Array 1 149224-146547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSQI010000011.1 Escherichia whittamii strain Sa2BVA5 NODE_11_length_149641_cov_8.336110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 149223 28 100.0 32 ............................ TCGCACGTGGCGATCCCTATCGGTGAGGAGTT 149163 28 100.0 32 ............................ ACAGGGGCGCATGGCGCACAGCGACGCGAAAT 149103 28 100.0 32 ............................ AGTCCACCAGCGCGCCGCCGTGTGTGCTGTAT 149043 28 100.0 32 ............................ ACAGGGGCGCATGGCGCACAGCGACGCGAAAT 148983 28 100.0 32 ............................ AGAAAGTGCAGAAAAAAGAGGCCTCGCACGTG 148923 28 100.0 32 ............................ GGTGCCAGAGAACGGAATATACGGCACCCTGT 148863 28 100.0 32 ............................ ACTCAGCAGTAATATTCCCGTCAGACAACGTA 148803 28 100.0 32 ............................ ATTAATTGCGTGAATTGCTGTTCATTCATTTT 148743 28 100.0 32 ............................ CGCCGCGCCATGCTTGTTTGTATCTCTCTCCC 148683 28 100.0 32 ............................ TCCGATAACGAGAGGAAATCATCACCACCGGA 148623 28 100.0 32 ............................ GAAACTGGTGCCGAAGTACAGGCCAGTACGAT 148563 28 100.0 33 ............................ GCCGACAATAGCCAGGAACATGAGCGTGATCGT 148502 28 100.0 32 ............................ AGCCTGGGTGATGTTGTCGTCATTTAATGTGC 148442 28 100.0 32 ............................ CAATACGGGTAAGAAATTTTTCGTGCGCCACT 148382 28 100.0 32 ............................ TACCAGGACTACTCCCGCAGCGCCGCCAGCGT 148322 28 100.0 32 ............................ GACACGAACAGATCGCATTGTGAACACCTCCG 148262 28 100.0 32 ............................ AACCTGGTTTAATCCTGCTGACGAAAAACAGA 148202 28 100.0 32 ............................ GGAGTGCCTGCAATCATTCAGGCTGCTGCCGT 148142 28 100.0 32 ............................ CACAAATTCCCCAGGCCAGCTACTGACACTAA 148082 28 100.0 32 ............................ ACGCAGAGCGGCGACAACCTGACGTTCATTGC 148022 28 100.0 32 ............................ TGTAATGTGCGGGAAGAAGAGAGGCGCTCACG 147962 28 100.0 32 ............................ GGCATCGGCTATGGCGTGTTTGAACTGATCCA 147902 28 100.0 32 ............................ ACATTCCAGACATAACATTTTCGAGTCGCGCT 147842 28 100.0 32 ............................ AAAAATAACATATTCAAAGAAACCGTTTTGTT 147782 28 100.0 32 ............................ CAAGGGATCAAATCTTTTGAGAGCAATTAAGA 147722 28 100.0 32 ............................ ACTTGATGAAATTAGGCGCATGTACCTCCAGT 147662 28 100.0 32 ............................ GCTTTCTGCCAAATATTCGCAAATAGTCGTCA 147602 28 100.0 32 ............................ GCTTTCTGCCAAATATTCGCAAATAGTCGTCA 147542 28 100.0 32 ............................ ACTCGCCGTCGTCCTGCTCGCCAGCCTCTTCC 147482 28 100.0 32 ............................ ACTCGCCGTCGTCCTGCTCGCCAGCCTCTTCC 147422 28 100.0 32 ............................ AGATTGGAGAACAGATCCGCGTCAACTGTCGT 147362 28 100.0 34 ............................ TCAGCTTCAAAACATCGCGTCACCAACATTTCAA 147300 28 100.0 32 ............................ TTAGATGAGAGTGTGCGTGCCTTCGACTTTAC 147240 28 100.0 33 ............................ CTGATGGTTGGATAAGCTGTAGTGAGCAGATGC 147179 28 100.0 32 ............................ AGCGTGAGGCGGTTACCCTGTCGGCGCCCACG 147119 28 100.0 32 ............................ TGGTGGCGTATGCAGGGCTATGCGCTGGAAAT 147059 28 100.0 33 ............................ AAGAAACGCAGCAGCGTTGACGCCGCGATTAAT 146998 28 100.0 33 ............................ ATAATTTGTTTTTGCACCACTGTACCTCGTTAA 146937 28 100.0 33 ............................ AGCAGCGATGCGAAGCTCTTGAGGCGGATCAAT 146876 28 100.0 33 ............................ GCAACAAGGGGGGCGCATGACCGCAAACATTAT 146815 28 100.0 32 ............................ GAACGCAACAGCAGCACGACATTCAGCAGTGC 146755 28 100.0 33 ............................ ACGTATCCGTAACCAGTTTAACGTCGTGGGTAA 146694 28 100.0 32 ............................ GCAAACCAGATTTGGGATAAGGTTAACTCAGG 146634 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACTGCCT 146574 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAGATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCAATGAACACACGATTCGTTCGACCGAGATTATGACCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTATGTAGAAAATATGAAATTGAAGAAGTACCGATCGACCCTTTTTTCAGGGTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTATGACTCGGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCC # Right flank : CTCAACGCTCCATCCTCCAGGATTTACTCCCCATAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCTATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCCAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10566-13063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSQI010000004.1 Escherichia whittamii strain Sa2BVA5 NODE_4_length_388458_cov_7.964772, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10566 28 100.0 32 ............................ GTTCATGACGTGGTGTGAAGAGCGCGGGATGA 10626 28 100.0 32 ............................ TCAATGAGCAACTTTGGGCTTGCTGTGGGCAC 10686 28 100.0 32 ............................ TTGATTCTGTCATCGCTGGCTGGTTTGTGCTG 10746 28 100.0 32 ............................ GAATTCCTGCAAAGCGATATTGACGATGTATG 10806 28 100.0 32 ............................ CGTGTCTTTGACATATGGGAAATAAAAAAGAA 10866 28 100.0 32 ............................ GAAGTCCACCAGTCTTTGAATGTGTGCATTTT 10926 28 100.0 32 ............................ AGGGGGATTTTGTCTATGCTGAAGTAAATGGT 10986 28 100.0 32 ............................ TGCCGCCAGGGCGCGCCCGTGTAGAACACCCT 11046 28 100.0 32 ............................ CGTCAGGCCGGACAATCTCTAATAATTCGCGT 11106 28 100.0 33 ............................ CTCAATGCGCCTCGCCAGCTCCGGTGCGCCCAT 11167 28 100.0 32 ............................ TCACTAATTGAAAAACTAATATTCACTCGTTC 11227 28 100.0 32 ............................ AATATACAGATTCGGGGTTATGCGGGGTTGAT 11287 28 100.0 32 ............................ CGAAATTTTTCGCACCGAAATCGCCGAATCTC 11347 28 100.0 32 ............................ ACACACGTAAATATTTACGTACAGGTGCGCCC 11407 28 100.0 32 ............................ TGTCGGCGCCCACGATAGCGGCGGCGGCTGTA 11467 28 100.0 33 ............................ CTGATGCCGGGAAAAAAATATATCAGCAGCGAA 11528 28 100.0 32 ............................ AAAAGAGGGGGATGTTGTTATCACGTGGATTG 11588 28 100.0 32 ............................ AACACTATCGGGGTTGGTTTTGTCCGCTTTAG 11648 28 100.0 32 ............................ GCATATTGTCAGCGCGATTTCTGCAACCGTTC 11708 28 100.0 33 ............................ AGAAGCATTGCGCCAGGCCGATTTATGCCTGGA 11769 28 100.0 32 ............................ CTGACAAAATTTGGCACCGATTTTCCGGCAGT 11829 28 100.0 32 ............................ GATTGCTATGTAGTCACCCAGGCGCAATACAA 11889 28 100.0 33 ............................ GCCCACTCATTACGCTGAACACGTGATTGAGTT 11950 28 100.0 33 ............................ GTCTTCCATGTTGCTGATTAGTTTTAGCGTGTT 12011 28 100.0 33 ............................ GGCACGCTGGAGGAATTTTTATTAATCGCCGAT 12072 28 100.0 32 ............................ AGCTGCGCGGCCCTGTTCTGTATCCACAACAA 12132 28 100.0 32 ............................ TGAGCGGCCATCACGTCAGTAATTGTCATTCG 12192 28 100.0 32 ............................ GGTTGACGCTGGACCAGTTCCGCGCGATTCAC 12252 28 100.0 33 ............................ CTGTTTGATGGCCACGCGAGTTATCATCTTAAC 12313 28 100.0 32 ............................ ATTCCCCATCCTTGATGTAGTCACTTGTGCCA 12373 28 100.0 32 ............................ CTGAATCATCAACGTCGCCCAGCGATTCGCGC 12433 28 100.0 32 ............................ AGAAATAGAAGACGAGAAAACACCGGGCGCGA 12493 28 100.0 32 ............................ AGCAGTTCGATCGCTGGCTCAGGCGTCTGAAT 12553 28 100.0 32 ............................ CCACCCGAGATACGATCCAGCAGACTCAAACC 12613 28 100.0 32 ............................ TTTCGCTTCCAGCTCCGCGCGATGGATATACC 12673 28 100.0 32 ............................ AGCAACAAAAAACCTGGTGACCGGATGACACA 12733 28 100.0 32 ............................ TTGCCAGTGATTCACGAGGCGAACTGTGTTAC 12793 28 100.0 33 ............................ ATTTGTCATGTGTAAAGGGGTGTACATACGTGT 12854 28 100.0 32 ............................ TTAGCCGCCAGAACGAACACACGACGCAGCGC 12914 28 100.0 32 ............................ AGGGCGACCAGTGCCACCAGAATTAATATTTT 12974 28 100.0 33 ............................ ACAGACAATCAATCGAATTAATTTCGAGGCCGG 13035 28 92.9 0 ........................C..T | C [13058] ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGTTTATTGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGTGCACGTCCAATGGCACGTGTGATTCAGGACAACCTGAAGAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGCTTGTTAGGTAGGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGCGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTATTGATAATTAATGCAGCTGGAAGGTAAGGATAAAAAAGGGTGGCACCAGGAAAATTAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCGTGTTATGACGCTCTCAACTTCAAACCATTAGCCCCAGCACACAATAACAATTGTGATAATTGCGATGAAAATCAATTTCTCGTACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAAATACCTTACCCCATCTGACCTCAAAACAATTCTCCACTCCAAACGAGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGAGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTAGGATTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTTGATGTTGATGTTGATGTCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //