNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGGAGCCTCGATAACAACTTGCCCCTCCCAATCTNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCTCGCCAGGGCGATCGCTTGCAGTTGCTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTGGAGCTAACCTGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 9122-8430 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 9121 37 100.0 34 ..................................... GTCCGAGGCTGTGGATAAGTTCTTCCAGTCGGAC 9050 37 97.3 34 ...................................G. CAGTATTGCCACCCCTAGTGCCTTTATGATGCCT 8979 37 100.0 34 ..................................... ATTCGTATCTTGCCACCCTTTATGGGAGGTTTCT 8908 37 100.0 41 ..................................... CCACTGCATACACTGGCTAAGATAAGGGTGCTNNNNNNNNN 8830 37 97.3 35 N.................................... CTCGACCATCCATACTTCCGCCCTATTTTTCTTAA 8758 37 100.0 38 ..................................... TGGTGACATCCCATTTAATCCGCCAAGTTTATCCTGAG 8683 37 97.3 33 ...A................................. ATGGGGGCGATCGCATGGCTTTTATCAGTCGCC 8613 37 100.0 33 ..................................... CTAGAAATTCAGCAGCATGTTGAGGTCGCCAAA 8543 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 8466 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 98.9 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ACCAGGCGGTTGTCGAAGGTATGGCGACTTGGAGGCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACAGCAATGTGATACCACACACCAACCAAGTNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTCACCCGGAATGTGGTATCTGCCACCCCATATNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATGATGACAACCTCCCTTCCATCTAAATAAACCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGGTAGAACCAGTTGTTAGACCAGGTTGGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : TGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 9730-9319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 9729 37 100.0 36 ..................................... GATTTGGATTTAGGTGAAATCAGTATCCTTCCTCAG 9656 37 100.0 36 ..................................... CAGGCGGTTGTCGAAGGTATGGCGACTTGGAGGCAA 9583 37 100.0 40 ..................................... ACAGCAATGTGATACCACACACCAACCAAGTNNNNNNNNN 9506 37 97.3 44 N.................................... ATTCACCCGGAATGTGGTATCTGCCACCCCATATNNNNNNNNNN 9425 37 100.0 33 ..................................... ATGATGACAACCTCCCTTCCATCTAAATAAACC 9355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 6 37 99.5 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AACTAAAATCCCTATCAGGGATTGAAACCAAAGCTACTTTAATTCAAATCCGTTGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGAAAAAGTTGAACTGGAAGAAGTAGATTGGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGGGACTTCGCGGAAGTCTACAAAATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGGTAGAACCAGTTGTTAGACCAGGTTGGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTCCGAGGCTGTGGATAAGTTCTTCCAGTCGGACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAGCCAGTATTGCCACCCCTAGTGCCTTTATGATGCCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTCGTATCTTGCCACCCTTTATGGGAGGTTTCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCACTGCATACACTGGCTAAGATAAGGGTGCTNNNNNNNNNNTTGAAATCAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 10688-10202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10687 37 100.0 32 ..................................... TATTAGTACAAATTACGCGCCAGTCTTCAGAC 10618 37 100.0 43 ..................................... CCAGTACCGATACGATGCGATCGCGCACCGTATNNNNNNNNNN 10538 37 100.0 35 ..................................... GAATTCGCCCAGAGATACAGCGATCGCACCCGCTC 10466 37 100.0 40 ..................................... GGATCCGGATGGCACCGGTATCCTGCGACCNNNNNNNNNN 10389 37 100.0 42 ..................................... ATCTGCCACTTCAGCAAAAATCAGGCGATAGNNNNNNNNNNA 10310 37 100.0 35 ..................................... TTTCCTTATTTATCAATACTTTTCGGGCATTTGTT 10238 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 100.0 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ATCTGTGTAAAGCTCACCGATCACTAGTGAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACTGACTCACTGCCTACGGTGTAATGATTTTGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGTTGATGCTGCAAAGCAGTTGCAGCATCACCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGGTAAATATCAAGACCAAAAGGAAAGAGTTACTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTTAAAATCCAGACTGCAGCGCTGGATGTGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAAAGCTACTTTAATTCAAATCCGTTGCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGAAAAAGTTGAACTGGAAGAAGTAGATTGGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGAGGGACTTCGCGGAAGTCTACAAAATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 4 11596-11418 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================= ================== 11595 38 100.0 31 ...................................... GACCCCCACCTATGGGCTAATTTCCTTAAGA 11526 38 100.0 33 ...................................... CGATCGCTGCAACATGTTTGCGCAAAATTAACA 11455 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================= ================== 3 38 100.0 32 AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AACTAAAATCCCTATCAGGGATTGAAACTCCCCGGAAACCCATAAAAACAGGCAACTAATGATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTAAGGAGCTATCTAGGATAGCTGAACTAGACCAAGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGCCTCGGACAGAAGCCCTTGGTGGGGGTAGCCAAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGAGGAAGCACCGGTGGAGGAGCCTGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCTAATTACGCTGGTGGTGGCATTCATCGAGCAATGGCTAG # Right flank : CAAAAAATCAGCAGAGCTGATTGCACCTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCACACTTTATCTGTGTAAAGCTCACCGATCACTAGTGAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACTGACTCACTGCCTACGGTGTAATGATTTTGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGTTGATGCTGCAAAGCAGTTGCAGCATCACCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGGTAAATATCAAGACCAAAAGGAAAGAGTTACTCGTTGAAATCAACTAAAATCCCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 5 12175-11846 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12174 37 100.0 33 ..................................... CCAATTAACTGCGTTCAGTATGGATTGGGACGT 12104 37 100.0 35 ..................................... TCCCCGGAAACCCATAAAAACAGGCAACTAATGAT 12032 37 100.0 39 ..................................... ATTAAGGAGCTATCTAGGATAGCTGAACTAGACCAAGTA 11956 37 100.0 37 ..................................... CGCCTCGGACAGAAGCCCTTGGTGGGGGTAGCCAAGC 11882 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TAAAATCCCTATCAGGGATTGAAACACCTCCCCAATATGCGAAAGAGGGGATTGCAGACTAAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGCATCACTGCGCGCGATCGCAGCGGCAGGACAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACGCCTTCTACCAAGGCGTTTCTGCGATCGCTTNNNNNNNNNNNNNNGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATATCATGTTTGGAGGATAGAAAATAACAGTCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCGGGAATTCCAATCTCTCATGCAGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAGGAGGAAGCACCGGTGGAGGAGCCTGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCTAATTACGCTGGTGGTGGCATTCATCGAGCAATGGCTAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGACCCCCACCTATGGGCTAATTTCCTTAAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGATCGCTGCAACATGTTTGCGCAAAATTAACAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAAAAATCAGCAGAGCTGATTGCACCTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 6 12986-12352 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 12985 37 100.0 35 ..................................... CAGCGAAAAGGCTCAGGAGTGGAAGGAAGGAAGGA 12913 37 100.0 41 ..................................... CCGCTCTGGTTTAATCTTGGACAGCCCCTNNNNNNNNNNGC 12835 37 100.0 34 ..................................... TTATACGTCTAAGGCTTCATTTTTGGATGGAGAC 12764 37 100.0 41 ..................................... TTCCTGTTTTACGTTCTTCTTGGCAATTTTNNNNNNNNNNG 12686 37 100.0 39 ..................................... ACCTCCCCAATATGCGAAAGAGGGGATTGCAGACTAAAA 12610 37 100.0 33 ..................................... AGCATCACTGCGCGCGATCGCAGCGGCAGGACA 12540 37 100.0 44 ..................................... ACGCCTTCTACCAAGGCGTTTCTGCGATCGCTTNNNNNNNNNNN 12459 37 91.9 34 NNN.................................. GATATCATGTTTGGAGGATAGAAAATAACAGTCA 12388 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 99.1 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AACATTACATTTAGATGTCAACCATCTTATGGATGGCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATGTAACTAATAGCACCTTATCTAACTATGTAACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGACAGCTTGCGACGCATCAACCACGCTCGGAAATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACTCATGAGCCTATCAAAGCTTATAGAAGGCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAAAGTCAAGGCGATCCAAGGCGTCACCCGGAATGGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATATCTATGCATTGCAGATATTGTGCCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTCGGGAATTCCAATCTCTCATGCAGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCAATTAACTGCGTTCAGTATGGATTGGGACGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCCCCGGAAACCCATAAAAACAGGCAACTAATGATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTAAGGAGCTATCTAGGATAGCTGAACTAGACCAAGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGCCTCGGACAGAAGCCCTTGGTGGGGGTAGCCAAGCGTTGAAATCAACTAAAATCCCTATCAGGGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 7 13595-13123 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13594 37 100.0 38 ..................................... ATCCCTAAGGATGTCTTACCCCAACGCCTACCATTTAC 13519 37 100.0 36 ..................................... ATTACATTTAGATGTCAACCATCTTATGGATGGCTA 13446 37 100.0 34 ..................................... ATGTAACTAATAGCACCTTATCTAACTATGTAAC 13375 37 100.0 35 ..................................... GACAGCTTGCGACGCATCAACCACGCTCGGAAATC 13303 37 100.0 33 ..................................... ACTCATGAGCCTATCAAAGCTTATAGAAGGCTA 13233 37 100.0 37 ..................................... AAAGTCAAGGCGATCCAAGGCGTCACCCGGAATGGAA 13159 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GATTGAAACAGCACTGTAAGAAGAGCGATCGCCAAACTCNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTAGATGGTGTATACATGCTAGGTATAGGATTAGCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTAAGGACTGCTGGTGGGATCTTCATGACAGTAGTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGACACGGGACTTCGATCCTAGGTACACCCATGCGCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCAAGCGGCTTCGGAATAACTCTTGAACAGGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATATCTATGCATTGCAGATATTGTGCCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGCGAAAAGGCTCAGGAGTGGAAGGAAGGAAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGCTCTGGTTTAATCTTGGACAGCCCCTNNNNNNNNNNGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTATACGTCTAAGGCTTCATTTTTGGATGGAGACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCCTGTTTTACGTTCTTCTTGGCAATTTTNNNNNNNNNNGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACCTCCCCAATATGCGAAAGAGGGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 8 14562-13793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 14561 37 100.0 34 ..................................... CTCTGCTGAAATGCAATGAAGCTTGAAGATGCAA 14490 37 100.0 33 ..................................... CAAATAGGATTCGGACTCAAGCACTGCGCGTAT 14420 37 100.0 40 ..................................... TGGTCGTTCTTCTTTACCAGGGATCCTTTTGTGTAGTCGG 14343 37 100.0 34 ..................................... GGCGCTCTTCTGAATCGTACGCGATCGCGGCGAT 14272 37 100.0 36 ..................................... GAGATTATTTTCTGAGGAGCCTGCCAGCATTTCCAT 14199 37 100.0 40 ..................................... TCGAGGCTCCGATATTTTAATTATAAGGGATATGTTGAAA 14122 37 100.0 38 ..................................... AGCACTGTAAGAAGAGCGATCGCCAAACTCNNNNNNNN 14047 37 94.6 36 NN................................... CTAGATGGTGTATACATGCTAGGTATAGGATTAGCT 13974 37 100.0 35 ..................................... TAAGGACTGCTGGTGGGATCTTCATGACAGTAGTA 13902 37 100.0 36 ..................................... GACACGGGACTTCGATCCTAGGTACACCCATGCGCC 13829 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.5 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TCCATCGTATAGATGTACGATAGAAGAGTACTGTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACTTGCAGTTGCCCATCGAGGTAGGCAATCTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCTGGCGATCGCGCCTCGGATGGATAGCGACNNNNNNNNNNGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGGTAGGCATCTACTTGGATGCCTACGATGAGACCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGCTTCATCGCCACCTCCATCGATGCCGAATCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGGCAGAGGGCGTTTGCCGGGTCGTAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCAAGCGGCTTCGGAATAACTCTTGAACAGGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCCCTAAGGATGTCTTACCCCAACGCCTACCATTTACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTACATTTAGATGTCAACCATCTTATGGATGGCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATGTAACTAATAGCACCTTATCTAACTATGTAACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGACAGCTTGCGACGCATCAACCACGCTCGGAAATCGTTGAAATCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 9 15408-14701 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 15407 37 100.0 44 ..................................... GCTAAGGACCTCGTCAGCTTCGTTGCTGAATTTNNNNNNNNNNT 15326 37 100.0 38 ..................................... TCAACCTATCGTCTCCCCGAACCCTACGCCTATTGGGA 15251 37 100.0 45 ..................................... GTTTCTGAAATACATTGTGGTCTCCTACTCGATACNNNNNNNNNN 15169 37 100.0 34 ..................................... GAAGGATAGCGATCGCGGACTGCACAGAACTCGA 15098 37 100.0 36 ..................................... TCCATCGTATAGATGTACGATAGAAGAGTACTGTAT 15025 37 100.0 33 ..................................... ACTTGCAGTTGCCCATCGAGGTAGGCAATCTGC 14955 37 100.0 39 ..................................... GGCTGGCGATCGCGCCTCGGATGGATAGCGACNNNNNNN 14879 37 91.9 35 NNN.................................. CGGTAGGCATCTACTTGGATGCCTACGATGAGACC 14807 37 100.0 33 ..................................... AGCTTCATCGCCACCTCCATCGATGCCGAATCC 14737 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 10 37 99.2 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAAAGTTTATAGGAAGGCTATTCGCCTTCCTAAAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGGAGAAGCTACAATAACGGGCTTCTGAGCANNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGGAGATTCCACCGCAGACCTCTATCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGATCGATGCCGAGAGCGATATATGCCTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCCATTCTCTATGGAGATAGTGAATCCCGATGAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGATCGCCGCCAGCCACCGGCACCTACCCGG # Right flank : CAGGCAGAGGGCGTTTGCCGGGTCGTAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTGCTGAAATGCAATGAAGCTTGAAGATGCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAATAGGATTCGGACTCAAGCACTGCGCGTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGGTCGTTCTTCTTTACCAGGGATCCTTTTGTGTAGTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGCTCTTCTGAATCGTACGCGATCGCGGCGATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGATTATTTTCTGAGGAGCCTGCCAGCATTTCCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 10 15820-15572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 15819 35 100.0 41 ................................... CGGAGAAGCTACAATAACGGGCTTCTGAGCANNNNNNNNNN 15743 35 100.0 33 ................................... GGCGGGAGATTCCACCGCAGACCTCTATCACGT 15675 35 100.0 34 ................................... GGGATCGATGCCGAGAGCGATATATGCCTCGGGT 15606 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 100.0 36 TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TCCCTATCAGGGATTGAAACCGGACTCTGGTGGGAATCCTATCGGATCCTGCNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGGTAGTTTGGGAAGTGGATATTGGAGATGAGACCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTTGTATGGCTGTTCTTTGCAGTACGTGATAATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTTCTAGCTGCTGGACGACCTCGGCTGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAAAGTTTATAGGAAGGCTATTCGCCTTCCTAAAGAAGT # Right flank : GCCATTCTCTATGGAGATAGTGAATCCCGATGAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGATCGCCGCCAGCCACCGGCACCTACCCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTAAGGACCTCGTCAGCTTCGTTGCTGAATTTNNNNNNNNNNTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCAACCTATCGTCTCCCCGAACCCTACGCCTATTGGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTTTCTGAAATACATTGTGGTCTCCTACTCGATACNNNNNNNNNNGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAAGGATAGCGATCGCGGACTGCACAGAACTCGAGTTGAAATCAACTAAAATCCCTATCAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 11 16627-16077 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAE01000197.1 Fischerella thermalis WC439 NODE_1101_length_20421_cov_42.329563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 16626 38 97.4 34 .....................................G TGGTACGTCTTCTGGCACAGCCAGATACCCTCTG 16554 38 100.0 39 ...................................... CTATGGCTGGGATTCTGGATGATTTGATGANNNNNNNNN 16477 38 97.4 31 N..................................... TCGCCAGAGAGGTATCTCAAGCCCTCTGGAG 16408 38 100.0 34 ...................................... GGGCACGTGCCGCTCGGATGGCTGCTCTAGGCTC 16336 38 100.0 41 ...................................... GGACTCTGGTGGGAATCCTATCGGATCCTGCNNNNNNNNNN 16257 38 100.0 35 ...................................... CGGTAGTTTGGGAAGTGGATATTGGAGATGAGACC 16184 38 100.0 32 ...................................... TTGTATGGCTGTTCTTTGCAGTACGTGATAAT 16114 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== ========================================= ================== 8 38 99.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : CTTCTAGCTGCTGGACGACCTCGGCTGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAAAAGTTTATAGGAAGGCTATTCGCCTTCCTAAAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGGAGAAGCTACAATAACGGGCTTCTGAGCANNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCGGGAGATTCCACCGCAGACCTCTATCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGATCGATGCCGAGAGCGATATATGCCTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACC # Alternate repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA //