Array 1 244254-245136 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGD01000004.1 Escherichia coli strain TzEc076 NODE_4_length_404707_cov_50.0659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244254 29 100.0 32 ............................. ATTCTTAACTCGTTCATGCTTTATCCTCTCAA 244315 29 100.0 32 ............................. TAGTTTGTGATCGTCTGCGTATCGGCCTTTGT 244376 29 100.0 32 ............................. TCAACAGTGTGGGTTGGCGGTGACGGTGAAAA 244437 29 100.0 32 ............................. GCCCGCGCATTTTCCCCGCCAGTCAGCCGCGG 244498 29 100.0 32 ............................. ATCTGGACGCATGGGGGAAAGCTGCGGAACGC 244559 29 100.0 32 ............................. ACGCTGATTATTCCGTACCAGTATTGTGAGGC 244620 29 100.0 32 ............................. CTCGTCGCCAATCGCCAGTCAGACATCAAACA 244681 29 96.6 32 ...C......................... TGTCCCCAATTTGGTGACAGATGAAAGCAATG 244742 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 244803 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 244864 29 100.0 32 ............................. TAATGGCGGCGCATAACCGCCGCGTACAGCGT 244925 29 100.0 32 ............................. TCATTCAAAGAGCAGTACGAAGAACTTTTTAA 244986 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 245047 29 96.6 32 ............G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 245108 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 270776-271475 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSGD01000004.1 Escherichia coli strain TzEc076 NODE_4_length_404707_cov_50.0659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270776 29 100.0 32 ............................. GACGCTTACGCCAACATAATTAATCAGGCGAA 270837 29 100.0 32 ............................. GCGGTTGGACGAGAGAAATCTGACGCGAAAAA 270898 29 100.0 32 ............................. AACATTTTCCGACACTAACCGCCTGCTCAATA 270959 29 100.0 32 ............................. GCCTACCAGGACTACTCCCGCAGTGCCGCCAG 271020 29 100.0 32 ............................. CCGCACACGTCGAGCTGGTGGGGATTAATGCT 271081 29 100.0 32 ............................. TTCGCGACGTTAGAACGGTTGCAGAAATCGCG 271142 29 100.0 32 ............................. CAGTTAGTCAATAGTGAAACTGAAATCAATCA 271203 29 100.0 32 ............................. CCCGATTTCGTCAATGAGAAAATCGTGGGGCC 271264 29 100.0 32 ............................. GGAGGAAGTAAAGCAGACGGCACTGTCAAAAT 271325 29 100.0 32 ............................. GTGTTGACGTCGAGATAACTGTCGTCATCGAT 271386 29 100.0 32 ............................. AACACCTGTCCGTGGAAATATCGTGGTCCTGA 271447 28 82.8 0 .A.................A..-.C...C | T [271466] ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGATGAGCATGGTTGTGGTTGTTACAGAAAATGTCCCGCCTCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAGATCACTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAAACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATAAGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCTGCGTCGTTACAGCACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATTCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCGGGGGTATTTACGCCACTATTAAAATAAAGTTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //