Array 1 1025286-1026538 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055806.1 Escherichia fergusonii strain RHB03-C23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1025286 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 1025347 29 100.0 32 ............................. ATCAGCCGGAATCTCTCGCCCCAACAGCAGCA 1025408 29 100.0 32 ............................. TATTTGTTATAGCATAGCGAGACACAAATTAA 1025469 29 100.0 32 ............................. GCGTGAAAGTTAAATTCCTGCTGGACCAGCAA 1025530 29 100.0 32 ............................. TTATTTTTGCTTTCTCTGCGCAATACGTTCGC 1025591 29 100.0 32 ............................. ATTTGCCTCATATGCCTCTGAGTCAAAGTTCG 1025652 29 100.0 32 ............................. CCCTGTTTTCACATGTTTTGTCACGGAAAAAT 1025713 29 100.0 32 ............................. CTGGGCGCTCTATTTATTGCACGGATGTTATG 1025774 29 100.0 32 ............................. GGCCGTCGCTACCCAGTTAACACCCATCAGAA 1025835 29 100.0 32 ............................. CGGGTGGCAATAATGGAAAAAGGGTGGTTTCG 1025896 29 100.0 32 ............................. CCCCATCTAGCCATACGCACCCCTGGAGTCAA 1025957 29 100.0 32 ............................. AGTGAGCAAAATTATTGAATTACCCGTTGAAC 1026018 29 100.0 33 ............................. GACCTGGAATATCGTTTCGGGCGCTACTCTTAC 1026080 29 100.0 32 ............................. GTCAGGATTTGGAGAATATGTCTCCAGTAGAC 1026141 29 100.0 32 ............................. TACAGTACCAGGCGGAGATTACCCGTTTTGAG 1026202 29 100.0 32 ............................. AAATCAATCTATAGCGTCAGTAAATGGAATTA 1026263 29 100.0 32 ............................. GGTATAGTTCCAACATACACGCCTATAAAAGA 1026324 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 1026388 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 1026449 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 1026510 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1052046-1053294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055806.1 Escherichia fergusonii strain RHB03-C23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052046 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 1052107 29 100.0 32 ............................. CGCCATATCCCATGCCATGTATTCTCTATCGC 1052168 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 1052229 29 100.0 32 ............................. ACATCACGGTCAGCACAACGCCTGTTGCCTCT 1052290 29 100.0 32 ............................. TTGAAATGGCGATGATGGAATACAACGTGAGT 1052351 29 100.0 32 ............................. GCCCAGGGATTCCGCTCGTTTTCATCAAAATA 1052412 29 100.0 32 ............................. TCGCCCTGGCTGAGCTGATGCGCATGGACGAG 1052473 29 100.0 32 ............................. GGCGCTGATTGAAGTCACGCGGTAAGTAAAAG 1052534 29 100.0 32 ............................. GGCGGGGCGGGGTCGGTAGGCAAAATCCCGGC 1052595 29 100.0 32 ............................. ACATAATGCTCAGCGTTCCCCTCATCGGTCCG 1052656 29 100.0 32 ............................. TGGTACCACGCGTTTATGGTCGACGGTGTCGC 1052717 29 100.0 32 ............................. CGCAAATGCTACAAAAACCCCATCAGGCAATT 1052778 29 100.0 32 ............................. ATGGCTGGATCATGGTTGTGATGGGATTTACC 1052839 29 100.0 32 ............................. CTGGTATTTTCGACATTATGCTCAAAAACAGA 1052900 29 100.0 32 ............................. TTGGGGTTTTTCCGTATATGGGGGCAACCATC 1052961 29 100.0 32 ............................. AGTGAGTCTCGTCGTCGTCGTGCATTGCGGGA 1053022 29 96.6 32 .T........................... GGAATCTGACAATACGGCAAAGGTGACTGTTG 1053083 29 96.6 33 .T........................... AGTCCTTAACCTCGGTACTAAAACGGTTAATGC 1053145 29 96.6 32 .T........................... CCTCTGGATTACTACCGATAACTAACACTGAA 1053206 29 96.6 32 .T........................... GTAATGCACTCACCACGGTTACAACAGATATT 1053267 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //