Array 1 272330-274528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039375.1 Halomicrobium mukohataei strain JP60 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 272330 30 100.0 37 .............................. TGCGTCGTCCGGTGGCCGTCAATAAATGTCGCAAGGG 272397 30 100.0 35 .............................. TCCTACGACCTCGTCGGCGTCAACGGCTGGCCCGA 272462 30 100.0 35 .............................. CACCCTACAACAGGTGAAATCTACCAGACAAAAGA 272527 30 100.0 36 .............................. TCACCCAAGCGCAAGCAACAGCTGATCGAGGACCTG 272593 30 100.0 36 .............................. GCGACGGCGGCCAGTTCCGCGAGGGCGGGAAGGTCC 272659 30 100.0 36 .............................. TGCGAGTGTTGCGGGGAACCGACTCGGGTAGGCCAG 272725 30 100.0 37 .............................. ACGGTTTCGCTACCACCATCGCCACCAGCAACTGCCG 272792 30 100.0 33 .............................. GACGAGTATGCCAACCGGCTCGTGAGCGGGCGC 272855 30 100.0 35 .............................. TGGTAGGCGTCGTAGGTGTTCGTGGCGAGCGTGTC 272920 30 100.0 36 .............................. ACTCACTGGATTATGACCCCTACAACGAGGGCGTCA 272986 30 100.0 37 .............................. GGATCTCGATCGTTGTAGTATCCATAGCTGCTATACC 273053 30 100.0 37 .............................. GAAGTAACGCAACTCCAGTGAGCGCTACTGAGAGCCC 273120 30 100.0 36 .............................. CCGATCACGCCCTGCCGATACTGGTAGTTCGCGATA 273186 30 100.0 34 .............................. TCGTCGGCCGGCTCGTCGGCCGACGTGGACTTGC 273250 30 100.0 37 .............................. AGTAGGTCTAATGTCTCTCTGTCGTCTATCAGCCCCG 273317 30 100.0 36 .............................. GCTCTCCGGTGTCACAGGTCAGGTCACGGTCTCCGC 273383 30 100.0 35 .............................. ACGGACAAGTCATCCACCCGCCAGTATCTCCCGGT 273448 30 100.0 37 .............................. AAATACGATCCTGCGGTGACGCTACGTCCGGGGCAGC 273515 30 100.0 36 .............................. CAGATGTGGGGTCTGTGGCCACAGTCTAACATCTCT 273581 30 100.0 35 .............................. CCTGATAACGGACTCTTGTAGGTCCGTTAGGTCGT 273646 30 100.0 36 .............................. AAAAATGAGTGACGTAGACATTCGGCAAAATGCCGG 273712 30 100.0 35 .............................. CAGCAGCGAAACGAGCCGTCCGTCCTTTTGAGACA 273777 30 100.0 38 .............................. GTCTAGCCCAGTCTGGTCGGGGTGGTCGGCAGGATCGG 273845 30 100.0 35 .............................. CACTCCTCATATGTCTGTTCGAGCAGCGGGACGTG 273910 30 100.0 37 .............................. ACCGTTGCCGCCGATCGGCAGCGAGCCGGTGATGTGT 273977 30 100.0 35 .............................. TCAAAGCGAGCCTCGAACGCGACGACGAAGATATG 274042 30 100.0 36 .............................. TCCTCCTTGTACCCACGGTCTTGCCGATCCATCCCG 274108 30 96.7 37 ........T..................... GACTGGCGTGTTGCCGTTCAGGCCGGCGTTGATCCCG 274175 30 100.0 35 .............................. CTCAGCAGCAGTCAACGGCATTTTATACACCTTGT 274240 30 100.0 35 .............................. CACCCCTTCCGGGGAGACGAGGAAACCCCGGACGA 274305 30 100.0 34 .............................. GTCACGCTGTCTGACGATATGGCTGACCAGGTGC 274369 30 100.0 33 .............................. CACTCCTGGGCGGCCTCATCGGCGGCCATCGTC 274432 30 96.7 36 .............T................ GTTGTGTGAGGTATGCGATGGACACCACCGATCACG 274498 30 83.3 0 .......................CC.GCA. | C [274523] ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.3 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GTAGTTGTCCGTGAACCCGCTGATGACCTCGTGAATGAATTGGGTTCGCTCCTCGGTTAGCACTCCGCGCCGGTATTTCGTGGTGAGTATCAGGTGGTAGTGCAGGGAAAACGTCGAGTGCGCTCCCGAGTCGAGGTCGTACTCCATTAGGTTCAGTCAATATGATACTACCCTATTGCAAAAACATTGTGATTACGTGGGCCTGTGGGCTTTCTATCGAATTGTGTATGAGAACTGTGCAGCGTTAACGAGATGCTCGCGTCTCGTTCGCACACCAGAATCTTTGATTCTGGGGACGCTGTATCCCCTCCCTGCTCGCGCCTCCTGTTCGGTCGGCGCTCGCTGAGGAAGGGGGCTTAGCGCCTCAATTCAGCTAATACTGCCGGCAGTACAACCCCACTTCCATCGACCCCCCGGGGGTTCGGGGGCTATCGAAGGTCGACGGAAACGATGAAGTGTGAACGGCGAATAGAGGTGCATACGTGGCCTAATCGGCCATG # Right flank : CTGTCGCTGGGGACGATCGGCTCACTTCTTTCGGATCGTCCCGCCGCCGAGCCCCTCCCACTCGACTCGGTATCCGAGCGCCGACAGGACGGCGCTGGCGTCGTCGAGCCCGTACTCGTCGAGGACCGCCTCGGCGGCCGACAGCGACATTCCGGTCTCGATCTCGTCGTCGACCGCCGACAGCACGGCCGGCCTGACCAGCGTCCGCCCGACGCGCTCGTGGTCGGGAACGGATCGGTCCTCGACAGCGGCCTCGCTGACGCCGTGTTCCGCGGCCAGTTCGGCGAGCGTGAGCACGTCGGCGTCGGGAGTGAGTGTCTGGGGGAGCGTCGCGGCGTTTGCCGCCGTCAGTTCCGACTCGTATCGGCCCAGTGCGTCGCGAACGTCTTTGATCCGGACGGTGCCCGAGTAGGGGATGGCTCGGTGGTCGCGGGCCTCGATCTCCGCGCCGATATCGCCGGACTCGGTCCGTGAGGCCGACTGCTGGTCGCCGACCGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60269-57339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039376.1 Halomicrobium mukohataei strain JP60 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 60268 30 100.0 35 .............................. GAGTGAGTGATGGCTCCTGAAAAAAAGAAACGTGT 60203 30 100.0 35 .............................. GGCGAGTAGAGCATCGCCACCAGTGTACCCGGAGT 60138 30 100.0 38 .............................. AGTTACTGGTAACCCCTCTGACACCACGTCCGCAGCGC 60070 30 100.0 37 .............................. TGACTTCTGGAGCGCACGACGGAGGTCGTCGAGCGTA 60003 30 100.0 35 .............................. TGCCTTCTCAGTTTTCGCCTTCCAGTAGAAGTCTG 59938 30 100.0 36 .............................. AACATGAGCACGAACACTATCGACGCAGTCCGACGC 59872 30 100.0 35 .............................. TCCAGGGACGGCCCGTCCTCGATCGTCGGGTTGCG 59807 30 100.0 37 .............................. GGCCAAGCCCAGCCCATGAAATGTTGAAGACTCCATG 59740 30 100.0 35 .............................. GCGATCTCACCGAGCTGCGTGTCACCGGGACGTGG 59675 30 100.0 37 .............................. TACAAGCACACGCACGGCCTCGTGTGTGTGGTCGTCA 59608 30 100.0 39 .............................. CAGCTGGTCGCTGGTCTCCGTCGCGACCGAGCGCTTCGA 59539 30 100.0 36 .............................. TACGAGCTGATCACCTGGAAGGCAAAGCTGGGTCTC 59473 30 100.0 36 .............................. GCAGCTGCACTGGTAGCAGGCTACCTGATCATCTAA 59407 30 100.0 36 .............................. GAGTTGTGTGAACTCGCTTTGCGTCTCGGTCGTTTC 59341 30 100.0 35 .............................. GCGCCGCCGGCCCCGAGGGTGTCGGTGACGATCGT 59276 30 100.0 36 .............................. TGCGAGTGCTGCGGGGAACCGACTCGGGTAGGCCAG 59210 30 100.0 35 .............................. TTTGGACGCACCATGCTTGTGTGCCTCTTGATGAA 59145 30 100.0 35 .............................. AAGGTCAATATTGGCGTCAGAGGTAAGCACGTCGC 59080 30 100.0 36 .............................. AATCGTTAGCTCAAGACCCTCAGTGGGAAGGTCGTA 59014 30 100.0 35 .............................. CACTCTGACGGTGCGGTATCGCGTAGACAGATACT 58949 30 100.0 34 .............................. TCGCGGTTGATGACCGCTGATTGGAGAGATGCTC 58885 30 100.0 36 .............................. CGGATCGTCGTGTCGCTCATGTCCATCCGCTCCTCC 58819 30 100.0 36 .............................. GCAGTGGTGGTCGTCACGGGCGTCCCGGACGTATCG 58753 30 100.0 37 .............................. CTGACTTTCCGGGGTGGCCCAAAGTCCGCTCGAAGTG 58686 30 100.0 37 .............................. CTCATGGGAGGGCGGGGGCAGCTTATCCGCGAGATCT 58619 30 100.0 35 .............................. CGATACGCTCGGTCAATAGAGCGCGTTGAAGCGTT 58554 30 100.0 37 .............................. GACCCCGAGATGCACGGCCACGCGGCCGTCGAGATCC 58487 30 100.0 36 .............................. GCGATTCGCGAGCTGCCAGCATCTTCGACCGTGTCG 58421 30 100.0 35 .............................. CAGCCCGTAGCGGTCGGCGGCCTGCCGCTCGACGA 58356 30 100.0 36 .............................. ACACGCTTCAAGCTGTTCGTCCGACAACTCGCCTGA 58290 30 100.0 35 .............................. GGTCGGATTGCACTCCCGATCATTGCACAAGGGCT 58225 30 100.0 35 .............................. ACGCCGAGTGGGATCGCTACGAGCTCAACAGCATC 58160 30 100.0 35 .............................. ACAGCCCGGACGCCGTTGATGATCGAGGCGTACTT 58095 30 100.0 38 .............................. CCATCGCCGTCCTCGGTCCGGTTGCCGACGTAGAAGCC 58027 30 96.7 36 ..............G............... TCGAACTGGAGGGCGCGGGCGGTCGTGGTCTTCCCG 57961 30 100.0 35 .............................. AGCCATGCGGTTAGTCAGGCGCTTCTGAATGTCCG 57896 30 100.0 36 .............................. CCTCTCCTCTCGGAGGGTGATCGGCTGGATTTCCGT 57830 30 100.0 36 .............................. ATCACACGGACTCGGTGTTTCGCTAGCTCACGCAAC 57764 30 100.0 37 .............................. TCTTCTCTCCAGATCACCCACGCAGCGGCCCCTCCGG 57697 30 100.0 34 .............................. AGACAGCACCCGGCCCCGTCGTCTCGGTCCCCGA 57633 30 100.0 35 .............................. AGTATCAGCGAACGAGTTCGCGCCGATCTCGTCGA 57568 30 100.0 37 .............................. CCGTATCCGGATCGTTCGTCACTTCATATTCCGGATC 57501 30 93.3 37 ....T............A............ GATGTCGATTTTTCCGTATGACATTGTTTTAGATCTG 57434 30 100.0 36 .............................. GGAAGATGCACAGCTAGAGAGGGAACACGTCTCGGA 57368 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 45 30 99.8 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCCTATCGAGAGATGGAGCGTGACCATCGGACAGTCGTGCACAAAGAGCGGTATGTATCGCTCGACGGCGTCCATATTAACCAGGCTGAGTGCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGGTTACTCACTCTAGCTGGGGAACCCACCGAGTCAATGATTGACTGCCTCGCTATCGGGGCTTTCCGCAGTTCTACATAAGAGCGAGACGGTCGAAGAGACCCCTCTGTCGCCGACTTCTCGCCACGTCGGTGGTGTCTCGCCTGCGTACTGACCGAGGAAGTTCGCGTTTCCATCGACCCCCGGGGGGTTCGAGGGGTATCGAGGGTCGACGGAAACGATGAAGTGCAAACGGCAAGTAGCAGTGTATACGTGGTCAAATCGACCATG # Right flank : AAGAAGCCTCGACGAGACGAATCGTCGCCGGACTGGTTTCAGACGGCAAACTGAGATCGAAGCTAGACGGTATCGTCCGGCGACTTCCACAGGGCTTCCAGATCGTCTCGCAGATACCGGATCGATTCGTACCGATCCCGTTTTGCCGTCGCCAGCGCCGTGCGTACGATCTCGTCGAGTTCGGGCGGCACGTCGTCACGATCGGCACTCGGGGCTGGCGGTGGCCCGTCGTCGCGGACGATTCGCTTGCGGACGGCGAGGCGGCCGCCGCTCACGGGTGGCTCGCCGCGTAGCATCGCGTACAGCACAGCGCCGACCTGGTAGATGTCCGTGACGGCGTCCGGTTCGCCGAAGGTCTCGGCGTCGAACTGTTCGGGCGCGGCGAAGTGTCGGGAGAAGCCTTCCATCGAGTCGGCTCGGTCCAGCAGCTTTCTCGCGAGGCCCCAGTCGGCGAGCTTCGGCAGGTCCCAGCGTGACGGTGTCGTTTCGGTGAAGAGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //