Array 1 1915-146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNQQ010000052.1 Vibrio cholerae strain 107V1216 Vibrio_cholerae_NonO1_107V1216_Contig-53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1914 28 100.0 32 ............................ TGATTGGCGATTTTGATTCCTTTGATGATGCC 1854 28 100.0 32 ............................ TCTTTTTGTCTTTGCCCTTTTGCTTATGTTGG 1794 28 100.0 32 ............................ ATTCTTTTACAATGTTTTTCGTTAGTTTGCTC 1734 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 1674 28 100.0 32 ............................ TAAAAAGCCGGGTTCAATGGTCACTTTGATTT 1614 28 100.0 32 ............................ ACAATATGTAGTATGCCGCGGCAGCTGATACG 1554 28 100.0 32 ............................ TTTATCTTTTGCTTTCAATTGAGCCTTTAAGT 1494 28 100.0 32 ............................ ACTATTTTGATTGCTTACGTTCCAAGTGTTTT 1434 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 1374 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 1314 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 1254 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1194 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1134 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 1074 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 1014 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 954 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 894 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 834 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 774 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 714 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 654 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 594 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 534 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 473 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 413 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 353 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 293 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 233 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 173 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATCATGAAGTTAAAAATATGAGAAACTCGTACATGATTATCATTGAGCAGCTAAAAAAAGTGAAAGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //