Array 1 55-815 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJXQ01000112.1 Klebsiella pneumoniae strain EuSCAPE_TR245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 116 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 177 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 238 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 299 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 360 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 421 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 482 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 543 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 604 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 665 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 726 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 787 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGCCAGCGGGGATAAACCGTATACAGTATTATCATAGCGAATTCCCATCGGG # Right flank : GCAATCCCAGAGCGCGAATATCTTGGGCTCTCGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJXQ01000291.1 Klebsiella pneumoniae strain EuSCAPE_TR245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 75 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 136 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 197 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGACCAGGATTAG # Right flank : TAATGGCAAAACCATGACCTGATCCGGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //