Array 1 205528-208415 **** Predicted by CRISPRDetect 2.4 *** >NC_009828.1 Pseudothermotoga lettingae TMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 205528 30 100.0 38 .............................. CTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTA 205596 30 100.0 36 .............................. TCGCCTTGCATACACTGGGACGGATTGGAAAACTTT 205662 30 100.0 37 .............................. CAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGT 205729 30 100.0 37 .............................. AAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCAT 205796 30 100.0 37 .............................. GTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTT 205863 30 100.0 36 .............................. TAGTGGTATCAAAATTTGTTTATATCACCCAGACAG 205929 30 100.0 37 .............................. GGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATA 205996 30 100.0 37 .............................. TGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACA 206063 30 100.0 36 .............................. CACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGAT 206129 30 100.0 38 .............................. TCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGT 206197 30 100.0 36 .............................. CTGATATGAGCATTGCTATTCCCAACACAACCACAA 206263 30 100.0 36 .............................. AACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCC 206329 30 100.0 37 .............................. TTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGG 206396 30 100.0 37 .............................. TGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCC 206463 30 100.0 36 .............................. CAGTATAACCAAGTGCTGAATCATACCCACCAGCAT 206529 30 100.0 37 .............................. ATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTT 206596 30 100.0 36 .............................. AGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAA 206662 30 100.0 36 .............................. ATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCT 206728 30 100.0 37 .............................. AGAAGAAAACCATACGATGACAAAAAGATCGATGCAC 206795 30 100.0 36 .............................. GATGCTGACAAACATCTATACATAACAGTAGCCGAG 206861 30 100.0 35 .............................. CGCTTCTTCTTCAAAACATGTCTCAACAATTTGCT 206926 30 100.0 36 .............................. TTAACAATATCATCCGAGCTAAATATTCCGAATACT 206992 30 100.0 36 .............................. GGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGA 207058 30 100.0 35 .............................. TCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTT 207123 30 100.0 38 .............................. GGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTG 207191 30 100.0 36 .............................. CAACTTGATTCAATTGAGATGATCGCGAACACGTCC 207257 30 100.0 37 .............................. TGTTACATTTGCATATGGTAGTTATTGGGACTTTGGT 207324 30 100.0 37 .............................. CGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCT 207391 30 100.0 36 .............................. TGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTT 207457 30 100.0 37 .............................. TTCCACTATATCCTTCAATTCATTCAAATCATCGATG 207524 30 100.0 36 .............................. AAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACT 207590 30 100.0 36 .............................. GGATTTTCGCTATTGGATAGTTTGACTCCAGAACAG 207656 30 100.0 36 .............................. TTGGATATTTGAATGAAGTATCGCTAATATTTGGAA 207722 30 100.0 36 .............................. TAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTG 207788 30 100.0 35 .............................. GACTTCGATTGTGAAATTCACACCATTAATGGGTT 207853 30 100.0 36 .............................. CAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGC 207919 30 100.0 36 .............................. TTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCT 207985 30 100.0 37 .............................. CCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGAT 208052 30 100.0 36 .............................. CGTTCTACTCAGGCTATCGCGATCTTGCACAATCTT 208118 30 100.0 39 .............................. GCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCT 208187 30 100.0 36 .............................. TCAGAAATTTCATCAGCAAGAGCATCAATAGACGTT 208253 30 100.0 37 .............................. TCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTG 208320 30 100.0 36 .............................. TTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTG 208386 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 44 30 100.0 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : AACCAAGGACGTAATCAAAATGTTTCTTGACGGCATAAGCGTTGAAAATTTCACCATCGTGGAATTTTACACCTTTTCTAAGGAAAAACACGTAGGCGGTCCCGTTTTCTTGAATTTCCCATCTTTCGGCAAGAGATGGAATAATTTTGAGATTCTCATCTACGTCTATTAACCCTTCAAAAATGTGACTGGCAACTATGTTACTTACTGAATCTGGAATATTTGGACCAAGCAAAGTTGTGATGTCAACCCCGATGAGGAATCTCAACGTTCCACCAAGATTTGCCGCGAAAAAGGACGTAAAAAGAAGTAAAATGCACCAGGAAACGGTTTTTCTCAATAAATTCACCCCCTTTTGGTATATTTAGCCAAAATTCTATCATGGCAAAATTATCTTGTCAAGCTTTTTTACTAAATGTGTAGAAATAATAAACATCGAAGAGGAATATTCAGGGAAAATGGGGAGTTTCGATGGGCAAAAATGGTTGAAGTGTGGCTAA # Right flank : CCCATAAGATACTGAACAAATAATAATCCCCAGAAACAGATTTGTCAATAAATATTATACTATATGGCATGCAAGAATATATAAAGGCGAGCATTAAAAGCGGGAAAATTTATAAAGGCACATAGTAAAAAATGTACGGGGAAAAATTACTTATTGGAGGTTCTGGAAAAAAGGGCGATTTTGGGGGTGTTTGTTAACAAATCTTAGAAATTCAAGTGAAATGTCACAAGGTTATTGAATACAATCTTAATAAAAATTATTCAATCCACAAATTGCTATTCTATATAATAATTCACAAGGTTAGAATTATTTAATTTATAAATCTATCAATCACTTCTCTTAAGTAATTCTCGTCTATTATGCCAGGTTTTTCATGTATTTGTTTCTTCACTTTTGCAAAATGATGAATTAATAAGTGTTAAGTTTAATCAAAAAATCATCAGTTCCTGGCTTCTTTGAAAACCAGTATATTCGTCATACCAATAATTGAGGTTATCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 1134586-1131044 **** Predicted by CRISPRDetect 2.4 *** >NC_009828.1 Pseudothermotoga lettingae TMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1134585 29 80.0 37 AG...T..AT-................... CAGAATGGGATCCAGATGCATCAGATTTTTTAGGTAC G [1134580] 1134518 30 100.0 36 .............................. GGATAAAAATTTTGCAAAACCTGCAGGATCGATTTT 1134452 30 100.0 38 .............................. GTCATATTCTTTACCTAATTTATCTGGATGATATTTTT 1134384 30 100.0 37 .............................. ACGGAGCATGCAATAGCAAAGAAAAGGATGGTTGGAA 1134317 30 100.0 36 .............................. AGTTACTCCAATCCTTTTCCTCTACGTCCTTCGCAA 1134251 30 100.0 36 .............................. TGTTCGTGAAAAAGGCTATTACAACGAGCCGCATTA 1134185 30 100.0 36 .............................. ATAGAGAATGCAAAAGCAAAAACACCAGAATATGTT 1134119 30 100.0 38 .............................. GTTTCAAGAAGTTCTATTCTGTTATTAGTTCTAACCTT 1134051 30 100.0 35 .............................. GAAGGTTGAAGAGAAGAAGGAAGAAACTAAAGAAG 1133986 30 100.0 36 .............................. ATAGAGAATGCAAAAGCAAAAACACCAGAATATGTT 1133920 30 100.0 38 .............................. GTTTCAAGAAGTTCTATTCTGTTATTAGTTCTAACCTT 1133852 30 100.0 35 .............................. GAAGGTTGAAGAGAAGAAGGAAGAAACTAAAGAAG 1133787 30 100.0 36 .............................. GGGTTATTGCAGGTATTGCAGTTGTTATGTTTTTTA 1133721 30 100.0 36 .............................. ATCCATTACTTTATGCAAACTACACACCAGACCAAA 1133655 30 100.0 39 .............................. ATATAAGTTGTATCCGAAATATGTTTCTGCGTATGCAAT 1133586 30 100.0 36 .............................. AACTAAGTCCACAACCTACACAACCTACACAGCCAA 1133520 30 100.0 36 .............................. TGAAATCATGGCGGAGTTCATGAGTGTGTACAACAA 1133454 30 100.0 36 .............................. AACGAAAATAGACTGCCAACCATATTCACCATTATG 1133388 30 100.0 36 .............................. TATCCCACAACCAAAGTGGAATTTTATTATAAGAAG 1133322 30 100.0 36 .............................. TCAGAAAAAGTTAACGTAATAAAAATTCTAAATTTG 1133256 30 100.0 38 .............................. TAATAATCCCAATTTGTTTTTGGTGTTTGCCAACCACT 1133188 30 100.0 37 .............................. AACACACGGCGAAATTCTGGATTTTTTTGCAACGTTC 1133121 30 100.0 36 .............................. AAGTGTTACTGAGAGTGAATTTTTCGATACTCCCGT 1133055 30 100.0 36 .............................. AGGGATCAAGTGGAATCTCTCGGGCTCGCACAACAT 1132989 30 100.0 34 .............................. TCGGCCGTTTTTAAAAGCTGATCTCTCAATCGAT 1132925 30 100.0 36 .............................. AATCGAATGAATACTTTTTATTCTTCCTCCTGCTAT 1132859 30 100.0 37 .............................. GAACTCTCCACGGAATTCGCTCTTTATGCCCGTGCGT 1132792 30 100.0 39 .............................. CGGTATCAATCACTGGATCAACTTATACGTATACTCCAA 1132723 30 100.0 37 .............................. TGTACCACTTCAATTTTTGAACCAATTCAAATCTTAA 1132656 30 100.0 36 .............................. ACCATATATGGTTATTCTTTATGCGGTGATTATGTT 1132590 30 100.0 36 .............................. ATACAAATGAGGGTGAGTTAGTTTTGGACTTTGCTA 1132524 30 100.0 36 .............................. TATTCTTTCCTGGCATTCTCTTAATGTCCAGAATGT 1132458 30 100.0 36 .............................. CAAGGCTGGAACTGAGATTTTGGTACAAGGAGAGCG 1132392 30 100.0 37 .............................. TCTTCATGGTTTTGTTGGCGTTTATTGCCAAAAGATT 1132325 30 100.0 36 .............................. AACAAAAAGAAAAAGCTTACAAAAGGAGTTAGAAAG 1132259 30 100.0 35 .............................. TAAAGATGCGGTGTACGAACAGGTCATCATGCCGA 1132194 30 100.0 35 .............................. TACCGATTTTTGAAGAACACAAACGCGGTAGAAAC 1132129 30 100.0 37 .............................. TCTTCATGGTTTTGTTGGCGTTTATTGCCAAAAGATT 1132062 30 100.0 36 .............................. AACAAAAAGAAAAAGCTTACAAAAGGAGTTAGAAAG 1131996 30 100.0 35 .............................. TAAAGATGCGGTGTACGAACAGGTCATCATGCCGA 1131931 30 100.0 35 .............................. TACCGATTTTTGAAGAACACAAACGCGGTAGAAAC 1131866 30 100.0 35 .............................. GGACAGGAATATGAGGACGAGGATCTTGACGACTT 1131801 30 100.0 36 .............................. GATGAAAGGATCTATGACGATGTTGAGGATCTATAC 1131735 30 100.0 36 .............................. AGAGATTTACTTACTGGGATAATTATTTTTTCCATG 1131669 30 100.0 36 .............................. ACAAGTAGCTAACCTGAAAGACCTTATTTCAGCTTA 1131603 30 100.0 36 .............................. ACCTCCTACTTTGAGTATTGCCCAGTTGAAAAAGAG 1131537 30 100.0 36 .............................. TACAACCAAGGATTCATCAGAAATATATTGTGATAT 1131471 30 100.0 37 .............................. GGCTGTTCGCCAGGTGATAAGTCTTCTGCAACTTGTA 1131404 30 100.0 37 .............................. GGTGTATAGTAACCTATTGCCGTGGTGTTATATCCTG 1131337 30 100.0 36 .............................. ATGCCCTTGGGCAAGTAAAGAAGAATAGGAGGGATT 1131271 30 100.0 36 .............................. CTCTAAAAATTCATGCGAGATATATGGATTAGCACT 1131205 30 100.0 36 .............................. TCCACTACAAGCATTCACAGAAGGTCTTTATATAGG 1131139 30 100.0 36 .............................. CCTCCTCCACCGCATCCGGGAAAACGGCCAAAATTT 1131073 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 99.6 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : GTTCTTTTTCAAGGATAATTTCCTTTTCATGAATCTCCAAACCCGGAACCCCATTAACTTCACCTTGGCGGAGTAATTTTTTTAGGGTATCTAATTCTTGTTCATCAAAAGCTATCACATATGATCCTATACGTTTTATTTCGAAATCAAGCTCTTTTGCAAGCTGAGTATAAAGTTCATTTCCCTTTGCACAGAACTTTGCTCTTACTGAACCGATTGGATCATCATAACCAGCGTGCAATATAGCTGAATTAGCCTTTGTAACACCCCAGCCTATATCAAGGTTTTTTTCTATTAAAGTTATTTCCAGATCATACATAGAAAGCTCTCTTACAATTAAAGCTCCTACCACTCCTCCACCAATCACTACTACTTTCATCAAGAACACCTCCAAAGAAAAAAGCCACACCCCAAAAGGGATGTGGCTTTCTCCGGGTCTCTTTACCACACCACTTATATTATGCCACGATTTTCCAGAAAATCAATATTCAGGAAAAATA # Right flank : CCATAAGATACTGAATAAATAATAATTCCCAGGAACAGATTTGTCAATAAATATTATACTATATGGCATGCAAGAATATATAAAGGCAAGCATTAAAAACAGGAAAATTTATAAAGGCACATAGTAAAAAATGTACGGGGAAAAATTACCTATCGGAGGTTTTGAAAAAAAAGGCGATTTTTGGGGTGTTTGTTAACAAATCTTAGAAATTCAAGTGAAATGTCACAAGGTTATTGAATACAATTTTAATAAAAATTATTCAATCCACAAATTGATATTCTCTATAATAATTCACAAGGTTAGAATTATTTAATTTATAAATCTATAAATCACTTCCCTTGAGTAATTCTCGTATATTATGCCAGGTTTTTCATGTATTTGTTTCTTCACTTTTGCAAAATGATGAACTCCACTTTCATAGAAATCAAACAATGAAGTGTCCTGGTTCAAAAAAATTCCAATATAATCTGCTTAGGAGGTTAGAAAATGAGAATAGCATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //