Array 1 64252-62131 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYZ01000003.1 Tessaracoccus sp. OH4464_COT-324 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 64251 37 100.0 37 ..................................... AGAAGCTCCGCCAGTTGGGGCGCGGAGACGCCCAGAA 64177 37 100.0 36 ..................................... TGAATGGGACCTCATCCTTACCAAGGATGCGCTCTA 64104 37 100.0 35 ..................................... CGGTTGCCCGCAAGCCATGCGCGGTAATTACTCCC 64032 37 100.0 35 ..................................... GTTTCCGGAGCGGTACCAATCGACCTCGATCCCAG 63960 37 100.0 37 ..................................... CCGTTCAGGCGATTGATCCGGATCTTCTCGCATTCGA 63886 37 100.0 34 ..................................... CAGCGCCCTGCTCGCCGACCGCTCGCCTGGGCGA 63815 37 100.0 36 ..................................... CTCAAACCAGGCGATGAAGCTCACTGGAACCCTAAG 63742 37 100.0 37 ..................................... CAAAAAAATTGGCATTGACTTAAAGCACGCTGTTGAG 63668 37 100.0 35 ..................................... GGCGCAGCCCTCAGGGAGGAGTGCCTGGACCGCCT 63596 37 100.0 34 ..................................... GCGATGATGGTCAGCGACATGGTGGACATCAGTC 63525 37 100.0 34 ..................................... GCACAGTCCGACCACCACTCCAGCGAGGACCGCG 63454 37 100.0 35 ..................................... CACCCCCAACCGTCAGGGGTGCTCGGGCGGCTGGT 63382 37 100.0 35 ..................................... AGGTAGGGCAGGGCCTTTTGAATGCGTTCGCATCC 63310 37 100.0 33 ..................................... TAATCGCAGATCAGCAAAGAAAATAGTATTTAA 63240 37 97.3 32 ....G................................ CTTCCAGGGCCACTTGGTGACCGTGGACCCGC 63171 37 100.0 34 ..................................... GTCGGACGAGGATCTGGATGAAGCTCTCGCTGGT 63100 37 100.0 32 ..................................... ATCGCGGCGGTTCCGAGCGGCTGCCCCTTTGG 63031 37 100.0 34 ..................................... CTAGCACCTCTGCTCGCGTCATCGGCTCGCTCAT 62960 37 100.0 35 ..................................... ACGGTTGATCCCGCGGTAGAGGAAAGTAACCTCCC 62888 37 100.0 37 ..................................... CAGCCCGGGAACCCAGGTAACCTTGTCCAGGTTCCAA 62814 37 100.0 35 ..................................... GGTGAACTCCCCGCGAGTCGCTTTTCTGTTTGAAA 62742 37 97.3 35 ..............T...................... GCCTTCCAAGTCAACGGAGATGTGCTTGTGCTCTC 62670 37 100.0 32 ..................................... AAAACTATCGACGAGCTTGGTAATTCGTCCCA 62601 37 100.0 35 ..................................... ACGCCGTCATTGTCGCGGAGCCGAAGACGTTGCCG 62529 37 100.0 36 ..................................... GGTAGTCGTTCACGACTTCGCCGTCAACGCGCATGT 62456 37 100.0 34 ..................................... CCCGCTGCCCGGGCGGCCTCGATTATGGCGAGCA 62385 37 100.0 34 ..................................... TCAGGAGTGCCGTCGAAACCCTCGATCCCCTCAT 62314 37 100.0 38 ..................................... CACCTCTGTGCCCGAGTAGCCCATGCGTGAGCATGCGT 62239 37 100.0 35 ..................................... AGCTGGACGGTGCGCGATCCGTCCTTGTTCTCGAA 62167 37 86.5 0 ........C....................G....GCG | ========== ====== ====== ====== ===================================== ====================================== ================== 30 37 99.4 35 GTCAACGATGACCCCGCACGACAAAGTGCATTGAAAC # Left flank : GGATCCGTGCCGACGACGCCCTCCCCGGGCGCTACGTGGGCGCGATGGTGGCGCGGCCCGCGGAGAACGACCTGGCGGAGGTGCAGCTTTGGGCCACAGACAGCGGAAAGATTTCCGCAGAGGCCGGGCGATCCTTCCGCGCAGGCGGGCCGGAGCCCCGGCTGTGGGAGTACCGCGTGTGGGTGGGTGAAACCGAGCGGATGCCGCTCACCTTCTACTGCGGAGAGCCCGGAAAAGCAGAGACGGGCGCCACCCCCGGCCGGTAGAGTGGTGCGCGGTGGGGCCCAGCATCCTCGACGGCTGCTCGCCCCACCAACTATCCGGTACTTGGGGAAACCTGAGTCGGGGTTCGGCCAGAATGCCATCGAGTGTGTATGCAGTCTGACAAGGGGATACGCACGTTTCAGGAGGTGCACCACCATGCCGACGAGGCAACACGCAGGCCGTGTGTGCAACCGGCCTGCAAAGAACCTTGTCAGGCGACCAATTTTTAGGGTACT # Right flank : ACTGGCCCGGGGCTGTGTTTGCCCGCCTAGTGGATTCCGCTGAGTGGCGGTCTGCTCGTGGTGTCGTCCAAGGGCGACTGGTTGGGTTGGTGATGTTGTGAGTTTGGCGCTCGCGACGGTGTGGGTCTCTTTCCGGGACGCCAAGTGTGGTGGGTGGTGGCTACGGACGTCGGATGTGGGCGTGTCCCGAGGCCCCGTCTTGGCAGCAGGTTATGTGGCCGGTTTGCACGATTTCGCGAATCGCGCGCGTAAAGCTGTTTTCGGCATTAGTCTGATGATTGATCGTCGTGCTGCTTTGGAGGGAGGCGGCAGTCTTGTTCAAGATAGACGAATTGTGCGCGATTTGGCGTCGCTTGGAGGCTGAGGACGCCGCTGATGGCATGTTGTCCTACGGCACCCGCAGGTTTGCGCAGAACGCGTCGGAAGAGCTGGAAACGCTCGCGCAGCAGCTGGCGGATCATTCGTGGCGGCCCGCGATGCTCACGCCTTTTGTGCTGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAACGATGACCCCGCACGACAAAGTGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 14675-27776 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYZ01000017.1 Tessaracoccus sp. OH4464_COT-324 scaffold_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 14675 29 96.6 32 ............................C TGGAGACCGTGTCCAAGCAGGTCCTCGAGGCC 14736 29 96.6 32 ............................A ACGTGCACGTGGTCGAGGTGACGGTCGCTGAC 14797 29 100.0 32 ............................. GTGACGTCGGTCAGCTTGAAGGTGAAGGACGA 14858 29 96.6 32 ............................T ACCCAGACCTACGTTGCGTCGCCGTTTAGCCG 14919 29 100.0 32 ............................. CCAGCCTCCGCTGCCAGCCGCAAGATGATCTG 14980 29 96.6 32 ............................T CCGTCGATGGTGTCGCGTGCGCTGTTCAGGCC 15041 29 96.6 32 ............................C ACCATCTCATAGAAAGAAAGCCTTAATGCCAG 15102 29 96.6 32 ............................T ACGCACGGCTAGGATGGCGGTTTTGCCGGCCA 15163 29 96.6 33 ............................C GCAAAGAGCCACTTTGTGTCAGCCTATTGCAGT 15225 29 96.6 32 ............................C ACATCCGCCTGGCAGCCCCGTGAAGCCGACCA 15286 29 100.0 32 ............................. GAGTAGAGGTGCTAGCCGCACTCCCCGCCGCC 15347 29 96.6 32 ............................C GGCGCAGCCGCAGCCGGTGCGGGGGCCGGGGT 15408 29 96.6 32 ............................C CCCCGAGACCCGATGGCCGCGCTCAAGATCTA 15469 29 100.0 32 ............................. TGGGTTCAAACATGGTCGTAATCTGTGTGTTC 15530 29 96.6 32 ............................T CGCCAAGCATCGACTGGTGACCTGTCAAACCG 15591 29 96.6 32 ............................C CAGAGCGCCCTGACCGGAAACCACCCCCACTC 15652 29 96.6 32 ............................A CTCGGGTTTGGGTGTCGGCGTCGAGGCCGGCG 15713 29 96.6 32 ............................T GGGGGGCGTCTCAGCAAAACGGCAGACGAGCC 15774 29 96.6 32 ............................T GATCGCGTCACGGCGGGCCATGGCCTCGTATC 15835 29 96.6 32 ............................C CAGCCGGTGTCCACGGGGCACATCTGCTTGGC 15896 29 96.6 32 ............................C TCTGCCGGCGAGGGTCCGCGCACGCTCGGGCC 15957 29 100.0 32 ............................. GTCATTCCATGTGGCCGGGCCGTCGAGGCCCA 16018 29 96.6 32 ............................T AGTCACGGGGGTCGAGGCGGCTTCTGAGGGCA 16079 29 96.6 32 ............................C CCCCCTCGGGGGTTGCGCACTGTATATGGATC 16140 29 100.0 32 ............................. GTTGAGCGCTGCCGAAGCCTGGACGACCTAGC 16201 29 100.0 32 ............................. GCCTTGGTTGACGGGCTGGTCGACGCGGGCGT 16262 29 96.6 32 ............................C CTGACCAGCGCCAACCTGCGCGGCGCCAACCT 16323 29 96.6 32 ............................T GAGCGCCTCCGAAGTGCTGCGGCAGGTCGAGG 16384 29 96.6 32 ............................T GGCGGACACGATTTGTGGCATGATCGTCGCGG 16445 29 100.0 32 ............................. GCACGGCCCGCAACGGTGAGGGCGGGACGGAC 16506 29 96.6 33 ............................C GAGGACGTACGGCGTGTCATCGACGCCTGCTGG 16568 29 96.6 32 ............................C CGTGCACCGCCGACATCACGGCCGCGCGCGGC 16629 29 96.6 32 ............................C AGAAGAGCCCCCTGTACACCATGCGCCCTCCA 16690 29 96.6 32 ............................C CGCACGCCCCCATGCCAGAAAAGACCGACCCA 16751 29 96.6 32 ............................T ATCTTCGAAGCGCTAGCCTCCCTCACCGGTGC 16812 29 100.0 32 ............................. GCGTGCTCCGTGGCGAGATGTTCCAAGACTTC 16873 29 96.6 32 ............................C TGGAATCCCGGCCTCCGTATGGGAGTCCGAAC 16934 29 96.6 32 ............................T GTGTCAGGGTGGCGCACGGGTATTCGTGGCCG 16995 29 96.6 32 ............................C ACGCCGAAGAGGGAGCCGCTCTGAGCTTCCGG 17056 29 100.0 32 ............................. CGACTCGAAGTAGTGAACGGCGCTCTCGACCT 17117 29 100.0 32 ............................. GAGCCAGCGGCCGACGCCCTCTACGGCGTCAG 17178 29 96.6 32 ............................C GGGAGGGCAAGGAGTCCGCCGACGGATTCAGC 17239 29 96.6 32 ............................T CTTGCATAGCCACATTTGTACTGCATTGCAAG 17300 29 96.6 32 ............................C TGCGCTTGCGGGCAGCTGAGGTCAAGGCCGAG 17361 29 96.6 32 ............................T TGCAGGATGGGGGTCATACCCCGAGATGGTGA 17422 29 96.6 32 ............................T ATGTGGCGCGCCATCCAGCTGTCCCCCGCCAC 17483 29 100.0 32 ............................. TAGGCAAATGGGGCGTCCAGGGGGCCCTCCTC 17544 29 100.0 32 ............................. AACGCCAAGACCGACACCAAGCAGCTCCAGGC 17605 29 100.0 32 ............................. AGCACCGCCGTATCGAACTGGAACGCCTGGAC 17666 29 100.0 32 ............................. GCTAAAAAATGAACGTCATCTCTAGCGTCGGA 17727 29 96.6 32 ............................C ATCCAGATGGTGCGCGTGCCGTGGTCGGTCAG 17788 29 96.6 32 ............................C AAACCGCCCCCCTCAAGCTCAGCAACTACACT 17849 29 100.0 32 ............................. GCCGGGGGCAGGAGAGAAAAGGAGGCCGAGAT 17910 29 96.6 33 ............................A GTCGGCTGCTGGGCCGGCACCCTCGCCGACCTG 17972 29 96.6 32 ............................C GAGCGCCGACCCGAGATGGGAAACCCGCGAGG 18033 29 96.6 32 ............................C CGCGAGCGGGGTAGCGAGCATGGTTGCATCAG 18094 29 96.6 32 ............................T GGGAGGCTCCCGAGACTGGCGCCCAGTCGATC 18155 29 100.0 32 ............................. CAGCGGGGCATCACGGAGTCCGCCCTTAGTGA 18216 29 96.6 32 ............................T GTCGAGCGGGCCCCGACTGCCTCGCTCATGTG 18277 29 96.6 32 ............................C TCCGGCACTAAAATTTCTTGGGCTGGCAAGAA 18338 29 100.0 32 ............................. GCTCAGGACCCTAACCGCCCCCTCGGAGGTGC 18399 29 96.6 32 ............................C CATTCCCACCGTTAAAGCTGCGACTATTGAGC 18460 29 100.0 32 ............................. CCGCTGCTGGTGGTGCCGCTGATTCTCGGATC 18521 29 96.6 32 ............................C AAATGAGTCCTCGCTTCGTCACTAGCCCCGCC 18582 29 96.6 32 ............................C CTGGCCCACGCCAACCTGTCGGACACCAACCT 18643 29 96.6 32 ............................C ACGGTGTCAAGGGCTCCGATGGACTGCTCCAG 18704 29 100.0 32 ............................. TCCACACTGCTCCGAGCCGTCAACATCGACCG 18765 29 96.6 32 ............................C ATGATCTTGGCGTCAATCTCGACGGTGCGGTC 18826 29 100.0 32 ............................. CCCTCATCCACGCCGTAAACATGGGCCTAGCC 18887 29 96.6 32 ............................T TGGTCGTCGGGCGGCATCGTGTCGACATACGA 18948 29 100.0 32 ............................. AGTGACCCAGACGCTCGAATTCGATATCGCAC 19009 29 100.0 32 ............................. ACGCCACCCATTTCGCCCATGTCAACTTGGGC 19070 29 100.0 32 ............................. AGCCAATCACAGCGGTGATCCAGGACATGGAC 19131 29 100.0 32 ............................. CCTTCTCGGCCTGACGAAGGGCCTTCTTGGTC 19192 29 96.6 32 ...........A................. AGCCGACGGCGGGGGTGCCTGCAAGCGAGTCA 19253 29 100.0 32 ............................. CTGGCGGCGACGGCCGGGACTATTCTTGAGCG 19314 29 96.6 32 ............................C CCGCTTGTGGTGGTACCGCTGATTCGCGGGTC 19375 29 96.6 32 ............................T GCGACTCGGGTCGCGGCGGCTTTCCCGAGTGC 19436 29 96.6 32 ............................A ATATCCGTCCCCGCTCCGCCTCGACGGCGACA 19497 29 100.0 32 ............................. TCCTCGCCGCGGCCACCCTGTCTATCTCCTAC 19558 29 96.6 32 ............................T TTCTGGAGCAGCGCGGGCGAGACGGGCTAATC 19619 29 96.6 32 ............................T GTGGCTTGGCGGCCTTTATGGCCGACACGGCC 19680 29 96.6 32 ............................C GGGCGCCGATCTGATGGACGCCGACCTGCGCG 19741 29 100.0 32 ............................. ATCATGTTCTGCGGTAAGGATGTTGCTGAAGC 19802 29 100.0 33 ............................. GCCGCCGTCGAAGAGCACCGCCGTATCGAACTG 19864 29 100.0 32 ............................. ACCCGCGTCACGTCCGCCAACCACGTCCGCAA 19925 29 96.6 32 ............................C TGGGAGAGGGATCTTGGTCCCTCCCTACTTGT 19986 29 96.6 32 ............................C TCTTCGAGCTGCTCCCAGGCCGCACCGAAGCA 20047 29 96.6 32 ............................C ACTTCGTCTTCTTCCGAAGTCCAAGTATTCTT 20108 29 100.0 32 ............................. ATGAACTCGTGCGGGTAGTCGGCTTCATCGTC 20169 29 96.6 32 ............................C CACGAGAAGGTCGACCCGATCGCAGCAAGGGC 20230 29 96.6 32 ............................T CCGCCGACCTGATCGGCGACACAGAGCGAGCG 20291 29 96.6 32 ............................T ATCTTCCTATGGAAGATAGTCCGTACCTGACT 20352 29 100.0 32 ............................. GCGCGCGCCGGGATCGCCTGGCTGGTTTTCGG 20413 29 100.0 32 ............................. TCTGCCGAGCACGCCACGGGGCGTGCGCTTGA 20474 29 96.6 32 ............................C TGTCCTCGCCATCCAACAGCAGATCAGAGACC 20535 29 96.6 33 ............................C TCAGCAACTCCAAATCGAGAAGGGAGACTGACA 20597 29 96.6 32 ............................C GAGTTGCCACTTCTCCGCGAAATCGGCAGTCT 20658 29 96.6 32 ............................T ATCGATATCCGATCACCCTCGCCGCGCCACTC 20719 29 100.0 32 ............................. TGACCGACACGATCCGCGTCGGCACCGGCGCG 20780 29 100.0 32 ............................. AAACCGGCCCCCACTAGGCAAAACGCCTGGCG 20841 29 96.6 32 ............................A GGCGGTGAGTAGTGAGCGACACGGAGCACTGG 20902 29 96.6 32 ............................C GTGACGTGCGCATGCACCCTGCTGGCGGCCCT 20963 29 100.0 32 ............................. CTCCAGGCTGCCGAGGCCTTCGCCATCGCCGA 21024 29 100.0 32 ............................. TCTTTGGTCACCCTCTCGAAAGACGGCGAGCA 21085 29 96.6 32 ............................C TGGGAGCGCGTTTCCTCGGCGGGGGAGGCAGC 21146 29 100.0 32 ............................. TACAAATTCAACCCGAACTCCGACGCTGGCGT 21207 29 96.6 32 ............................C AGCGCGTAGAGCCCGTTCACCACCACAGGGGT 21268 29 100.0 32 ............................. CTCTCACCCATGTCCGAGCTCGTGCAGCCTGC 21329 29 96.6 32 ............................T GTCCGCGAGCTCCATCACTCATCTCCCGAGCG 21390 29 100.0 32 ............................. AGCGCGGCAAGCGGTCAGCAGTCGTCGTTGAC 21451 29 100.0 32 ............................. TTTTACTCATAAGAGCAAAAGAGGCCCGGCAG 21512 29 100.0 32 ............................. TGGGCTGGGATAGGCTGGGATGAGCTCTCATT 21573 29 100.0 32 ............................. GACCTGACCATGACCATCATCGACAGCTTCGA 21634 29 96.6 32 ............................C TGCGCCTCGGCGTGTACTCCGCGGATCTGCCC 21695 29 100.0 32 ............................. TCGGTCTTGGTCAGCGGGGTGAGCTCGGCTGA 21756 29 96.6 32 ............................C TGCATCTGTCCCGACAGGCATACCTGCCAACG 21817 29 100.0 32 ............................. GTCACGATCCAGCTCCTTGACGGTACAGAAAC 21878 29 100.0 32 ............................. CACCAGCCGCCTCCGGGGCCTGCTGCAAGCCG 21939 29 96.6 32 ............................C ACTGGCCTGAGCAACGCGCGCGACACCATCAA 22000 29 96.6 34 ............................A ACCTGTACCGCGCCAACCTGCACCGCGCTACCCT 22063 29 96.6 32 ............................A GGTCGTGGCGGTGGGTCACGGTCGGTTCTCCT 22124 29 100.0 32 ............................. GCCGCCGATCTGGCGGCTGGGGGGTTCAGTAA 22185 29 96.6 32 ............................T TGGGATAAGGGTTGGGGCCGTTAGGTCGTCTA 22246 29 100.0 33 ............................. TGCTGGTGGTGGAGGTTCCGCAGGGCGTTGGCG 22308 29 96.6 32 ............................C GCCCCGCCCCCATCCTTGTTTCCCGCCTGACC 22369 29 96.6 32 ............................C GCTAACGTCGATGTCGGCCGCTTCAAGGTCGG 22430 29 96.6 32 ............................T GTGCCCGCCGAGTACGCCAGGCATATTGAGAA 22491 29 96.6 32 ............................T CCATACCCCCATTGGGGTGGCGTAGGCGCCCC 22552 29 96.6 32 ............................C GTCGTCGAGATCCACCAGGAGAAGGTGGAGGT 22613 29 96.6 32 ............................T CTCGACCGGCGGACCGTCGTCGCGCGCCACCA 22674 29 100.0 33 ............................. CAGACCCTCTTGCTGTGGTCGCTTCGGACTGGA 22736 29 96.6 32 ............................C GCTACCCTGCGCGGCGCCAACCTGTCGGACGC 22797 29 100.0 32 ............................. TCGCAAGTGTTGCCGTCCGTCCGCTACCCAGA 22858 29 96.6 32 ............................T TGATCACAACAGAAGATGAGCCTGCCGACTCG 22919 29 96.6 32 ............................C AGTCGAGAAGATCCGAGTTTATGGGGATCAGC 22980 29 96.6 32 ............................A CCGAAATCAACACCGCCTGGCCGCGCCGATCG 23041 29 100.0 32 ............................. GCGTTAGCGAGGCCCCGTCTCAGCTGCCGGTT 23102 29 96.6 32 ............................T CTCTGACACTTCGTCGCGGCCACTCCTGACCA 23163 29 96.6 32 ............................T TTCTAGGAACTCCTCAGCGTCAATCTCGGGCA 23224 29 96.6 32 ............................C ATGGGACAGACGGCCCCGGGACATGGGACACA 23285 29 96.6 32 ............................C GCCACTTGATCATCAAGTCGGGCTCGGTTGCC 23346 29 100.0 32 ............................. GCTCGACATGGTGCCGCAGGCGCTCAGCCAGC 23407 29 100.0 32 ............................. CCCTCCTCCGTACCCCGGAGCTAGGGGGGTCC 23468 29 96.6 32 ............................C GTCGCCCGGCACATATGCGGCCTCAGCCGAAA 23529 29 96.6 32 ............................C CCCACTCGCCCCAACTGGCGGCGCCCAGCCGA 23590 29 100.0 32 ............................. GGCGCTTTCTCGTTCAGGGCCGGGATGGCGGG 23651 29 96.6 32 ............................C TTCCCGCCGGGGGTCTCCGTGATGAACTTCGA 23712 29 96.6 32 ............................T GTCACGCGCCGGGATGCCCGCGTCGAGGGCGA 23773 29 96.6 32 ............................C TCGGCATCGGCCCCGTCGTCGAGGACGTCGTG 23834 29 96.6 32 ............................C AGCACGCCGGTCGATTTCTCGGTCTCTTCGAA 23895 29 100.0 32 ............................. GACGGACTTCTCTCCGATTTGGACGCAGGTCT 23956 29 96.6 32 ............................T CTTGAGTTGGCTCCGCATCGGTGGAAGAGAGT 24017 29 96.6 32 ............................C GACTTGCGGCGCGGAGCAAATCCAAATCTAGC 24078 29 96.6 32 ............................C TACCTCGGCGTTACGCGCCAGACGGTCGGCAC 24139 29 96.6 32 ............................T TGGGGCCCGGCTTCCTCAAGTTTGGGGAGACC 24200 29 96.6 32 ............................T CACCGGCGCAATCTGGGTGGGCCCCCCGATGG 24261 29 96.6 32 ............................T TTGTGTAGTCGCTACCGACGAATGACCGAGCA 24322 29 96.6 32 ............................T CACGCGCCGGGTGAGCTGGACCCACCCCGTGG 24383 29 100.0 32 ............................. CATTGGCATGTCGCGGCACGAAAGGCTGGGAT 24444 29 100.0 45 ............................. CGGGGATGATCCGCTCGCGGTAGATCCCCGTCGGAGAGGGGGTGG 24518 29 100.0 32 ............................. TGACTCGCCCCCGACGGGGCATCAACTGACCC 24579 29 96.6 32 ............................T CCGAGGCCTTCCTGCAGGGCAGGCAGGTTGTC 24640 29 96.6 32 ............................T ACCGGGCTGGCCTCTCTGGTGGCCAGCCTGTC 24701 29 96.6 32 ............................C GCCGCCCTCGGCGGGCGTCGGGTGTCCTTGAT 24762 29 96.6 32 ............................T ACCGACTCAGTCCGCAGGGCCGACGCATGTAC 24823 29 96.6 32 ............................A TACAGAACCATCCGCGACGGAGACGACCGCAT 24884 29 96.6 32 .......................A..... CACGTCGCACCCTACGCCAACATCAACCGTGG 24945 29 100.0 32 ............................. CATGCGGTAGATCCCCGCCGGAGAGGGGGTGG 25006 29 100.0 32 ............................. GCTATCAGCGGGAACCGCACAACCAAGGCCGT 25067 29 100.0 32 ............................. AAGCAGCCCGGTGCCCACACGGCGCTGAACGC 25128 29 96.6 32 ............................C TTGGTCGCCCCGTCCGCCGAAGCGGCAGAAGC 25189 29 93.1 31 ...........................GA TCGCTGGGAAAGCTACGCATGCCTGACCGGA A [25213] 25250 29 96.6 32 ............................A TTTTCCGTTCGATGGTGGTTAGGCGGTCGTGG 25311 29 100.0 32 ............................. ACTATTCCGAGTGGCTGGGCAGCTCCGATGGC 25372 29 100.0 32 ............................. CAGCCTCTGTGACGATAGAGACCTGCCCGGAC 25433 29 100.0 32 ............................. ATTTGCAGCCACGCGCGAGGCGCGAGGGTGTC 25494 29 96.6 32 ............................C CTGACGGACGCCGACCTGCCCCGCGCCAACCT 25555 29 96.6 32 ............................C GCGTACTTCGTCCCGACGTGGCAGGGGTGGCG 25616 29 100.0 32 ............................. AGCTAGCCCGATCCGTGGGCTCCATCCGCGAC 25677 29 96.6 32 ............................C TATTCGTGCCGCTGAGTAGGCGGGCCAAGGAA 25738 29 96.6 32 ............................T AGGCTCTTGGCGGAGCTATTGCTTACGCGGTC 25799 29 96.6 32 ............................T GTGACCATACACGCCCCGACCCCAGGGCAGGT 25860 29 100.0 32 ............................. CCCATCGTCAATGCCTGGCGCTGCGCCAACCC 25921 29 96.6 32 ............................T CTCGTGCTGTGCCACGGATCACACCTCCCAAC 25982 29 100.0 32 ............................. CGCCTTGGCGGCGGCTTTTGCGCCAGCCACGA 26043 29 100.0 32 ............................. GCCATCGCAGCGGAGATCAGAGCCGCTGTAGC 26104 29 100.0 32 ............................. CCGCCCGGACGGCTTGGCGAGCAGGCCGGTCA 26165 29 100.0 32 ............................. GGAATCCCCACGGCGTGGCGTGCCAGCGTGGA 26226 29 100.0 32 ............................. CCGCGAAGGGGCTGATCCACCCCGACCACCTG 26287 29 96.6 32 ............................A CACTGCTCACCGTTTCCGCGATCGGCCTGTCG 26348 29 96.6 32 ............................A CGCCCTGGCCGGTCGCAGCAGTCAACAACGAC 26409 29 100.0 32 ............................. CCACCCCTGTGCTGCCCATCGAGTCCCCGGAC 26470 29 96.6 32 ............................T TTCCGCATTTTCTGGCAGCCCTTCCGCAAGCT 26531 29 96.6 32 ............................C AGCTCGGCGTGACGAAGCTGCTCGGCTGCGAC 26592 29 96.6 32 ............................C CACCTGCCCCAGGTCCTCGCGCCAGGTGGCGA 26653 29 100.0 32 ............................. CTGATGGGTGCCCCATTTCGCCACCCCGAGGG 26714 29 100.0 32 ............................. CTGCTCAAACGGAAAGGGAAACAGCGGCAGCC 26775 29 96.6 32 ............................T GATCTATCCGCCAAGGTGCAAAAGGCGTCCCC 26836 29 100.0 33 ............................. CCAGGGGGCAAGGATGGTCCGCGCCGATGCCAT 26898 29 100.0 33 ............................. CCGGAAGCGGCGCCTCCCCGGCACGCCTTAGGG 26960 29 100.0 32 ............................. CCCTTGCGATCCATCAGCGCGCAACTGCCGAC 27021 29 96.6 32 ............................T GTGCGGCCTGCCACGCGGACTCCGACGAGGAC 27082 29 96.6 32 ............................C TCGTAGGTGCCGCGCCCTTGCCGGTAGTCCTG 27143 29 96.6 33 ............................C GGTCACGTATGACCAGTTGGCGGCGCCGGTGCG 27205 29 96.6 32 ............................C AGAGACTCGGCTTCGGTGATGTAGTCGCGGGT 27266 29 100.0 32 ............................. AACTCCCGCAGGCTGGACCCCAATGGGATGCG 27327 29 100.0 87 ............................. TCGGCCTCGGGCAGCAGCAGGCCGGAGAAGCCGTGCTCCCCACGCGGATGATCCGTCGGCCTCGGGCAGCAGCAGGCCGGAGAAGCC 27443 29 100.0 32 ............................. ATCACCGCCTCCGTTGCCAAGCAAACCGCCGA 27504 29 100.0 32 ............................. TTATTAACATGATGGGAGAGTGAAAGTGGAAG 27565 29 100.0 32 ............................. CGGTAGCCGCCGAGGCGATGCAACAACAACCG 27626 29 100.0 32 ............................. TTGTTGACGACTGGGATGTTCTTGGGGGGCAG 27687 29 96.6 32 ............................T GGGACTCAGGATGGACCGTCGCAGCCCGCGTC 27748 29 89.7 0 ...........A............C...A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 214 29 97.9 32 GTGCTCCCCACGCGAGTGGGGATGATCCG # Left flank : CTACCTCTGGGATGAGGAAGTCGGGGCCGTTTCCGGCGGGGTCGACTACACCGAGGTCGACTTCTAATGATCACTCTCGTACTGAGCAAAGTTCCTCGCGGGTTACGCGGACACCTGACCAAGTGGCTCATGGAGGCGGCCCCAAACGTTTTCGTCGGATCGCTCCCTGCACGGGTTCGGGACGAGCTCTGGGACATAGTTCAGGACGGCTTGGAGGGAGGAACCGCGCTTCTGGTCTACAGCGCACGAAACGAGCAAGGCTTCGCAGTGCGTAACGCTGGACACGCCTGGCAACCCATCGACCTCGATGGGCTAGTCGTCCTCCGCAGACCAGCCGCCAACGACACCAGCCGCCCGGAAGAGAGACTGCCCATGCCGAGAGCCGCGAGACTCGGCTGGCTCCACGCGCAGAGCCTCAAACGAAACCCAAAACACGAAACCCGCGAAACAAACTGAACGAAGACGCCAAGATGCGCTAGCATCATGGCTAGTCAATAACT # Right flank : AGAGTCCGATAGACTGGCGAGATGAAGGCTCTCACAGTGCGCTATCCTTGGGCACAATTTATCGCCGCTGGAGCGAAAACTGTCGAAAACCGCAATTGGCGCCCCGCATCTCTGCCTGCTCAGATAGCCATCCACGCTGGGGTTGGGGCAGATCCCGTCCCGGGGGATATGGCTGCGCCGCCAAAGGATCGGCTAGGACAGGCGGTTGCCCTGGTAACCGTGGCCAGCTGCCATGCCCCCGGGACGGAATGTGGCGCGGCCTGCGCGGTTTGGGGCGATCCCGATTCTCGGTGGCACTGGGTACTGAGCGACATGAAGGAATTGCCCCCGGGTCCGAAGCTCCGCGGGCAGCTTGGCCTGTGGGATCTGTCGCTGCACGATATAACGGTCGCCCCGATGGTGGGCGCTCCCCACGCAAGTGAGGATGATCCGTCGATAGGATAGAAGGGGAACTGATCCTCAACCGTGCTCCCCACGCGAGTGGGGATGGTTCGGCGATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCGAGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //