Array 1 126499-126127 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIP01000011.1 Paenibacillus lactis 154 ctg188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 126498 32 100.0 35 ................................ AGATTTTTCACTCGTTGACGATGGGGGAAATCCTG 126431 32 100.0 33 ................................ GGAACCTTTGTGATAAAAAAAATCATAAATAAG 126366 32 100.0 39 ................................ ATTTCGACGGGGGTGTAGTGACAGAAGATTTAGCGGGGG 126295 32 100.0 37 ................................ TATTATTGGCGGAAGCATAAAACGGTTCTGCGTCTCC 126226 32 100.0 36 ................................ AGAACGGTAGCGCACCATTAACGATGGCAGCGCAGC 126158 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ ======================================= ================== 6 32 99.5 36 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : TTCACTTCACGTAAATGCTCATCGACCGTTTGAATTTTTCCGTCTGACTGACGAATATGAGCAATATAAGTCATTACACACCCCCAAGACCCAAGACTTAACACCTACAAACGATCCCTACCAGAGATTGAAGACCTATAATACTCATTCGCCACCAACTGACAATTTCCTACCAATAATTCAAAAAAATAAAAAAAGCGATTTTATTACGACAAAATAGAAGAGAGAGGACCGATCGAAATAGTCGCAGTGAAATAAAAGCTTGGCAACTGGAAAGTAATCAAGTAATTTTAAATCAGGCTGCTTGGTTAGAAATTCAAGTGCGAATGTGAAGCTCGCATGAAATCCCCGGGCCCTTCGCACCTCAGAATTTGTCGAATAATCGAGAGTTGTTTCATCCTGACAAAAAGTCAAGTATGAACCTCTGCCTTTTTTCGATAAATGTGGCCGAGAGCACTTTACATTCATACCTAAAATGGATTGATTACTGTTATTTCACG # Right flank : AACCAACGCTGGAATTGGTGGCTCGGGAGTCTAGTGTCCTACCCTACATGTATCAGCAATATGTCGTTAAAAATCAGATGATTGTTTTATCTAAAAACGTGGATATATAAATCGTCCCCATAGCCTCTACCCGGACTACGGGGACCATTCCTTATCTCTTAAGTTTAACTTACTTGCCGCCACTTACGATAACGGAGGCTCTTCCGGCTTCACTCATTTGGAAGAGCCTACTGATCATTTGCGGGATTTACCGCCGTATTTTAGAGGAGCTTACATCAACCTCATTTGCGGATTCCGCAATTCCCGTTTATCGCTCTCCTATCGAGTATGGTCCAATTGCCCCCCAGCAGCGTCCATCTCCGCCCCCCGCTCATCCAGCCGTTCCTTCAACTCCTCCGCATCATAACGGACGAACGCCCCGTTGACGGTACCGATATAGACTTCGCCATCGGCAATATTCAGTGCGCCGCTTCTTGCCGCCTGCTCGCGCAGATCGACGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.80,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 135235-136393 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIP01000011.1 Paenibacillus lactis 154 ctg188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 135235 32 100.0 34 ................................ GTATACAAACCGACCGGCTTTACGTTGAGCTGGT 135301 32 100.0 34 ................................ ATTCCTGCCGGCATCAACCCAACTACCGGTAAGC 135367 32 100.0 32 ................................ TACGACTACATGGGCGGCGCTGCACCAACAAA 135431 32 100.0 37 ................................ TGCAGAAGAAAATGCGAAAAAGGCAGATGAAGAGCAG 135500 32 100.0 33 ................................ ACCATTTCCTCGGTCCAGTCGGCAAACTTGATT 135565 32 100.0 34 ................................ ATTTAAATAGAATGAGCATCACGATAATGATGTA 135631 32 100.0 34 ................................ GCTCATTGGCTCTCACCCTCCAGTAGCTGCCCTG 135697 32 100.0 36 ................................ TCCCCGGTCCAGTCGCTGGATACCTTGATCCCAAAT 135765 32 96.9 36 ....A........................... ATATCGATCTGTTCCGCGAACCTCGGCCACAAGGGA 135833 32 100.0 34 ................................ CGATACTAGGCCTTGCCGCGACGATCATTACATC 135899 32 100.0 34 ................................ AGGTGGTATTTGTCCTGCCGAACGGCCTAGACCC 135965 32 100.0 34 ................................ TTGCGCAACGAGACGACGGCCGAAACGCTTGAGT 136031 32 100.0 33 ................................ GAAGATATTACGATGGAAAACTACGATCCGCAT 136096 32 100.0 33 ................................ TGATCGGCCTTTGGTATCTGCTATTGAGATTAT 136161 32 100.0 33 ................................ ATGAAGGCGTACTGCTGGATCTCCATGTATTCA 136226 32 100.0 34 ................................ AATATAGCAGCGGGGAGAAACACAAAGTTCCTGC 136292 32 90.6 38 ..........AT............G....... ATGTCCTTTCAGCAGCCTCCAGCCTGCCATGCTTCCGC 136362 32 75.0 0 ..T..........T......T...T..TGGC. | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 97.9 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGGTCCCTTTGTTGATCTTGATTACTTATGATGTAAGCACGACCGACAGCGAAGGTAGAAGAAGGCTTTCTAGGGTAGCCAAAACATGCGTGGATTACGGTCAAAGGGTTCAGAATTCCGTCTTTGAGTGCATTTTGGATGCGACCCAGTTCCGACGTTTGAAATATGAGCTTGAAGAAATCATTGATAAGGACCAGGACAGCTTACGGTTCTATAATTTGGGCGACAACTATAAAAAGAAAATTGAGCACATCGGAGCCAAATCGACTTACGATATGGAAAGTCCGTTGATTCTTTAATGGTGCGAATGTGAAGCTCACATGATTTTTCCGGGTCCTTCGCACCTCATAATTTGTCGAATAAATGTTGGTTATAGAAGTGAAGCGAAAAGTCAAGACTGGATCCTTTCATTTATGATATGGATTTAACCAATAAGGTTGCGAATTCATACCAAGGTGAGATTGCTCAGCTGCTTTTCGCG # Right flank : TCCGCAGTTCATTACAGCGATCGGTCGATTTTGATGACTTATACTCTTCATATAGAAAGGGTTACGTGCGTAGGGTCGGTTCGGGAAGCCGCATGTGAGTATAATTACTCCATGCGGTTTTTCAATATATATGACGATTGAGGAAAAGGTCAGAGGTGCTTCTCAAGGCTTCCCCTTACAGGGCATATTGTAACTTCCATCAAAATATAGTGAAAGCAGAAGGCTTGACTTATACGAGGGAGCTACAGCCGGGGTTCCGGCTGTGCACGGTCGCACAGCTCTGACTAGTCCCTAAAAGGATGTGTTGAGGTGCCCTTGCCCCGCCTTGTGTGCCCCAACTAAGTTCTACGGCCAGCCCCAGACTTCCGGGTCACTCTCTTTGGACCCATAAGGTGCCCAGCCTAGCCCTTTGGGCCTTGTACTGTCTTTCCGGGCGCATTAGCCCGTCTCAAGATTCCGCAACCTTGTCTCGACCGATCAGCCCCGTAAGGGACAACGCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //