Array 1 2285024-2284019 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2285023 29 100.0 32 ............................. ATGCTGACAGGCCGTCTTTCCTTCGATATGCA 2284962 29 100.0 32 ............................. GCCTGACAATAGTGCACGGCAGCGGCAACGCA 2284901 29 100.0 32 ............................. GCGGTTGACTTCGAGTCACGCGGATTCGGTAA 2284840 29 100.0 32 ............................. TGCGGATGATTTTTAACCCCTCGAAGGAATTT 2284779 29 100.0 32 ............................. AGGGTCTTGTACTTGCTGGTGCTGGTGGTGGC 2284718 29 96.6 32 ...A......................... CCGCTCACCCGTGGGTGGTGGAGCGGGATTAT 2284657 29 100.0 32 ............................. GCCGAGCTTGACGTAACCTGGGATGCGTTCGC 2284596 29 100.0 32 ............................. CCGCAGCAGCCCGCCATGCATTGTCAGCAATA 2284535 29 100.0 32 ............................. ACCAGTGGTCAGGAGTTTGACCGTGCAATGCG 2284474 29 100.0 32 ............................. TTTTAGCGGGGAGCCCCGTTCCGTCTTAGTAC 2284413 29 100.0 32 ............................. CGCCAAAACAACAATCAACGCCGCACCAATGG 2284352 29 100.0 32 ............................. TGAACGTCGACCCGGCAGCATACCCGATGCGC 2284291 29 100.0 32 ............................. ATTTTTTCTCCATCGCTGGCCGCTGGCGTCAA 2284230 29 100.0 32 ............................. AGCATTAGCGCTGCCGATCCCCGCGCCACTGG 2284169 29 96.6 32 ............................A TCAGCGCATCATTATTCATAATGGGATATTCC 2284108 29 100.0 32 ............................. GTCACTGGTGGCGCCGGTGATTCGGCCCACCT 2284047 29 86.2 0 ....................C..C..TT. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CCTTCACCGGCGCCTTCTACGGCGTGGTGCCGGAAGACAAGCAATTCCTCGGCGGCGAATCGGTCGGCGAATTGATGGACCGCGTGTTTCCCGCGCTGGACAAACTGCGCGCCGACCCGTCGTGGGACACCGTGCTGCTGGTCTTGCACGGCGGCGTCAACCGGGCGATCCTGTCCTACGCACTGACCGGCCAGCGCCTCTTCCTCGGCAACATGGCGCAAACGGCAGGCTGCATCAACGCACTCGACGTCGGCACCGAAGAGCACGACTGGGTAGTCCGCTTCACCAACTTCGCCCCGCCGGGACCGCTGCAACTGCATACCCGCAGCACGACGATGGAACAGTTGCTGGAGCAGTACAAGAGGTCGCGCAGATAGGCTGTTTGAGAGCGCTGATGCCGCCGAAAAACATCCATATCAATGCTTCTCCAAAACGCCTGAAAAATCGGTAGAAAAATCATATGCCATTTAAGTTATTGTAATCAATGACTTATAATTGGT # Right flank : AATGCTTTCCGCAGATACGATTAGTTCGATACAGGCAGGTGGTACATTTATCGGCACGGCGTTGAGGATGGCAAAACCGTCATGAAGGCGCTTGAGCATAACCAGTCCGCCGCCCGCGCCCCCACTGCTCGGCATCCGCGCCCCGGCCCACAACATGAACCCACTGTCACGACGCTTGCATGCGACACGGTGCCAGGAATAATCGCGCAGGTTCGCCGATAACGATGACGATGAATAAAAAATTACCTTGAAAATAAATACTCAATTAGTAATATTTTTTCATTAAACGATGTATAATTAATATTTGTGTTATTGATAATTAAATAGGGAAAATGAAAAAGATACATTTCGCCAAACTGCTGCTGAGCACTCTCATCGTCAGCGCATCCATGCATGCCCACGCCACCACATACTCCAACGTTGGCCTATCGTCGACCCCCATTTGGACTTTCGGCAAAGGAGCGACCCCGAATTACGGCGAAACCTTCACCTCGCCCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3464504-3463926 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3464503 29 100.0 32 ............................. TCGCGTGATGTAGCTGGTGTTTGTATCATTGC 3464442 29 100.0 32 ............................. GCCATTCAAATAGCGGAAACGCAGCCTAATAG 3464381 29 100.0 32 ............................. GTTGGCGTATTCCCTTATCTCGGCTCGCAAAT 3464320 29 100.0 32 ............................. TTAGGATGGCTGGACGATATAGACGAAACACC 3464259 29 100.0 32 ............................. TCATGAAGGCCATCGGTGGTCGCCTGCCTGAC 3464198 29 100.0 32 ............................. CCAGATAATCATTGCGCGCCTCCGCGTTTTTT 3464137 29 100.0 32 ............................. CAGATGATGTGTCTCATAATCCGTTGGTGCCG 3464076 29 96.6 32 ............................T ATTGATGACGTATCCATGCGAGGCGCGCCATC 3464015 29 100.0 32 ............................. CGCCGTATCGCGGACAAATTGTTGACGTTGTT 3463954 29 89.7 0 ..................A....A....A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TATTGAAACCATCCTCGCGGCAGGTGGTTTGACGGCGCCCGAGCCGTCCGAAGAATCGATGCCGCCAGCCATCCCCAATCCTGAAAGTATCGGCGATGCTGGTCATCGTTCTTGAAAACGCGCCGCCACGCCTGCGCGGCAGGCTGGCCATCTGGCTGCTGGAAATTCGCGCCGGCGTCTACGTCGGCAACTATTCAAGGAAATTGCGCGAGCAGATGTGGCTGCAAGTCGAGCAAGGCCTGGAAACCGGCAACGCCGTGATGGCATGGCGCGCCAGCAACGAAGCGGGCTTCGACTTCGTCACCCTCGGCGAAAATCGGCGCATGACCGCCGAAATGGATGGCGCCAAACTGGTGTCGTTTTTCCCGGTTGACGATGGCTTGTCAGAGTAGTCCAACGCGCCAATCGCACCGCTCTCTAACAATCAAAATCTCCCCCCTGAAATCGGTAGAAAATTCACCTGTCGTTTAAGCCATTGTAATCAATGACTTATAATTGGT # Right flank : CGGGTGACTTCGAGATATCGCCAGCTTTTCGCGTGTTGCTCATGCCTGTAGCGAGGTTTATTCGGGAGCGGCAGTAATACCCTCCCGATCGAGGACCTGTGCGATCAACAGGCTGAGTCGATGTCACAGCTGCGCAAGATATTCGGTAAATAGATCCGGCAAAAATCGAGATACGCCAGCACGATGGCAGATGGGTGGCGATGGGATGGATAAAGCAAGTTGATGTCGACCTCGGGAAGCGGGTGCTGCGTCAGTAATGGCAGCAGGCGTTTCGCCTTGATGTGAGGGGCGGCCAGGAATGGCGGCAGCTCGGTGATCACATGACCGTCGAGCGCCCAATGGCATAAGTGTTGGTAGTCATTGACACGCAGCATCATCTTTGGCGCGACGGTATGGCTGCCTAATTTCCATCGGGCTACGTCATCAATGCGCGACGCCCACGCGGCGCATGGAAATTGATGCAGCGTGTCTGGTTGTGCCGGCATGCCATATCGCTCTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3474554-3473805 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3474553 29 100.0 33 ............................. TATGGCGGTATGTCGGAACGTAGGTCGCGCAAT 3474491 29 100.0 32 ............................. TTGTCCGGCTTGTCTTCCACGGCCGCCTGGTG 3474430 29 100.0 32 ............................. TACTGGACGCCGCCCAACTGCGCGTTGATGCG 3474369 29 100.0 32 ............................. GCGGCATCATCAGGAAAATAAGGCACCTGCAC 3474308 29 100.0 32 ............................. TGGGGTCAGTACGACCTGTGGGTCTACAACGA 3474247 29 100.0 32 ............................. GCCCAGGCCATCGAGCACGTCGAAGCGTCGGC 3474186 29 100.0 32 ............................. TCAAAACCATGCGCTCAGCGTCATCACCCAAA 3474125 29 100.0 32 ............................. TGGTAATCGGAGTTGTCCATCAATCGTTCCGC 3474064 29 96.6 32 .................A........... GGCAGTAGCGATGCCTACGCCGCCGACGTGAT 3474003 28 72.4 32 ........GTTT.T.-..A.........A ACCATCTTTGATGCAGCTCGGCAAACCAGCAA 3473943 29 75.9 20 ....C.T.....T.A...A...CA..... CTATGATCTGTAATCGTTAT Deletion [3473895] 3473894 29 82.8 32 A.......A...ATT.............. AGGGAAAGTATGGTTTGGATACGGTCCATACG 3473833 29 79.3 0 ........T...ATT..A........T.. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 92.8 31 GTGTTCCCCGCGCAGGCGGGGATGAACCG # Left flank : ACGCCGCCATGGTGCGAGCAAGTTCCCCGTGCGCTTTTACTGAAACTATACGACCCGTCGCGGCATAAGGCCGACGCTCCCTGTGGCACTTTGCCGGTCTTGCTTTTTGCCGGCGAATGTACTTCCTCGCCATCCTTATTCCTGTAATGACCATGCTGCTGCAAGTCGGCCTCGTTGGGTTCGGCCTTTTGCGCGTAAGCAGGTGATTTACTGTCCCTGGCTTCGACTGACGATAGGGAATAAGGAGAAAAGACAAGCAGCAGTATGACAAGCAGGCGGCGCAGGTTCATCGTGAGATTATTGTTTTCACGGCATACCAATGTGCCGTTGCATGATTGATTATATGAAATTATTTTATTTATTGACAAATTTCATTATGGGCGGGTGCTTGTTTTTGGTGATCAAAGTGGCGTGCTTCTTTAATGATTTAAACCCCCTGAAAAATCGGTAGAAAATTCACCTGTCATATAAATCATTGTAATCAATGACTTATAATTGGT # Right flank : GCCGCGAGTTCGAGTACCACCGCTACACTAAGAGCCTATCCCAGTAGATGAATACGCCCTCTTCTGGCGCCCCTCAGTAGCGGGGACTGCGTTGCTCGTCGTCGCGTGGCTCGCCACGCTTCCTCCTCACGCCTGGTCCGCGCTGCTGATGCGCTGCCAGCAGAAGACGCTCACTACTGGGATAGGCTCTAAATTTTTATGCAATGGTACTGAGGTGCAGAGGCGCCATATCGAGATTTTTTCGGACAGTATGCATTCCTCAGCAGAATATTGATGCATGTCTAAACATTCTCGGTGCAGTCAGTAAAAGCATTTGTAGTGATATATATCAATAGCCCTAATATTTTATTTGCTTGATGATTTGATTGGCAATCGTTTAATATCGATTGCTGATTTTAAATGAGAGAGCAAGCCATTGAACAGGGAAGCGTTGTATTACCCTTATTGGGGTAAGGCAAAACCGTCCGAGGCAGGACAAGCCGATTTTCATTTGTTGATTT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //