Array 1 126307-124742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKI010000015.1 Paenibacillus lactis strain DSM 15596 Ga0454112_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 126306 32 100.0 35 ................................ TCTCGGCATTATCAAACACCGGGAATTGACTCAAA 126239 32 100.0 34 ................................ GTCGGAACTCCGGGGAGAGAACATGGAGGGGTCA 126173 32 100.0 36 ................................ AACATCGCTAAATAAGGTTGTAAAGATAGTGGACAT 126105 32 100.0 34 ................................ AAATTTTAGACGGGGATGAACGGGCTAAGTTCAA 126039 32 100.0 33 ................................ ATTCTTGTTTGTGTCCGCTGACGGTCCGCGATT 125974 32 100.0 36 ................................ AGAAGATAACCACCCCATTCGAGAATACTAACTCGG 125906 32 100.0 35 ................................ GCCATCACGATCCTGTGGTGCAGCGAGGGTATTTT 125839 32 100.0 35 ................................ AATTCCAAAAGGCGGTTGATCAGGACGAAACCACG 125772 32 100.0 35 ................................ TGGAAGGAAGCAGCTGAGAACCAACAGCAGAACAA 125705 32 100.0 35 ................................ CGATCAAGTCATGTTAAGTTAATAATATCACGAAC 125638 32 100.0 36 ................................ AACGCATTGGAAAGAGCAATCGAATCCGGTGTACTC 125570 32 100.0 34 ................................ TCACGAAATACTGGAAGGGGAATGATGGCAAGGT 125504 32 100.0 35 ................................ GTCCTGGGCTGCTGTTTATGAGTACGGCAGCGAAG 125437 32 100.0 34 ................................ AAACGCCAATTTGACGAGGACTACCGCATTAAGT 125371 32 100.0 34 ................................ TCGTAGACGTAAGAAAAGCATTAGGCTTGGCCTA 125305 32 100.0 34 ................................ TGCAGTAGCTGCAGGGGATAAATTCTAGACTTCG 125239 32 100.0 35 ................................ TTAGTATCGGTTATTGCGATGCTCTCCATTTTAAA 125172 32 100.0 33 ................................ TGACGCTGGCATTGCCCGTCATGATCATTCATC 125107 32 100.0 33 ................................ GCATCAAATGTGGTCGCTTGTGCCATCGTTTTT 125042 32 100.0 34 ................................ CTTGTCAGGGTTGTCTGTCCGCGTTTCTGGCTCA 124976 32 100.0 34 ................................ GATTTCCTCTTCGGCGGCAACCAACGAACGAGCA 124910 32 100.0 37 ................................ TATTATTGGCGGAAGCATAAAACGGTTCTGCGTCTCC 124841 32 100.0 36 ................................ AGAACGGTAGCGCACCATTAACGATGGCAGCGCAGC 124773 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 99.9 35 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : TTCACTTCACGTAAATGCTCATCGACCGTTTGAATTTTTCCGTCTGACTGACGAATATGAGCAATATAAGTCATTACACACCCCCAAGACCCAAGACTTAACACCTACAAACGATCCCTACCAGAGATTGAAGACCTATAATACTCATTCGCCACCAACTGACAATTTCCTACCAATAATTCAAAAAAATAAAAAAAGCGATTTTATTACGACAAAATAGAAGAGAGAGGACCGATCGAAATAGTCGCAGTGAAATAAAAGCTTGGCAACTGGAAAGTAATCAAGTAATTTTAAATCAGGCTGCTTGGTTAGAAATTCAAGTGCGAATGTGAAGCTCGCATGAAATCCCCGGGCCCTTCGCACCTCAGAATTTGTCGAATAATCGAGAGTTGTTTCATCCTGACAAAAAGTCAAGTATGAACCTCTGCCTTTTTTCGATAAATGTGGCCGAGAGCACTTTACATTCATACCTAAAATGGATTGATTACTGTTATTTCACG # Right flank : AACCAACGCTGGAATTGGTGGCTCGGGAGTCTAGTGTCCTACCCTACATGTATCAGCAATATGTCGTTAAAAATCAGATGATTGTTTTATCTAAAAACGTGGATATATAAATCGTCCCCATAGCCTCTACCCGGACTACGGGGACCATTCCTTATCTCTTAAGTTTAACTTACTTGCCGCCACTTACGATAACGGAGGCTCTTCCGGCTTCACTCATTTGGAAGAGCCTACTGATCATTTGCGGGATTTACCGCCGTATTTTAGAGGAGCTTACATCAACCTCATTTGCGGATTCCGCAATTCCCGTTTATCGCTCTCCTATCGAGTATGGTCCAATTGCCCCCCAGCAGCGTCCATCTCCGCCCCCCGCTCATCCAGCCGTTCCTTCAACTCCTCCGCATCATAACGGACGAACGCCCCGTTGACGGTACCGATATAGACTTCGCCATCGGCAATATTCAGTGCGCCGCTTCTTGCCGCCTGCTCGCGCAGATCGACGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 135043-135342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKI010000015.1 Paenibacillus lactis strain DSM 15596 Ga0454112_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 135043 32 100.0 36 ................................ AAAGTATCGCTCCCAGAAGGGTTTGGTGACGATGAC 135111 32 100.0 35 ................................ CATCATATCCTTTTGCCAGTCTCTAACCTGTTTAT 135178 32 100.0 34 ................................ TATATCGGGAGCGATAAAACACTAAATTCCAGAA 135244 32 100.0 35 ................................ TGGCTTGGTCCGGATGGGTTCTACGACTACATGGG 135311 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGGTCCCTTTGTTGATCTTGATTACTTATGATGTAAGCACGACCGACAGCGAAGGTAGAAGAAGGCTTTCTAGGGTAGCCAAAACATGCGTGGATTACGGTCAAAGGGTTCAGAATTCCGTCTTTGAGTGCATTTTGGATGCGACCCAGTTCCGACGTTTGAAATATGAGCTTGAAGAAATCATTGATAAGGACCAGGACAGCTTACGGTTCTATAATTTGGGCGACAACTATAAAAAGAAAATTGAGCACATCGGAGCCAAATCGACTTACGATATGGAAAGTCCGTTGATTCTTTAATGGTGCGAATGTGAAGCTCACATGATTTTTCCGGGTCCTTCGCACCTCATAATTTGTCGAATAAATGTTGGTTATAGAAGTGAAGCGAAAAGTCAAGACTGGATCCTTTCATTTATGATATGGATTTAACCAATAAGGTTGCGAATTCATACCAAGGTGAGATTGCTCAGCTGCTTTTCGCG # Right flank : AAGTTCTGGAGTGCTACGATAAAAATGCAGTCGAAAAATACCCTCGTATGAAATAAAATGAAAGCTGACGAGAGGACGGGAGACAATGAATCGATACGACA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127-1552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKI010000040.1 Paenibacillus lactis strain DSM 15596 Ga0454112_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 127 32 100.0 35 ................................ ACCGGGATAAATTCAGTAAAGCGAAGAGTTACGGT 194 32 100.0 35 ................................ TACGAAACCAAGATCAAGGGCTTATCAAGTGGGTA 261 32 100.0 34 ................................ TGCTGGTACAAACGTTATGTACGCCGGTGGAAAA 327 32 100.0 34 ................................ TGGAAGGAAGCAGCTGAGAACCAACAGCAGAACA 393 32 100.0 34 ................................ CTTTGCAAGCTTATTGATACTACGAATTTTTCGT 459 32 100.0 33 ................................ AAAAGAAAATAGACGAGAAGTTATCCAAAAACG 524 32 100.0 34 ................................ ATTTAAATAGAATGAGCATCACGATAATGATGTA 590 32 100.0 34 ................................ GCTCATTGGCTCTCACCCTCCAGTAGCTGCCCTG 656 32 100.0 36 ................................ TCCCCGGTCCAGTCGCTGGATACCTTGATCCCAAAT 724 32 96.9 36 ....A........................... ATATCGATCTGTTCCGCGAACCTCGGCCACAAGGGA 792 32 100.0 34 ................................ CGATACTAGGCCTTGCCGCGACGATCATTACATC 858 32 100.0 34 ................................ AGGTGGTATTTGTCCTGCCGAACGGCCTAGACCC 924 32 100.0 34 ................................ TTGCGCAACGAGACGACGGCCGAAACGCTTGAGT 990 32 100.0 35 ................................ CAGTGCTAATCTGCGAAATCTTATTCGCCAACACC 1057 32 100.0 35 ................................ ATTGCTGCCTCGATCTCAGCTTTATACCTTTCGGC 1124 32 100.0 33 ................................ GAAGATATTACGATGGAAAACTACGATCCGCAT 1189 32 100.0 33 ................................ TGATCGGCCTTTGGTATCTGCTATTGAGATTAT 1254 32 100.0 33 ................................ ATGAAGGCGTACTGCTGGATCTCCATGTATTCA 1319 32 100.0 34 ................................ GGTACACAATGGGAGGACCTAGAAAAGGACGTTA 1385 32 100.0 34 ................................ AATATAGCAGCGGGGAGAAACACAAAGTTCCTGC 1451 32 90.6 38 ..........AT............G....... ATGTCCTTTCAGCAGCCTCCAGCCTGCCATGCTTCCGC 1521 32 75.0 0 ..T..........T......T...T..TGGC. | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 98.3 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : AGCAATTTATCGCGAAAGAATGCTGTCGCAAGCAGCTTAGTAACGGGATTTCTGTATGAGGGTGTTTTCAAACTGCACTTTTTTTGACAACTCCATTCCTCTGCACTCCTAACAAATCCTAACATTG # Right flank : TCCGCAGTTCATTACAGCGATCGGTCGATTTTGATGACTTATACTCTTCATATAGAAAGGGTTACGTGCGTAGGGTCGGTTCGGGAAGCCGCATGTGAGTATAATTACTCCATGCGGTTTTTCAATATATATGACGATTGAGGAAAAGGTCAGAGGTGCTTCTCAAGGCTTCCCCTTACAGGGCATATTGTAACTTCCATCAAAATATAGTGAAAGCAGAAGGCTTGACTTATACGAGGGAGCTACAGCCGGGGTTCCGGCTGTGCACGGTCGCACAGCTCTGACTAGTCCCTAAAAGGATGTGTTGAGGTGCCCTTGCCCCGCCTTGTGTGCCCCAACTAAGTTCTACGGCCAGCCCCAGACTTCCGGGTCACTCTCTTTGGACCCATAAGGTGCCCAGCCTAGCCCTTTGGGCCTTGTACTGTCTTTCCGGGCGCATTAGCCCGTCTCAAGATTCCGCAACCTTGTCTCGACCGATCAGCCCCGTAAGGGACAACGCT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //