Array 1 28344-30685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPR010000018.1 Paenibacillus sp. MSJ-34 M-34_ctg0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 28344 32 96.9 35 ...........T.................... AAGGGAGGGCTAAACATGACTGAATGTGGATGCGG 28411 32 96.9 35 ...........T.................... ATGCCGACTATTCCATCTTTGGACATATCATTGCC 28478 32 96.9 34 ...........T.................... ATCATTGTTACTTTTCCAATAGTTCGCAATATTT 28544 32 96.9 32 ...........T.................... AATTCCTTATCCTTGACTTAATATTACCACAG 28608 32 96.9 32 ...........T.................... AATTCCTTATCCTTGACTTAATATTACCACAG 28672 32 96.9 34 ...........T.................... CTCGCGGAAAAACTTCGTAGGCTCCGATAGGGTC 28738 32 100.0 34 ................................ TGTGCCAGCTCCATCACCCCCTTTCGCTTTATAT 28804 32 100.0 37 ................................ GTTTGGAACTTTGATGAAGTGAAGCATTTTTTGTCCG 28873 32 100.0 36 ................................ TTCGCCGTCGCGCACAATTGCTTTGGTGCGCTTGCG 28941 32 100.0 32 ................................ TTTTTCTCCGATTTCAATTCCGTTTTGTCTAA 29005 32 100.0 33 ................................ AGTTTAAAGGCGCAAAACCTCCTGAAGCAGGTG 29070 32 100.0 33 ................................ GGAGGCTCTTAGAAGCTTCTTGTACGATCCCCC 29135 32 100.0 34 ................................ AATCATATGGCGCTTTGCTGGAAGAGAAAAAGCG 29201 32 100.0 35 ................................ GCGCGTACATAGATGAGCGAATGGCTGAACATTCA 29268 32 100.0 33 ................................ TTTACCAAATGATGCAAAGCCCGAATGGCTAAC 29333 32 100.0 32 ................................ AGAAACACTAAAAGATGAAATAGAAGGAACGA 29397 32 100.0 35 ................................ AATGTTGCGAATGTCTTGCGGTAGGATTATAATAA 29464 32 100.0 33 ................................ ATGATGATCCCTCCAATAAGCTAGGATTGTCCC 29529 32 100.0 33 ................................ GGGTTGTAATCGTTGGCTTGCACCTCATGTGAG 29594 32 100.0 35 ................................ ACCGCCGTTTCTCTGCGCCGGTCGCGCCCGATCAT 29661 32 100.0 33 ................................ GCTGAACTTCCGCCGCGGAAAAAGGCTGCTCTT 29726 32 100.0 34 ................................ CCCGGACAAGCTTGAAAGGAGGGATACGGTGACC 29792 32 100.0 33 ................................ ATTCGTGGTGACAGCTACGATAAAACAACCCAA 29857 32 100.0 33 ................................ GAGGACGTCAAAACACTTGGCGAGCCGCTGAAA 29922 32 100.0 36 ................................ GAAGTCTACCAAGTGAGGTGCAGGACAGATGAAAGA 29990 32 100.0 35 ................................ TTTGCCTTCCCAATCCTTACATTTTGCATTTCCGT 30057 32 100.0 34 ................................ CCTTTCGGGGTCCACGACGATAAGTCGATCCACG 30123 32 100.0 35 ................................ GATTATTATTGCGAATTATCGAAAAAAAATAAGTC 30190 32 100.0 33 ................................ TACGAGCACGCCTTCATGGAGTGCCTTAATAAT 30255 32 100.0 35 ................................ ATCGAATACGGATTCCGAGCTCACTGGGTACCGGG 30322 32 100.0 36 ................................ AATTAAGTCCCAATGCTCTGTATCCTTCACCCTTAC 30390 32 100.0 34 ................................ CTTCCGCCCCGTCGTAGTACAACGCAATATGTCC 30456 32 100.0 35 ................................ GCCACTTGCGGTAGTGCCGTGCGTGGGCGTATATC 30523 32 100.0 33 ................................ GACCACCTCGCGAATAACCTCCGATCCGTATTG 30588 32 100.0 34 ................................ CCAACTCAAAATACTTGGCAACCGTATCGTTGAC 30654 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.5 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : CCTGCGATCGTACAGGAATTTCCGTACCAAACCACCTCATCCACCATCGAAGCGAGAAAAAAGATCTGTTATCGCAGGCTTTGCTGCAGCAACCGATCAAAACGAGTAGAAGGGATGCACAATTGCAGGCTTTCTAAGGTGTCCATCATGCCGCTTATCCTTTCGAACTGGCGCAGTGTTGTTTGATTCATTCCAAATGAAGTCCTTGCAATATGTCACTGTTTGTTCTAGTGCAAACATGCAAGCTATCCTTGATAGGATTGGAGCGAAAGACTATACTTTAGATATGTGGAAGGTTTTGGAATCCTTTTATAAGGCGAGAAAATGATTCGGTGCGAACCTCAAGCTCACATAAAATCCCCGGGAGATTCGCACCTCGCTTCCGGCCTGCATTTGTTGCATTTTAAGTTGATTTTTTATGGAAGAAAAAGGGGAATAAAAATTGATTCGCACTTTTGGGCCCCGCAGGCCTTGTCCGGCAAGGCTTGAAATAGGTCGGA # Right flank : TAACCTTTTTGAGTACTACAAATGGCCCTTAATTCCCATCTAATTTGCTGAAAAACCATGTGGGACGCGGGGGGCGGACCTGCCAGGGATTTTATGTTCGCTTGGGGTTCGCACCACGATTTAAAAATATGTACACCTATAATTTTTAGTAGTCTCTGCTTATCCAAATACAACATCAAGTTGACCGCAACCAAATGTAACGTTTCGGCCGATATGCAATATGCGTGAGGCATGTAACCACGGAACAAAGTGTGACATATCTCCTTCAAACGTCATAGCCCCTAATAAGCCGCTTAAATCCATTTTTACATTTCGTCTATTGGAATACCGGCTCATCTCGCTCCAATATAAACCGGAAGAAGTGGTGTGAACCGAGGCGGACAATTGGGATACAGACGATATCGCATCAGGAGATACGTGCCCGCCGTAACGCTCCGTTAGCGCGGTCACCCTTCTTGTGATGCTGCGAATGATCGTCGGAAAATCGATTTCCCTCAACT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 2 37842-40184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPR010000018.1 Paenibacillus sp. MSJ-34 M-34_ctg0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 37842 32 100.0 34 ................................ CATCTTCCATCCATACATTACCTATCCCAAACGT 37908 32 100.0 35 ................................ TTTCTATTTAAGATTAAAAAGGAAGAGGCGCAGGC 37975 32 100.0 35 ................................ TTTCAATGTGTCGTGAATTATTTGCCAAGCCCTGA 38042 32 100.0 32 ................................ ACGTCCTTTACCCACGGATGTTGGGCGACGAG 38106 32 100.0 34 ................................ TTTATGCCGGGCAACGGCATCGCAGTAAGCAGCC 38172 32 100.0 33 ................................ ACCTTCGCTTGCTCTAACTTCCAGCTTTACCGG 38237 32 100.0 34 ................................ CGCTAAACGAACCGTCTACGCCGACGAGCGTCCC 38303 32 100.0 33 ................................ GATTCGATGGCCCTAAAGACGGTGTTAATCGCC 38368 32 100.0 36 ................................ CCCGGAGTGTTGCGATTGTTGAGCAAGTGGAATATT 38436 32 100.0 36 ................................ CGCTCAAGATCCTGCCAGCCGATCAGCTCGACTCGC 38504 32 100.0 35 ................................ TCCCCTATAGGAGAGTGAAAGAAATGATCGATATC 38571 32 100.0 33 ................................ AAAGCTGCCGAAGCGCGAGCAGCGCTGGAAGCG 38636 32 100.0 34 ................................ ATGCACCATGCCTCCTTGCCGATTTGTAGGGTGG 38702 32 100.0 34 ................................ TTTTCCCTCCTTCTCTGGGTAAAGGGATTTTAAA 38768 32 100.0 38 ................................ CATATACTGCTGAACACATTTCGAATGCTCTCTGAGAG 38838 32 100.0 33 ................................ CATGCTTTTTCCCAATCTCCGGCGAATACGCCG 38903 32 100.0 33 ................................ GAACTTCTCTCGGAAATTCCGCTTTGCTTTATC 38968 32 100.0 34 ................................ TATTCGGCTAAGAAGATCACAGCAGTCGAGAAAG 39034 32 100.0 34 ................................ CGGCGACCCAGCGAAGATTCGCGAATGGCTAACC 39100 32 100.0 35 ................................ AACACCCCAAGCATCCTCACATGCTGGCAAACATC 39167 32 100.0 33 ................................ CGAATAAGGTCGTCGTCTCGCTCAATGACTCTC 39232 32 100.0 33 ................................ CTAACCGTCGATGGCCGCTATATCCCCGGTTAT 39297 32 100.0 33 ................................ ATCGGCAACGCCAGAGATAACCGGCAAACTGGC 39362 32 100.0 35 ................................ AATTTTCATGGTATTTTCAAAAGTAAGAGTTTTAT 39429 32 100.0 36 ................................ AGCGGATTTTTTAATTGTCCCGGAACGGTTGAGTAC 39497 32 100.0 33 ................................ GAGGGAGAGTGAAGCGGAATGAGTGAGCTTGTC 39562 32 100.0 34 ................................ TCCGAAGAAACGGGAATGAAGGTACAACGTCGTA 39628 32 100.0 32 ................................ TGCGGCTCTGTAGTTGTCTTGATTTTGGGTAC 39692 32 100.0 36 ................................ TCGCTCACGTCAGAAGTTTCCCGACTCCGATCAGGC 39760 32 100.0 33 ................................ AAATCCCCAACGCTTATAGATTTCGACCGATAG 39825 32 100.0 35 ................................ TCTAGCAGCACACCACCAAAGCAGCCGCCACGTTT 39892 32 100.0 33 ................................ CGCTAAAATAGTATCAGTCAACCGGTTTACTCA 39957 32 100.0 34 ................................ AAATTAAAATACGAAATATGTCGAGAAGCATTGG 40023 32 100.0 33 ................................ GTTACGTCGATCAATCGATCGGCATCGTCCAAG 40088 32 100.0 33 ................................ CGACAACGAGAAGACGGAAAAACAGTGATTGAC 40153 32 93.8 0 ...A........................G... | ========== ====== ====== ====== ================================ ====================================== ================== 36 32 99.8 34 GTCGCTCCTTACGCAGGAGCGTGGATTGAAAT # Left flank : CATCACGAAACCTGCGCCAACAGGTTGATAGAGATTTACCGCCGATACGATTTCAATCCACCCATTCACATGGAGTACGACAATTTGCAAATGCATACCGGATTTATGTGCAAATTCACAGCAGGGATTTCTGAAATGTCCATTATGCCGCTTATCTTCCCGCTGGCACAGTGTTGTCTGATTCATTCTTAACCAATTGAGTTCCTCGCAATCCGTCACGGTCAGTTCTAGTGCAAACATGCAAGCTTTCCTTGATAGGATTAAAGCAAAAGACTATACTTTAGATATGTGGAAGGTTATGGTAGCATTTGCGAAGCGAGAAAAATAATGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGGGATTCGCACTTCGCTTCCGGCCTGCATTTGTTGCATTTTAAGTTGGTTTTTCATGGAAGGAAAAGGGAAGTGGAAATTGATTCGCACTTTTGGGCCCCGCAGACCTTGTCCTGTAAGGCTCGAAATAGGTCGGA # Right flank : TGATCCCACATCACATCAAAAAAAGCTTGGATAAACTTAACGTTCTCTTTGGGGTGGAGTATAACCTGTGAGCAACCATCAACTATTGCTGGAATGAAAGCGGCTATTCCCGTATCAATGTTTCAATGTACAAGAATAAATATCGCAGCGGCGCCGGTCATGGAGTCTAATTTGATGCTAGACTTAATAGTGGACACGGAGAACCGAGAATGAGATAGAATAAAAATATCTTAATTTGAGGTGTCCGACATGACAAAAAAGTACGACAAGGAATTCAAAATGCAAACTGTTCGACTCATCCAAGAAGAAGGTAAGACGGTGGCGCAAGTAGCCCGCGAAATGGGCTTGCATGAAAATACGATCTACCGCTGGATTGCAGAGTGTAAACAAGACGGGAGCCAAGCCTTCCCCGGCAGTGGACAACTGAAGCCGGAGGATAAGGCCATGCGTGACCTCCAGAAACGAATCCGCGACCTAGAAGAGGAGAACGATATCCTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 14348-12790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPR010000053.1 Paenibacillus sp. MSJ-34 M-34_ctg0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 14347 33 97.0 32 ................................T GTTGTATCCCGTCTCCACGCGTCTCCGCCCTC 14282 33 100.0 33 ................................. ATCGGCGGATGGGACTTTCAATGGCGCGTTATC 14216 33 97.0 31 ................................A AAAGGGCGATGATCGCATAAAGGAGGGCTTT 14152 33 97.0 32 ................................T TATCAAGCAGCGAACGAAGCCGCGGTATTTGA 14087 33 97.0 32 ................................A ACTTCTAAATAAAGATTTATCATGGTTTAAAC 14022 33 97.0 33 ................................A AGACAAATACATAAAGGAAAAAGATGAGAATAA 13956 33 97.0 34 ................................C TAACCGTCGATGGCCGCTATATCCCCGGTTATGC 13889 33 97.0 34 ................................A AGGCCGGTTAAAGAGAGCACACCGGAACAGTTGC 13822 33 97.0 33 ................................C AGCCGTCTGCAAATATAGTAGGCTCGGCTGCTG 13756 33 97.0 33 ................................C AGCCGTCTGCAAATATAGTAGGCTCGGCTGCTG 13690 33 97.0 35 ................................C AGAGGAAAGCTGGAATGAAGTGTTTGATGTCATAA 13622 33 97.0 34 ................................C GGTACCGCGACGAGAAGTCGAGGCACGTTCGCGC 13555 33 100.0 32 ................................. ATATCTGACATGATTACCGAGATGGAAGGAAA 13490 33 100.0 35 ................................. CTCTCGGTTGTCGCTAGGTTATTTCCTAAATCAAC 13422 33 100.0 32 ................................. GGATAAAGCTGCTTTATAAAATCCGTATCCTG 13357 33 100.0 32 ................................. CCAATCCTACATCCGCCCCAAATCCGCTCGTA 13292 33 100.0 34 ................................. ATGATGTTCCCGGCCACTCCGAATATATCCTTAC 13225 33 97.0 35 ................................C TTTACCGCCAAACCATATAAGCGGGCTTCGTATTG 13157 33 97.0 33 ................................A GCAATGCGATTTACTACAGTACGGTGTTCGGAT 13091 33 100.0 34 ................................. TCACGTAACCGCCTACCATCGGATCGGGATAGTA 13024 33 97.0 36 ................................A TTTCGTCAAGTGAGATACTCGGTAGCTTCCTGTACC 12955 33 97.0 34 ................................T TTAGTGTTTGGGAGCATGCGAAGCTGAACATTCG 12888 33 97.0 33 ................................T TCCACCCGATAAGTGGAATAATTATCGAATCCA 12822 33 97.0 0 ...............................C. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 97.9 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATG # Left flank : TGACGAGTACCCTCCATTTCTGTGGAAGTAGGTGTAATCTGTGCTCATATTAATTACCTATGATGTAAGCACGATGAATAGCGAAGGTCAGAGGAGGTTGCGCAAAGTATCGAAAATATGCCAGGATTACGGCCAGCGCGTCCAAAATTCGGTATTTGAATGCGTTGTAGATGCAACCCAATTCGCTGTTCTGAAGATGAAACTGATGGATGTTATCGATGTGGATCGGGATAGTCTGCGATTCTATCAACTCGGGAACAACTATAAGAACAAGGTCGAACATATTGGTATCAAAGAATCGATCGATATCGAAGGCCCCTTAATCTTGTAGTGCGAATGTGAAGCGAACATGAATTACTAGGGAGATTCGCACCGGAATTTTTACTTATATTATTGTAATATCCAAAAATAACCTGTAATTAAAAGGAAAATTTGTGGACTCGAGTGTGTTTTTTAATGAGTAACAACGATTTTTCAAGTCGTTTTGATTGAAAATCGGA # Right flank : AAGGCGAAGTAAGAAGCGGCCGTTTGCGGCGCAAGCTTGATCAAATCCGGAATTCGCTTTAGATCTGACGGATGGTAATAAGAACGGTTGATAGACATGCTTGATTCCCTCCCATATCGTTTAAGATATCTGCATTGTAAGGGAAGCGAGCGGGAAATTCCGTGACAAAGTCACCGAAGAACCATTAGCGTTGCTTTGAATTTTGCTAGCTGGGATGGTGTCGATAAATATAACGGATTTCGGAGGTCTTATTTTTCAAATTTTAGTCGATTTTTCGGAATTAGCGGATTTTCGAACCGTTAACATGCCGCGGTCAGCCCGGAAATAGTTTGTTTTGTGAAGTTGCGACGAAATAGGGCCCTCAAAATCCGTTAACTCTGCCCAAACAGCGTTTTGGGGCAAAGTAAGGCCTTCATAATCCGTTAACCTATCGTCCCTTTGCTGCCATTGGCTTGAAACACGATAACATTCGATGCAACGCTAGTCACCGAAGAAGACAG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24790-22617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPR010000053.1 Paenibacillus sp. MSJ-34 M-34_ctg0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 24789 33 97.0 35 ................................A AGCATGGAAAGAGGAAGCAGAACGCCAAAAAGAAC 24721 33 97.0 33 ................................T TCATCGCACATCATCTCCTCGGAGGCAGTTTCA 24655 33 97.0 36 ................................C CGGAGTACAGAGTTTTCGATGGTTGTGACTTCATCC 24586 33 97.0 35 ................................A GGTATATAGGCAGTATCCAAAAGGAGTGGTACTTG 24518 33 97.0 32 ................................A ATCATATGGCGCTTTGCTGGAAGAGAAAAAGC 24453 33 100.0 35 ................................. TTTTGTCCAGTAATCCTGCTACGATGTCGGGGTCG 24385 33 97.0 32 ................................T ACCATTGAAATCATCCGAGGAGCGTCCGAAAG 24320 33 97.0 35 ................................A CGTTAAACCCAAAGAACGCATGCTCATGAATCGGA 24252 33 97.0 35 ................................A CGTTAAACCCAAAGAACGCATGCTCATGAATCGGA 24184 33 97.0 34 ................................T CATCCGACCAGTTCCGCCGGGCTAACTCGACGAC 24117 33 100.0 34 ................................. CGAATCTTTGAAGCGTGCCCAAACATTGCTTCTG 24050 33 100.0 34 ................................. TCGAGAACATCCAGCAGCACATCGAGTTAGGAAC 23983 33 97.0 32 ................................C TCCATTATGTATATTTTATATTATTAGTTGCA 23918 33 100.0 35 ................................. AACACTTTATTGCCCATCATGTCCGTGCTGCCTGT 23850 33 97.0 32 ................................C TTGCACAATACCACAGCGAGACAGCTAATCAT 23785 33 97.0 33 ................................T ACAAGATCATTCCAATCACTATCATCCGCATCA 23719 33 97.0 35 ................................T TCGGGATACCTTGAGTAAATTATCCCCCGGCTGTA 23651 33 100.0 33 ................................. TTTGTAACGATACAGGCACAATCAACGTTTTCG 23585 33 100.0 35 ................................. GATAGAAGGAAACGTATCCAATCATTTGAAACATC 23517 33 97.0 37 ................................A AAAATATAAAGTACTTGCCCAGCGCGTCCCGGAAACC 23447 33 100.0 33 ................................. AAGGAACTACGCATAGCAACATTTCTCTTTTTA 23381 33 100.0 33 ................................. AGTACGCATGCCATTGGACTTGGTCGGCTTGGT 23315 33 97.0 34 ................................C ATCTCGGAGCGTAAGTAAAGTCTGGTTTTACGCG 23248 33 97.0 35 ................................C CTGTAAATAAAGGAGAAGATAATAAATGGAGCTAA 23180 33 97.0 35 ................................T TTTGGTAGATGGCATTATGACAAGACGCGGCGGCG 23112 33 100.0 34 ................................. ATCCGCAGCAGGATGTCATTGTCTTACCAGGAGT 23045 33 97.0 32 ................................A GCCCAAGCTTGACGCAACGCCTCGGCCAAATA 22980 33 97.0 35 ................................T GCGGAAGGTTTTGAACTTGAATGAGCCGGCCTGCC 22912 33 97.0 34 ................................T GCTCAGGTTCATCAGCCCAAATTTTAGATTGTGT 22845 33 100.0 33 ................................. CGGGGATCTGTCCGCTGCAGGCGGGACGTTTAC 22779 33 97.0 34 ................................C TTGAAGATGTCGACAGGAACAACAGATCCGAAAC 22712 33 93.9 31 ..........T.....................A TCAAAGGTAGGAACGCTATGCGTTCCCGCTT 22648 32 75.8 0 ....A.....T..C......-......CCT..A | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 97.2 34 GTCGCATCCTACGTGGATGCGTGGATTGAAATG # Left flank : TGCGAACATCGTAATGACGGTCCCATTCGGTTTGTTTATGCCGATGCTGTATCCATTTGCCAGAAAAATCTATATAACCGCCTTGCTGGGCTTGGGGTTCTCCGCGACGATCGAATTGACCCAAGTCCTGTTTACAACGACACGCTCGGCTACCGTAGATGATCTGTTTTTTAATACGGTAGGCGCGGTGATCGGATTCTGCTGCTTCTATATTGGGAATTGGAAAGGGAAATTGGAGCAGATCGGGTATAAAGTTGAGAGGGAAAAGAGTACTGGGTAAGAACATTCTTCCGCCGATTACGGGATCGGCGGCCGGACGATTGTCAGGAAAGTGCGAATGTGAAGCGAACATGAATTTGCAGGGACATTCGCACCAGGATTTTAACTTTTATTAGTTTATAATCCAAAAAATACATTGCGATAAGTAGCGATTTTCTGGGTTTGAGTGTATATTTGATAATAAATAGCGATTTTTTAAGTCATTTTGATGAAAAATCGGA # Right flank : GTCACACGCGGAACCCGGAGCGCTAATCGAACAAACTAACACTCTCAAAGAACCGAGGGTGTTTTTTTGTTTTGCAAGCATAAGGTGACGAATTGTCGAAAATTATGGGTAATTTGGAAGGGGATTGAAGAATTCTGTCGAATTACTAATAAGCAAGATCAAATAGGTATTTTGAACTGATTATGGGTGAGGGGGGCAGAAATGACTTATATTGCTCACATCCGTGAAATTGACCATCAACAACAAACCGTGAAGGAGCATCTACTAGGGGTCAAAGAGTTAGCGGAATTGTTCGGAGAAAAAATCGGTGTCAAACATATCGCCGGATTAGCGGGCATGCTTCACGATTTGGGAAAATACACGAATGAGTTTAGACAATACATATTAGAAGCGGTTCATAATCCCGATTCTCCGCCGAAGCGAGGAAGCGTCGATCATTCAACCGCAGGCGGGAAATTATTATACAAGCTGTATCATCCCGGGATTGGCCAACCGTATAA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //