Array 1 128897-126247 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVSY01000020.1 Klebsiella pneumoniae strain CHAS CHAS_S49_R1_(paired)_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128896 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 128835 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 128774 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 128713 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 128651 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 128590 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 128529 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 128468 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 128407 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 128346 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 128285 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 128224 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 128163 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 128102 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 128041 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 127980 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 127919 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 127858 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 127797 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 127736 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 127675 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 127614 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 127553 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 127492 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 127431 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 127370 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 127309 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 127248 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 127187 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 127126 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 127065 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 127004 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 126943 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 126882 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 126821 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 126760 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 126699 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 126638 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 126577 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 126516 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 126455 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 126394 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 126333 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 126275 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //