Array 1 124544-125725 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWP01000027.1 Klebsiella pneumoniae strain MH15-274M contig_17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124544 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 124605 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 124666 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 124727 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 124788 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 124849 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 124910 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [124964] 124964 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 125025 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 125086 29 93.1 32 ............CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 125147 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 125208 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 125269 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [125280] 125331 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [125336] 125393 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [125398] 125455 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 125516 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 125576 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 125637 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 125698 28 79.3 0 ..........A.CA..T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 93.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70347-72996 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHWP01000037.1 Klebsiella pneumoniae strain MH15-274M contig_23_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70347 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 70408 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 70469 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 70530 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 70592 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 70653 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 70714 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 70775 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 70836 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 70897 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 70958 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 71019 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 71080 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 71141 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 71202 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 71263 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 71324 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 71385 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 71446 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 71507 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 71568 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 71629 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 71690 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 71751 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 71812 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 71873 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 71934 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 71995 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 72056 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 72117 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 72178 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 72239 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 72300 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 72361 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 72422 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 72483 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 72544 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 72605 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 72666 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 72727 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 72788 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 72849 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 72910 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 72968 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //