Array 1 252587-253164 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PXGN01000002.1 Escherichia coli strain VC1048m Contig2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    252587	    29	 100.0	    32	.............................	GCCATCAGCTATAACACGCGCCGCTTCATCAA	
    252648	    29	 100.0	    32	.............................	CGCAGGTCGGCGAGCATGTTGCCGGGTTCGGG	
    252709	    29	 100.0	    32	.............................	ATAAAAACCATTTGTCAGAAGCGGAAAAAATC	
    252770	    29	  96.6	    32	............T................	AATCAGGGCTGCGCGCAGTGTGTGCGTGGGTC	
    252831	    29	 100.0	    32	.............................	AGGATGCTGGCAAGCCTGCCATTTTTCGTGCA	
    252892	    29	 100.0	    32	.............................	AGGATGCTGGCAAGCCTGCCATTTTTCGTGCA	
    252953	    29	  96.6	    32	.......T.....................	CCGACTGATAAATCCACCTCATGGCAGGTCTC	
    253014	    29	 100.0	    32	.............................	TTTTAACCCTCAAAAACGTATGGCTTTGGGTA	
    253075	    29	  96.6	    32	.T...........................	GGCGCACTGGATGCGATGATGGATATCACTTA	
    253136	    28	  75.9	     0	..A........C..T....A..-.C...C	|                               	T [253155]
==========	======	======	======	=============================	================================	==================
        10	    29	  96.6	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTTTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGTGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT

# Questionable array : NO	 Score: 6.09
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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