Array 1 211371-211765 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIZ010000045.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
211371 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
211432 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC
211493 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
211554 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC
211615 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG
211676 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
211737 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================ ==================
7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 61252-60064 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIZ010000014.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
61251 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG
61190 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG
61129 29 100.0 32 ............................. TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT
61068 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG
61007 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT
60946 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTTACAACTAA
60885 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT
60824 29 100.0 32 ............................. GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT
60763 29 100.0 32 ............................. TCGGGCGGCTCTGGTGTTCCTGACATGGCGGC
60702 29 100.0 32 ............................. AATTTGCATCACATAGGGGCGAGGCTCAGTGA
60641 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTCCACGTA
60580 29 100.0 32 ............................. TTATACTGATTTTGATTTGTATTTCGGTCGCT
60519 29 100.0 32 ............................. ACACGCCCTGCCGTATTTACTGACGCGCAGGA
60458 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA
60397 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA
60336 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG
60275 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC
60214 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT
60153 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
60092 29 96.6 0 ............T................ |
========== ====== ====== ====== ============================= ================================ ==================
20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AAATATTGTAGTTTACAGAGAGCGTCGCAAGTCATTGTTTGTACACAAGTAATTGAGCAAAGCGTGGATATTGACCTGGACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCAGGACGATTACAGCGGCATATCCGCGATATTAATGGTCAGTTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//