Array 1 227222-227969 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQMS01000002.1 Hafnia paralvei strain CITHA-6 NODE_2_length_834549_cov_12.0128_ID_2501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227222 28 100.0 32 ............................ ACAAAATTTTTACATTCCTATTTTACTAGATA 227282 28 100.0 32 ............................ CTGCGCGCCGGCTTTTTCTGCATCACGACCCA 227342 28 100.0 32 ............................ AGAACAGGAATTATCGGCTACCCGTTCGACAT 227402 28 100.0 32 ............................ TTATCCTTCTTGCTGCGAGGTTCGGTAAGAAT 227462 28 100.0 32 ............................ ACGTCAAAAACTATCAAACGCTGGGTACAAGA 227522 28 100.0 32 ............................ AGTGCAAAAACAGCAGATCGATACAATCAACA 227582 28 100.0 32 ............................ TGAGCGAGCGCGCCGAGTTGTTGCAGGGTGGC 227642 28 100.0 32 ............................ TGCCAGAAGGGGGCGACCTGAACAACGGTCGG 227702 28 96.4 32 ...C........................ ATATGTCTCGTTCAACCACCCTTTATTGCCTT 227762 28 96.4 32 ...C........................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 227822 28 96.4 32 ...C........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 227882 28 96.4 32 ...C........................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 227942 28 92.9 0 ...C.......C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCTTGACTGCTCGTCTCCCCGTCGCGGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTTCTACGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAGCATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGATAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 237499-238125 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQMS01000002.1 Hafnia paralvei strain CITHA-6 NODE_2_length_834549_cov_12.0128_ID_2501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 237499 28 100.0 32 ............................ GCGTTTTCGTGCTGCTCCCACGCAGCCTGAGA 237559 28 100.0 32 ............................ CAACTACGCCCGCAGGTTGCTACATCTGCACT 237619 28 100.0 32 ............................ AATGTTGTATGAGCCAAACTTTGTGCCGGCAA 237679 28 100.0 32 ............................ AACCAGACCCCGAAAGGGAGCTCGGTGCTGTC 237739 28 100.0 32 ............................ AGTATGTGAACAACTGACTGCTGATGGATTCC 237799 28 100.0 32 ............................ AAACCACAAACGCGGCACACCATGCAGCTGCA 237859 28 100.0 32 ............................ GAAAACCGAAACCGAACAGCGAAAAAAACCGA 237919 28 100.0 32 ............................ CATGAGTGTGGGTAGCCGTTGCGCGCTAATTT 237979 28 100.0 32 ............................ TCACAATTTACAAGAAAATTGCTCAATAGATC 238039 28 96.4 32 ............A............... CAACGGAAACCCGCCGCTATCGGGAGAGAGTA 238099 27 89.3 0 ...A........A...........-... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCCGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGTGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCTCGGCGATGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //