Array 1 100705-106345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAD01000012.1 Geothermobacter hydrogeniphilus strain EPR-M contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100705 29 100.0 32 ............................. GTCATCTATTTTTAATGGACGATATTTTTCAA 100766 29 100.0 32 ............................. GCGGAAGCGGTGGCGGAATATTTGTTTTAAAG 100827 29 100.0 32 ............................. CCGGATTAGCTCAATTAGGTAGAGCACCTGAT 100888 29 100.0 32 ............................. ATCGGATGTTGTTTCAGGCGGCGGCTGATCGT 100949 29 100.0 32 ............................. CACTGATGCCCCCGGTGTCGGCCCTGCGTTGC 101010 29 100.0 32 ............................. GAGTTTGATATGTTTGATTGCTGTTGCGGACG 101071 29 100.0 32 ............................. CTGACATGCCGCTCCTCAGTCGTTTTTGTCGG 101132 29 100.0 32 ............................. TCTGTCGTCCCCTTGCTTGACCTGTTCCGGCC 101193 29 100.0 32 ............................. GTCGGGATCTCGATGTTCTGCTCCGAGGTCGG 101254 29 100.0 32 ............................. CACGGCATCTACTCATCAGTCCTCACGGATGA 101315 29 100.0 32 ............................. GAACTGTGGGGTGAGGTCAGGATCGGGTCGCT 101376 29 100.0 32 ............................. GATAACGAGGCGCTATTTGAGTCGGCCCGCAG 101437 29 100.0 32 ............................. GCGATGGACGACCTCAGGTTGCAGCTCTACAG 101498 29 100.0 32 ............................. TTTTTTGAGTGCCCTGTCTCGGCGATCACGCG 101559 29 100.0 32 ............................. AGTGATAAACCCAGAAGTCGTCGCCGGCTGCC 101620 29 100.0 32 ............................. GTAATCAATCCGGTTCCAACGTCGACGGAACG 101681 29 100.0 32 ............................. CCGTCAGTCGAGCCGGCCGTCACAGGGCAGGA 101742 29 100.0 32 ............................. TAACAATCATTGGCGATGGCCCCGATGCTATG 101803 29 100.0 32 ............................. CTGCGGTTTTGAGTACGTCATCTTGCGGTATC 101864 29 100.0 32 ............................. GCCGCAGTCACAACAGACCATTTTATAGCCTG 101925 29 100.0 32 ............................. GTCAGCAGCGGGATGGCCAGGTACGAACGGCT 101986 29 100.0 32 ............................. GTGGGATGATAACAACGGTGAAGGCAACGCGT 102047 29 100.0 32 ............................. GTCACAATCTGCTTGATGACAATCTCCTAGCT 102108 29 100.0 32 ............................. CTCCGCGCAACGAACCGCCGATGCCGGACGAC 102169 29 100.0 32 ............................. GCAATCTGTAAATTTTTGACCGACTGCGGTTG 102230 29 100.0 32 ............................. TGGGTATCCCTGTCCCAGTCACCACCCCACTT 102291 29 100.0 32 ............................. TCCGGACCCTTGTCGGCACGCAGCCGCTCTAT 102352 29 100.0 32 ............................. GCGACAGATCCTTCCTTCGCTGCGCTTGCAAA 102413 29 100.0 32 ............................. GCGCTGGCGTTGGAACTGGACCCGCCGATGAA 102474 29 96.6 32 ............................A TTAGCTAGAGATCGGGGAACCGGGATTTTAAA 102535 29 100.0 32 ............................. ATCGGCCATGCGTGACCTCTTCGTGCGTGGCT 102596 29 100.0 32 ............................. CTGACATGCTGCTCCTCAGTCGCTTCTTTTGT 102657 29 100.0 32 ............................. CTGATATCGCTCGGTGTCCTGGGCATTCACGT 102718 29 100.0 32 ............................. GGGGGCTAGTAATACCCCCCTTTAGTCTCATT 102779 29 100.0 32 ............................. CTCGACCAACACCACCAACGTCTCAAAAATCA 102840 29 96.6 32 ............................T GGGACGCTCCCGGCCCGCTCCCGGCCGGATAT 102901 29 100.0 32 ............................. AGGTCTCGGGCGCTATCGGCTCCAACGCTGTT 102962 29 100.0 32 ............................. CCTCTGCCGTCTCAGGACGGCGTCTATGACGG 103023 29 100.0 32 ............................. ATGCAAACAGACAGCAGAAATAACAATAGAAA 103084 29 100.0 32 ............................. TCCTTCTGGGCCACCTCGGGGGTCTGCACGGT 103145 29 100.0 32 ............................. GTGTTGGCAGACACAGACCTGGTGGTGACCGT 103206 29 96.6 32 ............................T TAATATAATTGACGGTGTGTTCTTCATCTGGA 103267 29 100.0 32 ............................. CACCGGAGGGGCGCATGAGGCGAGGAGCAGTG 103328 29 100.0 32 ............................. CATGTCAGATACCTCCTGGCTCTGGTCCGTTG 103389 29 100.0 32 ............................. GTGGGAGTCTGGACGCGTACCACCGTTCCCGG 103450 29 100.0 32 ............................. GCCTGATAAAAGAGTAGGCGCTCATCAGAGAT 103511 29 96.6 32 ............................T CGTCGGTGACCTGGATGGACGATGCGGCACCC 103572 29 100.0 32 ............................. CCAGCACCTCGTCACACCCTCGCGCCATTGTG 103633 29 100.0 32 ............................. ACGGCGTAGAGGTCTTTGAACGTGGTGTAGGC 103694 29 100.0 32 ............................. TGAGCACCAACAGCGGCCATTATCTTGTTTAG 103755 29 100.0 32 ............................. CATGTCAGATACCTCCTGGCTCTGGTCCGTTG 103816 29 100.0 32 ............................. GTGGGAGTCTGGACGCGTACCACCGTTCCCGG 103877 29 100.0 32 ............................. GCCTGATAAAAGAGTAGGCGCTCATCAGAGAT 103938 29 100.0 32 ............................. AGCACACCGATTCAAACGGCGCTCACGTGAAA 103999 29 100.0 32 ............................. GTTGATTTTCGCATCATGCCCCCATTACGCCA 104060 29 100.0 32 ............................. TTCACCATCCACGGCCCCGGGGAATATATCGG 104121 29 100.0 32 ............................. CCGACACGCCGGCCAGGAGCGCGACCGGGGAG 104182 29 100.0 32 ............................. CTGTTCGACGCGCTGGGAGAGTTGCCAGTGCA 104243 29 100.0 32 ............................. CGACATGAAAATAAACATTTACCTTTATCCTT 104304 29 100.0 32 ............................. GGAACTTGATCGTATGTTGGAAAACCGCAACA 104365 29 100.0 32 ............................. GATCCTTTCAAATGACCGAGAGGCAGCTAGCA 104426 29 100.0 32 ............................. GAGGCATCATAACTTCCCCCTCTCCCCCACAC 104487 29 100.0 32 ............................. GCGTTTTCGGAGGTTTCGTCGGCGGCTGAATA 104548 29 100.0 32 ............................. ACGGCAGCATCAACTCGCTGGCTCACCATATC 104609 29 100.0 32 ............................. AGGCCGAACAGCTCACCACCCTGGAAGAAGAA 104670 29 100.0 32 ............................. ATGATCAACTCCCGAAGGCTGTCTGCAGACAA 104731 29 96.6 32 ............................C ACTGGGGTCGCCGCTGCAGTGAGCACGTTTTA 104792 29 100.0 32 ............................. GCTGTTATTTGCATGGCAGCATGGGCAACGAT 104853 29 100.0 32 ............................. GAAATATTTGCCCCACCAATGGCGGCGTCACA 104914 29 100.0 32 ............................. GAGGTCTTCATGATTGCTGCTATTGCCGCGCT 104975 29 100.0 32 ............................. ATACAGGCAACAACAAAACAACAGGAGGATGC 105036 29 100.0 32 ............................. CGACATGAGGTCTTGAAAAAACGGATCATCAT 105097 29 100.0 32 ............................. ACGCGGGCCGGGCTGTTGTCGCACATGCGGCG 105158 29 100.0 32 ............................. GTTCTGCAATCTCTCCGTGATCAGTTTGGTTT 105219 29 100.0 32 ............................. CTGAAGAAATTCACCTACCCCGAGGCGGACCT 105280 29 100.0 32 ............................. GATTCCTGCCTTTACCTGGCCGCCATTGGTGA 105341 29 100.0 32 ............................. ATCTGGAACTCTTGAAAATCGGGGGTACGATA 105402 29 100.0 32 ............................. CCATCCCACCGCCTCACCGTCCAGCGCGAGCA 105463 29 100.0 32 ............................. ATCAAGGAGCGGCTGATCCGCATGGTGCTGGT 105524 29 100.0 32 ............................. TCCGAGGCGAAGCTCTCGCTAAAAGCTATCGT 105585 29 100.0 32 ............................. TCCGCTCATTGTTCACCGGGCGTTGATGCCCA 105646 29 100.0 32 ............................. TTTGATGTCAATCGTTGTTGATTTGTCTGACC 105707 29 100.0 32 ............................. GCGCGGGTCTGCATCGGGCGGCAGTTCCAGGC 105768 29 96.6 32 ............................C AGGATGCTGCCGTCATCGCGCTCTCTGGTCTC 105829 29 100.0 32 ............................. ACCTGGCGCGAACGTCTCGCGTTCTGGTTCGG 105890 29 96.6 32 ............................A GGACGTTACCGTTTATGACCTGTCCGTGACTC 105951 29 100.0 32 ............................. CAGATCATCAACGCCGTCGCCCTCCAGGTAAT 106012 29 100.0 32 ............................. CTGCCGAGCGTGACGGTCAAAACAGCGGGCAT 106073 29 100.0 32 ............................. ATGGCGTTCGATGCCGCCGACGGTGCGGCATC 106134 29 100.0 32 ............................. ATCTGCAGGCACTCGTCGAGGTTGTCTGACTC 106195 29 96.6 32 ................T............ AGGCTCATTTCTTGCCCCCTTTCTTTTTGACG 106256 29 100.0 32 ............................. GCCATGGAAAGACAGAACCTGGCCGTCAGGGA 106317 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 93 29 99.7 32 CTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : AATTATTAAAACGAATCATTCCCGTCATTGAGGAAGTCTTAAGTGCCGGCGAGATTGAACCGCCCAAACCACACGAAGAAGCTGTTGAAATTGCAATCCCCAACAAGGAAGGGATAGGTGATGTTGGTCATCGTAGTTGAAAATGTACCGCCTCGTCTTCGTGGACGATTGGCTCTATGGCTTCTTGAAGTTCGAGCTGGGGTGTACGTCGGAAAGGTCTCAAAACGGGTTCAAGAAATGATCTGGGATAATGTAGAAAAAGGTATTGACGAAGGGAATGCAGTCATGGCCTGGTCATCGAATACCGAGTCAGGATTTGACTTTTCAACCTTGGGTGTAAACCGCCGCACCCCTAAAGAGATGGAAGGTCTCAAGCTTGTCTCTTTTCTTCCTGAAGGAGGCAAATTGGACCAAGAAAATGTGCCCAATTTTTAATCATAATTTCCGGTAGAATTATCTGGTCTTTGAAAAGTGAATATTTTCATAAAGATAGAAGAAGT # Right flank : GTAAACGATCCTAATAAGCGGAAACCCTTGGTCGCCCCCTCACGGGGGCGCGGATTGAAACAAGCCGACAACCTGATCATCACCCCCAACGAGCCGGGAGATTACCAGAATAGCCTCGACATCAACAGCCGCCGTTGAAAACTTGATTTTCACCTCAAAACAGCGCACATTCTGCGGATGACTTCTTCCGCAACCACAGCAGCTGAGAACCGCTCCCGGCAGGGCGTCCTCCTCGGTCTCGCCGCCTACACCATCTGGGGCTCCTTCCCGATCTTCTTCAAAGCCCTGACCGGCGCCGCGCCGCTGGAAATCGTCTGTCACCGGATCTTCTGGTCGGCAGTTTTCCTCAGCCTGCTGGTTCTCCTCCGCGGCCGACTCGGCGCCATCCGCCGGACCTTCGCCGACCGGACACTGCTGCTGACGCTGTGCGGCTCGACGCTGCTGATCGCCTGCAACTGGCTGGTCTTCATCTACGCGGTGCAGGTCGGCGAGGTACTGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //