Array 1 4-215 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFDI01000010.1 Gardnerella vaginalis 315-A contig00004, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
         4	    29	 100.0	    32	.............................	TACTGAAAGTACAATGGTTATTAATTCTTCTA	
        65	    29	 100.0	    32	.............................	TATATAATGGTATTTTGTGCTCTTGATATTTT	
       126	    29	  96.6	    32	A............................	CTATCTTTTGTGTTTTCATAGCTTGTATTGTT	
       187	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         4	    29	  99.2	    32	GGGATCACCCCCGCGTATGCGGGAAATAC	                                	       

# Left flank :   TTGG
# Right flank :  CCTTAAAAATCCCAATAAAATAGCTATTTTTCCAAGACTAAATAGTAAAAACTATTTACTTTTCAAAATTAACCCATTGTTGCACACAATCCTTCAAAATTATAACCTTATGAAAGAAACTTTAACAATTCTGTCAAATTAAGAACAAGACGCGCCGTTAGCCTAGCATCCAGGAGAGCTCTATGAGGAACTGACTCAGAAATGTTATACTCATGCAGAACAGTCTTCAACTGATAATTTTTCAAAAACCTCCTATCATGCTTCACAAAACGTGAAATATCAATAACTTTATTAACAGAAAAAGCACTGCTGAGTTTCTCATCTAATGAGAATAAAGCCGAATTAAAAAATCCAATATCAAACGATACGTTATATCCTAATAATGGTAATTTTCCCACAAAATCAATAAATTCTCTTAATGCTAAATCTAATCCGACACCATAAGATTCAAGCATGTTGGATGTAATACCAGTTAGCTCAATAATTTCATTAGGAATAAA

# Questionable array : NO	 Score: 5.82
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGGATCACCCCCGCGTATGCGGGAAATAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-9.80,-9.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [3.3-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//


Array 1 427122-426606 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFDI01000008.1 Gardnerella vaginalis 315-A contig00012, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    427121	    28	 100.0	    33	............................	TAAGCATCATACTATCTAAAGTTGTCGCAAAAA	
    427060	    28	 100.0	    33	............................	CTCATGTGAAAAGCTTTTCTCTTGTCTTTTCAC	
    426999	    28	 100.0	    33	............................	CTGTGCGAGTGTTATTATCTTTTGCTGTGTTTT	
    426938	    28	  96.4	    33	.......................T....	CGCTTGTATCATATGTTTTATTAGTGTTTGTAA	
    426877	    28	 100.0	    33	............................	CGAAATCCTTTAATGATTGGCGATGATGTATAT	
    426816	    28	 100.0	    33	............................	CTGAACTTGATAATTTGGTTAATGTTGCTAATA	
    426755	    28	 100.0	    33	............................	TCGTGGAGTTTTACGAATCCAGCTGGCGACTTG	
    426694	    28	  92.9	    33	..C....................A....	TAAGCACCCTAAAAACGCGGCGGGTATAACCAC	
    426633	    28	  75.0	     0	..C..............T..ATAA.A..	|                                	
==========	======	======	======	============================	=================================	==================
         9	    28	  96.0	    33	GTATTTCCCGCATACGCGGGGGTGATCC	                                 	       

# Left flank :   TCTTTTAATTTTGATATACGGTCAAAAAAGC
# Right flank :  TACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGCTGATTGTTTTTACAATAGGGTAGGCAAATAAAAAACTTGCCTACCCCTTATTTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGTCCCTTTCAGCTCTTGCCATGATGACGGCAACTCTACGGGGCGGTGTAGGCGACGCATTGCCCAATCGCGGATCGTGTCATAATCCCACGCGGGCTTTGTTGTTAGTACGCCGACTGAGTGTGTTGGTAGTGGGATTAAACCACGGAGGTTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGAGCGCACGAGATATTGGCGCATAGACTCGTAGCCGACGCCAAGAAGCCGCGCAATATCATGTAGTGATACGAGTACTGTTTGACCGTTCTCATCTAACATAATAGGCTCCTTTTA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTTCCCGCATACGCGGGGGTGATCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.80,-9.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,4.91   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//