Array 1 52-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUR01000015.1 Fusobacterium nucleatum W1481 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 52 36 100.0 40 .................................... TAAGTATCAATATGATTTAATGGATGAGTAGAATAGTCTA 128 36 100.0 39 .................................... TTATAATATCCTTCATTGTCTGGGTCATCAAATTCCCAT 203 36 100.0 37 .................................... TTATGACAAGTCAAGCTATGCAAATTCAGAAATGCAA 276 36 100.0 39 .................................... ATGCCCCTGTTGTTAATGTTAAAAGACCCTCTCTTACCC 351 36 100.0 37 .................................... TGATTTTCTTCTGTTCCAGCTTCTCCATTTTTTACAC 424 36 100.0 42 .................................... CTATTTTTTATTAAAATTTCTAATTCCTCTAATTCTTGTGTA 502 36 100.0 39 .................................... TTTCCAAATTTCCTTAACTGCTTCAACTTCAACTTTCAA 577 36 100.0 35 .................................... AAAAGTTTACTGATACTCTTGCATATATTCCTGAA 648 36 100.0 43 .................................... GCTATGGGTACTAGATACTTTTATGAATGCTTATGGAGTTAGA 727 36 100.0 42 .................................... CTCCATAATTTCTTTCTTTGAAATATTCTATTTCTTTTTTAT 805 36 97.2 40 ......................G............. GGAGATGCTCTTTGTTGTGAATGAATTAGGATATTTTTTA 881 36 91.7 42 ......G...............G..A.......... AATAATACCTCTTTTTTCATTAATGTTGTATTCAAAAACTCC 959 35 77.8 0 .....TG..G.......C.T......-..T.....T | T [980] ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 97.4 40 ATAAGAAAGAATATAACTCCGAAAGGAGACGGAAAC # Left flank : AAGGAGACGGAAACTCCATCAATCTTTTCTTTTCTTCTTCTACAAAGAAAAA # Right flank : TTAAAAGTATAGTCTTCTATGAAAAAACTAGAGTATCATAGAGGACTATATTTATTTAAGTAAAAGTAAAATAAAAAAGGTATTCAAAAATGAATACCTAATTTTAGAATATTAAGAGCTATTAAAGTAACTTAGGGGCATTAGAATTTATTTTATCTATAATATTAACAATTTTTTGTAAATCATTATTATCTGTAAAAATATTAGAAATTGATGTACCTAAAATATCATTTGAAAGTTTAGGAATTTCATTTTTTGAATAAGCACCATACTTTACTATGTTTTCAATTATTAAATTAATCAATTCAATTTGATTAGAATTAAATCTTTCAGTATTTAAAAATTCTGAAAATTCTTTATTAATGGCTTCTCTATCCAAGCCAACAAGAGAACGAATAAAGATGCCAAAACTTCCGTTTTTTCCATAGATATTTGATATTTTTTCAATTTCTGAGTTATTTTCACTTTTTAAACTTTCAAGGTCAACTTCTTCATTGCTA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAAGAATATAACTCCGAAAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 49218-49514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUR01000037.1 Fusobacterium nucleatum W1481 Contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 49218 31 100.0 35 ............................... TTGATGTTTGTTGGTAATTCAACCTTTATGGCTTC 49284 31 100.0 35 ............................... ACAACAGACAAAATTATCACTTTTAAATATAAAAT 49350 31 100.0 35 ............................... CCGATAAAAGTGGTTATAAAAGATATAAAAATTCT 49416 31 100.0 35 ............................... ACTGCAAGAGCTAATGCAACTAATGGAAATTTAGT 49482 31 90.3 0 ................A.........T...G | A,A [49506,49509] ========== ====== ====== ====== =============================== =================================== ================== 5 31 98.1 35 AATTAACCTTAAACATGAAATGTTTTGAAAT # Left flank : TGTTAAGAAAATCATCATAAAATTAAATGAAAAAACTCAAACAGGATATATGCCTAGTTTAGAAAGAGTTAAAGAAATAATGAGATTAACAAGAGATATTAATGATGCTGATGGAATTGTAGAAGTTACTCAAGCACTTGGAAGTTTAACAGCCTATATGGCAACTATTATGATTGATATAAGGGAACTTTTAATAGATCAAAACCAATTAGTTGCAAATGTTAGTGCAGCAGAAGAAACAGAGAAAGATACTGTTAAGCAAAGGCAAAAAGAAGAGGAAGAAGAAAACGAGAGAATACATGAAGAACTTAAAAAGATATCAGAAAAGGAAGCTAAAAAAGGACTAAGAATTGATTTTAAAAAAATAAGATAAGGGAGAGAAAAAGATGTTTAAAAGAATTAGGAATATATTTCAATTACAGAATATTTATACTTTTATTGCAATAGTAATATTTGGAGTTATTTTAAATAGGATAAAGATAGCACATTTAAGTAAGATA # Right flank : GCCTGGATATCTATTATCTTTTAATATTAAATTGTTTTATAGGAAGAAAAATGAATAGAAATATTATTTTATTAAAAGAGAGGAATAACTAAAATCATCTAATTACAGTCAAATATTATATAACATAAATATATGGAAATAAAATATACTAAAAAGAAAGGATTCAACGAGAAACTAAAAAGAGAAACTAAAAAAATTTTAAAGGAATAGAAAAGATTACAAAGTTTAGTTTTAATTCCTGAAATTATACTGATATGAGTTTTGAGGAAATAATAAATAATATAAATTCATAAATAATTGTTAAATAATTAAAAGTGTAAAATGAAGAATAATAATATTAGTGAATTTTATTTAAAAGTTATTGGAACAAGGAGGAAAATATGAAAAAATTTTCTATTCATGGAACAGAAGAAGGAAATACAGCATCAATTAAACTAGATGAAATTGCAATTTTAGCAGATCCAGATACTCTTCTTAAAATAGGAGAATTCATAATAAAA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAACCTTAAACATGAAATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2382-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUR01000070.1 Fusobacterium nucleatum W1481 Contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2381 36 100.0 44 .................................... CGGATGCCGATACATCCGTTTCTTAAATTTTAAGTAGGACTTTA 2301 36 100.0 42 .................................... TAGATATTCATAATCTACACTACATGATAAATATTCATCTAA 2223 36 100.0 39 .................................... TTAAATTGTCTTTCTAAATTTTTCATAATTTACTACCTA 2148 36 100.0 35 .................................... TGTCTTGATAACTTTCAGATATATCAAGGTAAACT 2077 36 100.0 42 .................................... TTAATGGCTATTTTTAACTCTTTATGGAGTAGGTGGAGTTAA 1999 36 100.0 42 .................................... TTTAGTGGCTTCTAAAATAGCGTTACTTAACTTATCATCAGA 1921 36 100.0 38 .................................... TTTAATCTCCTTTTTTTTATTAAAATAGCTGGATACTT 1847 36 100.0 38 .................................... TTTATAAAAATNNNNNNNNNNNNNTAAAAAATACTTGA 1773 36 100.0 39 .................................... CAATACTTCGGGTATGGCTTTCGATACTTATCGTTTATT 1698 36 100.0 38 .................................... CATACTTATGCTCATATCCTATAACTTCAATATTGACA 1624 36 100.0 35 .................................... TTGGTTCTCTTTCCAATACTTCGGGTACAGTTCCC 1553 36 100.0 40 .................................... ATTTTGACTTTCAGCATATGATGGAGAGATTTCATCTCTA 1477 36 100.0 41 .................................... TATTTAAGAGAAAATAATCTCAATAGATATGAAGTTGCTAA 1400 36 100.0 39 .................................... CTTGTTTTTGTGATACCATAAGAGTATCACACTTTTAAA 1325 36 100.0 41 .................................... TTTTTAATGCTTTGGATATAGCCGCATTAATAGCTATTTTT 1248 36 100.0 43 .................................... GTATAAGTAAATCCTTACACATATAACTTTGCTCCCAAGTAAC 1169 36 100.0 43 .................................... TTTAACTAATTTAAATTGTTCTTTCATTTTTATTTCTCCTTTA 1090 36 100.0 42 .................................... TTAAATCTCCAGTCACATCTATCTTCGTCCCACCATAGACAA 1012 36 100.0 41 .................................... AATAAAATTTAATATTTATTTGTCAATGTCCCGCTTTTTAT 935 36 100.0 37 .................................... AAAGCATTTTTAATGGAATATGATCCTAAGTATGCTG 862 36 100.0 41 .................................... TTTTATATTTTCTAAAAGTATTTAAAATTTTTGCTTCATGT 785 36 100.0 43 .................................... CTATTTTCTATATCAACATCTATAAATTTATCTATTATGTTTT 706 36 100.0 42 .................................... TGATTTGAGCGCTGTCTTGACGGGAGGCCTGGTGAAATTGTA 628 36 100.0 41 .................................... TTTTGTTTGTGTTGATACAGCCAATGGAGCAAGTATTAAAA 551 36 100.0 39 .................................... GGATTATTTTCTATACTCCATTTACTTATAATATCATAA 476 36 100.0 39 .................................... TATATCCAAGACTTGCTTCATAAATTCCATATCACTTAA 401 36 100.0 44 .................................... TCTATGGCATTTGCACCTCTTAAATGGTTATCAAATGCTAGTTT 321 36 100.0 41 .................................... ACATTTATATTGATAAACGAGACTTAAGGCTTTTTTATTTA 244 36 100.0 41 .................................... GGATTAAGATGGATGAAGATTGGAAGTGGGTTGGATTTATA 167 36 100.0 41 .................................... TGGTCTTCGTAGTACATTCCAATCATTTGTCCTTGTACAGC 90 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 31 36 100.0 40 ATAAGAAAGAATATAACTCCGAAAGGAGACGGAAAC # Left flank : TGTAGAAATATATAAACCAGTTCTAATTAGGTGATATTATGGATAATTGGGATTTTTTAGATAAAGATTTTGAAAAAGAAATTTTTGAAGATAACTTCACAGTTATTATAATATATGATATTATATCCAATAAGAGAAGAACACAATTGTCTAAACTTTTAAGTGCATTTGGGTTTAGAATACAAAAATCAGCATTTGAGTGTTTGCTAACAAGAGAAAAGTATAAATTACTTATTGAAAAGATTGATAAGTATGCTAAACCTGAAGATTTAATAAGAATTTATCGCTTGAATCAAAATGTAGTAACTCAAATATATGGAGAAAAATTAGAAAATGAAAATGAGATGTATTATTTTTTCTAATAAAAAGTAGACGATATACTAAAAGTGGGAGGTCTGATATGATTTTTTTAANNNNNNNNNNNNNNNNNNNAAAAATTAAAAAGTCATACGATAATAGCTTTATAAACTATTACAAACAAAATGTTTTTTGACCATAGG # Right flank : CTATAACAGAAGAATGTAGCATCCAACATACCACAAATAACAATAAGAAAGAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAAGAATATAACTCCGAAAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //